Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A9:A8
Extra
PDB:
ATOM 1 O3' G A 8 10.622 -12.503 21.328 1.00 35.96 O
ATOM 2 P A A 9 10.614 -11.561 20.035 1.00 39.57 P
ATOM 3 OP1 A A 9 10.631 -10.158 20.515 1.00 44.02 O
ATOM 4 OP2 A A 9 9.491 -12.012 19.178 1.00 39.64 O
ATOM 5 O5' A A 9 11.997 -11.915 19.340 1.00 35.34 O
ATOM 6 C5' A A 9 13.232 -11.650 19.987 1.00 38.40 C
ATOM 7 C4' A A 9 14.388 -11.903 19.059 1.00 41.20 C
ATOM 8 O4' A A 9 14.475 -13.323 18.768 1.00 42.08 O
ATOM 9 C3' A A 9 14.284 -11.245 17.691 1.00 42.11 C
ATOM 10 O3' A A 9 14.708 -9.894 17.698 1.00 41.95 O
ATOM 11 C2' A A 9 15.135 -12.153 16.816 1.00 43.32 C
ATOM 12 O2' A A 9 16.516 -11.890 17.014 1.00 45.09 O
ATOM 13 C1' A A 9 14.820 -13.520 17.415 1.00 42.80 C
ATOM 14 N9 A A 9 13.688 -14.179 16.739 1.00 41.39 N
ATOM 15 C8 A A 9 12.413 -14.363 17.216 1.00 41.13 C
ATOM 16 N7 A A 9 11.628 -15.006 16.385 1.00 40.12 N
ATOM 17 C5 A A 9 12.445 -15.270 15.294 1.00 40.42 C
ATOM 18 C6 A A 9 12.212 -15.927 14.074 1.00 39.62 C
ATOM 19 N6 A A 9 11.039 -16.464 13.731 1.00 39.19 N
ATOM 20 N1 A A 9 13.240 -16.016 13.205 1.00 41.75 N
ATOM 21 C2 A A 9 14.419 -15.481 13.548 1.00 41.89 C
ATOM 22 N3 A A 9 14.763 -14.838 14.660 1.00 40.75 N
ATOM 23 C4 A A 9 13.718 -14.770 15.501 1.00 41.01 C
ATOM 24 P U A 10 14.052 -8.833 16.686 1.00 47.94 P
ATOM 25 OP1 U A 10 14.615 -7.504 17.025 1.00 50.89 O
ATOM 26 OP2 U A 10 12.581 -9.020 16.745 1.00 44.30 O
ATOM 27 O5' U A 10 14.602 -9.312 15.272 1.00 43.77 O
TER
ATOM 1 O3' A B 7 6.736 -17.328 24.177 1.00 34.19 O
ATOM 2 P G B 8 6.467 -16.231 23.037 1.00 35.94 P
ATOM 3 OP1 G B 8 5.157 -15.601 23.336 1.00 38.14 O
ATOM 4 OP2 G B 8 6.655 -16.901 21.729 1.00 33.93 O
ATOM 5 O5' G B 8 7.638 -15.186 23.282 1.00 34.28 O
ATOM 6 C5' G B 8 8.253 -14.519 22.198 1.00 34.24 C
ATOM 7 C4' G B 8 9.753 -14.563 22.309 1.00 34.35 C
ATOM 8 O4' G B 8 10.204 -15.942 22.279 1.00 34.25 O
ATOM 9 C3' G B 8 10.513 -13.901 21.175 1.00 36.49 C
ATOM 10 O3' G B 8 10.622 -12.503 21.328 1.00 35.96 O
ATOM 11 C2' G B 8 11.846 -14.626 21.200 1.00 38.28 C
ATOM 12 O2' G B 8 12.647 -14.154 22.274 1.00 41.98 O
ATOM 13 C1' G B 8 11.391 -16.046 21.523 1.00 39.79 C
ATOM 14 N9 G B 8 11.086 -16.812 20.300 1.00 38.89 N
ATOM 15 C8 G B 8 9.854 -17.308 19.956 1.00 37.54 C
ATOM 16 N7 G B 8 9.850 -17.942 18.816 1.00 36.97 N
ATOM 17 C5 G B 8 11.161 -17.859 18.379 1.00 38.28 C
ATOM 18 C6 G B 8 11.760 -18.367 17.198 1.00 38.05 C
ATOM 19 O6 G B 8 11.233 -19.006 16.282 1.00 35.49 O
ATOM 20 N1 G B 8 13.114 -18.059 17.144 1.00 41.19 N
ATOM 21 C2 G B 8 13.804 -17.353 18.099 1.00 43.30 C
ATOM 22 N2 G B 8 15.111 -17.161 17.863 1.00 45.82 N
ATOM 23 N3 G B 8 13.258 -16.875 19.206 1.00 40.15 N
ATOM 24 C4 G B 8 11.942 -17.165 19.282 1.00 38.62 C
ATOM 25 P A B 9 10.614 -11.561 20.035 1.00 39.57 P
