Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KNZ:W2:W1
Extra
PDB:
ATOM 1 O3' G A 1 -3.297 5.368 11.830 1.00 23.54 O
ATOM 2 P A A 2 -4.251 6.538 12.372 1.00 19.41 P
ATOM 3 OP1 A A 2 -3.781 7.784 11.733 1.00 18.66 O
ATOM 4 OP2 A A 2 -4.311 6.446 13.847 1.00 21.39 O
ATOM 5 O5' A A 2 -5.691 6.205 11.771 1.00 20.94 O
ATOM 6 C5' A A 2 -5.951 6.346 10.374 1.00 16.06 C
ATOM 7 C4' A A 2 -7.413 6.094 10.080 1.00 20.20 C
ATOM 8 O4' A A 2 -7.717 4.697 10.341 1.00 16.31 O
ATOM 9 C3' A A 2 -8.382 6.895 10.944 1.00 21.98 C
ATOM 10 O3' A A 2 -9.617 7.117 10.274 1.00 21.16 O
ATOM 11 C2' A A 2 -8.598 5.972 12.132 1.00 13.42 C
ATOM 12 O2' A A 2 -9.836 6.160 12.786 1.00 19.52 O
ATOM 13 C1' A A 2 -8.581 4.601 11.457 1.00 21.97 C
ATOM 14 N9 A A 2 -8.065 3.583 12.367 1.00 24.41 N
ATOM 15 C8 A A 2 -6.919 3.612 13.131 1.00 28.78 C
ATOM 16 N7 A A 2 -6.768 2.557 13.893 1.00 25.89 N
ATOM 17 C5 A A 2 -7.879 1.780 13.603 1.00 27.48 C
ATOM 18 C6 A A 2 -8.306 0.537 14.077 1.00 32.00 C
ATOM 19 N6 A A 2 -7.643 -0.176 14.989 1.00 28.61 N
ATOM 20 N1 A A 2 -9.462 0.042 13.578 1.00 37.62 N
ATOM 21 C2 A A 2 -10.125 0.762 12.655 1.00 29.44 C
ATOM 22 N3 A A 2 -9.822 1.939 12.134 1.00 15.42 N
ATOM 23 C4 A A 2 -8.674 2.396 12.653 1.00 18.01 C
ATOM 24 P C A 3 -10.552 8.350 10.718 1.00 23.37 P
ATOM 25 OP1 C A 3 -10.298 8.631 12.138 1.00 19.27 O
ATOM 26 OP2 C A 3 -11.937 8.042 10.285 1.00 24.12 O
ATOM 27 O5' C A 3 -10.006 9.559 9.824 1.00 20.01 O
TER
ATOM 1 P G B 1 -2.283 3.253 16.289 1.00 31.28 P
ATOM 2 OP1 G B 1 -1.379 4.424 16.419 1.00 34.38 O
ATOM 3 OP2 G B 1 -3.592 3.252 16.988 1.00 38.49 O
ATOM 4 O5' G B 1 -2.554 2.998 14.739 1.00 28.79 O
ATOM 5 C5' G B 1 -1.601 3.390 13.757 1.00 20.80 C
ATOM 6 C4' G B 1 -2.206 3.311 12.377 1.00 21.65 C
ATOM 7 O4' G B 1 -2.476 1.928 12.049 1.00 19.51 O
ATOM 8 C3' G B 1 -3.540 4.021 12.213 1.00 26.09 C
ATOM 9 O3' G B 1 -3.297 5.368 11.830 1.00 23.54 O
ATOM 10 C2' G B 1 -4.193 3.264 11.056 1.00 23.22 C
ATOM 11 O2' G B 1 -3.787 3.794 9.809 1.00 16.38 O
ATOM 12 C1' G B 1 -3.614 1.856 11.213 1.00 17.94 C
ATOM 13 N9 G B 1 -4.499 0.822 11.743 1.00 15.91 N
ATOM 14 C8 G B 1 -4.215 -0.009 12.795 1.00 15.81 C
ATOM 15 N7 G B 1 -5.128 -0.917 12.989 1.00 12.97 N
ATOM 16 C5 G B 1 -6.096 -0.660 12.032 1.00 