ATOM 26 OP1 A B 9 10.631 -10.158 20.515 1.00 44.02 O
ATOM 27 OP2 A B 9 9.491 -12.012 19.178 1.00 39.64 O
ATOM 28 O5' A B 9 11.997 -11.915 19.340 1.00 35.34 O
TER
ATOM 2 P A A 9 10.614 -11.561 20.035 1.00 39.57 P
ATOM 3 OP1 A A 9 10.631 -10.158 20.515 1.00 44.02 O
ATOM 4 OP2 A A 9 9.491 -12.012 19.178 1.00 39.64 O
ATOM 5 O5' A A 9 11.997 -11.915 19.340 1.00 35.34 O
ATOM 6 C5' A A 9 13.232 -11.650 19.987 1.00 38.40 C
ATOM 7 C4' A A 9 14.388 -11.903 19.059 1.00 41.20 C
ATOM 8 O4' A A 9 14.475 -13.323 18.768 1.00 42.08 O
ATOM 9 C3' A A 9 14.284 -11.245 17.691 1.00 42.11 C
ATOM 10 O3' A A 9 14.708 -9.894 17.698 1.00 41.95 O
ATOM 11 C2' A A 9 15.135 -12.153 16.816 1.00 43.32 C
ATOM 12 O2' A A 9 16.516 -11.890 17.014 1.00 45.09 O
ATOM 13 C1' A A 9 14.820 -13.520 17.415 1.00 42.80 C
ATOM 14 N9 A A 9 13.688 -14.179 16.739 1.00 41.39 N
ATOM 15 C8 A A 9 12.413 -14.363 17.216 1.00 41.13 C
ATOM 16 N7 A A 9 11.628 -15.006 16.385 1.00 40.12 N
ATOM 17 C5 A A 9 12.445 -15.270 15.294 1.00 40.42 C
ATOM 18 C6 A A 9 12.212 -15.927 14.074 1.00 39.62 C
ATOM 19 N6 A A 9 11.039 -16.464 13.731 1.00 39.19 N
ATOM 20 N1 A A 9 13.240 -16.016 13.205 1.00 41.75 N
ATOM 21 C2 A A 9 14.419 -15.481 13.548 1.00 41.89 C
ATOM 22 N3 A A 9 14.763 -14.838 14.660 1.00 40.75 N
ATOM 23 C4 A A 9 13.718 -14.770 15.501 1.00 41.01 C
ATOM 24 P U A 10 14.052 -8.833 16.686 1.00 47.94 P
ATOM 25 OP1 U A 10 14.615 -7.504 17.025 1.00 50.89 O
ATOM 26 OP2 U A 10 12.581 -9.020 16.745 1.00 44.30 O
ATOM 27 O5' U A 10 14.602 -9.312 15.272 1.00 43.77 O
TER
ATOM 1 O3' A B 7 6.736 -17.328 24.177 1.00 34.19 O
ATOM 2 P G B 8 6.467 -16.231 23.037 1.00 35.94 P
ATOM 3 OP1 G B 8 5.157 -15.601 23.336 1.00 38.14 O
ATOM 4 OP2 G B 8 6.655 -16.901 21.729 1.00 33.93 O
ATOM 5 O5' G B 8 7.638 -15.186 23.282 1.00 34.28 O
ATOM 6 C5' G B 8 8.253 -14.519 22.198 1.00 34.24 C
ATOM 7 C4' G B 8 9.753 -14.563 22.309 1.00 34.35 C
ATOM 8 O4' G B 8 10.204 -15.942 22.279 1.00 34.25 O
ATOM 9 C3' G B 8 10.513 -13.901 21.175 1.00 36.49 C
ATOM 10 O3' G B 8 10.622 -12.503 21.328 1.00 35.96 O
ATOM 11 C2' G B 8 11.846 -14.626 21.200 1.00 38.28 C
ATOM 12 O2' G B 8 12.647 -14.154 22.274 1.00 41.98 O
ATOM 13 C1' G B 8 11.391 -16.046 21.523 1.00 39.79 C
ATOM 14 N9 G B 8 11.086 -16.812 20.300 1.00 38.89 N
ATOM 15 C8 G B 8 9.854 -17.308 19.956 1.00 37.54 C
ATOM 16 N7 G B 8 9.850 -17.942 18.816 1.00 36.97 N
ATOM 17 C5 G B 8 11.161 -17.859 18.379 1.00 38.28 C
ATOM 18 C6 G B 8 11.760 -18.367 17.198 1.00 38.05 C
ATOM 19 O6 G B 8 11.233 -19.006 16.282 1.00 35.49 O
ATOM 20 N1 G B 8 13.114 -18.059 17.144 1.00 41.19 N
ATOM 21 C2 G B 8 13.804 -17.353 18.099 1.00 43.30 C
ATOM 22 N2 G B 8 15.111 -17.161 17.863 1.00 45.82 N
ATOM 23 N3 G B 8 13.258 -16.875 19.206 1.00 40.15 N
ATOM 24 C4 G B 8 11.942 -17.165 19.282 1.00 38.62 C
ATOM 25 P A B 9 10.614 -11.561 20.035 1.00 39.57 P
ATOM 26 OP1 A B 9 10.631 -10.158 20.515 1.00 44.02 O
ATOM 27 OP2 A B 9 9.491 -12.012 19.178 1.00 39.64 O
ATOM 28 O5' A B 9 11.997 -11.915 19.340 1.00 35.34 O
TER
Atoms:
OP1: (10.631,-10.158,20.515)
OP2: (9.491,-12.012,19.178)
C3': (14.284,-11.245,17.691)
C1': (14.820,-13.520,17.415)
C5': (13.232,-11.650,19.987)
O4': (14.475,-13.323,18.768)
C8: (12.413,-14.363,17.216)
O2': (16.516,-11.890,17.014)
C6: (12.212,-15.927,14.074)
C5: (12.445,-15.270,15.294)
C4: (13.718,-14.770,15.501)
P: (10.614,-11.561,20.035)
C4': (14.388,-11.903,19.059)
C2': (15.135,-12.153,16.816)
C2: (14.419,-15.481,13.548)
N1: (13.240,-16.016,13.205)
N3: (14.763,-14.838,14.660)
N6: (11.039,-16.464,13.731)
N7: (11.628,-15.006,16.385)
N9: (13.688,-14.179,16.739)
O5': (11.997,-11.915,19.340)
O3': (14.708,-9.894,17.698)
OP2: (9.491,-12.012,19.178)
C3': (14.284,-11.245,17.691)
C1': (14.820,-13.520,17.415)
C5': (13.232,-11.650,19.987)
O4': (14.475,-13.323,18.768)
C8: (12.413,-14.363,17.216)
O2': (16.516,-11.890,17.014)
C6: (12.212,-15.927,14.074)
C5: (12.445,-15.270,15.294)
C4: (13.718,-14.770,15.501)
P: (10.614,-11.561,20.035)
C4': (14.388,-11.903,19.059)
C2': (15.135,-12.153,16.816)
C2: (14.419,-15.481,13.548)
N1: (13.240,-16.016,13.205)
N3: (14.763,-14.838,14.660)
N6: (11.039,-16.464,13.731)
N7: (11.628,-15.006,16.385)
N9: (13.688,-14.179,16.739)
O5': (11.997,-11.915,19.340)
O3': (14.708,-9.894,17.698)
OP1: (5.157,-15.601,23.336)
OP2: (6.655,-16.901,21.729)
C3': (10.513,-13.901,21.175)
C1': (11.391,-16.046,21.523)
C5': (8.253,-14.519,22.198)
O6: (11.233,-19.006,16.282)
O4': (10.204,-15.942,22.279)
C8: (9.854,-17.308,19.956)
C2: (13.804,-17.353,18.099)
C6: (11.760,-18.367,17.198)
C5: (11.161,-17.859,18.379)
C4: (11.942,-17.165,19.282)
P: (6.467,-16.231,23.037)
C4': (9.753,-14.563,22.309)
C2': (11.846,-14.626,21.200)
O2': (12.647,-14.154,22.274)
N1: (13.114,-18.059,17.144)
N2: (15.111,-17.161,17.863)
N3: (13.258,-16.875,19.206)
N7: (9.850,-17.942,18.816)
N9: (11.086,-16.812,20.300)
O5': (7.638,-15.186,23.282)
O3': (10.622,-12.503,21.328)
OP2: (6.655,-16.901,21.729)
C3': (10.513,-13.901,21.175)
C1': (11.391,-16.046,21.523)
C5': (8.253,-14.519,22.198)
O6: (11.233,-19.006,16.282)
O4': (10.204,-15.942,22.279)
C8: (9.854,-17.308,19.956)
C2: (13.804,-17.353,18.099)
C6: (11.760,-18.367,17.198)
C5: (11.161,-17.859,18.379)
C4: (11.942,-17.165,19.282)
P: (6.467,-16.231,23.037)
C4': (9.753,-14.563,22.309)
C2': (11.846,-14.626,21.200)
O2': (12.647,-14.154,22.274)
N1: (13.114,-18.059,17.144)
N2: (15.111,-17.161,17.863)
N3: (13.258,-16.875,19.206)
N7: (9.850,-17.942,18.816)
N9: (11.086,-16.812,20.300)
O5': (7.638,-15.186,23.282)
O3': (10.622,-12.503,21.328)
Image (generated by PyMOL):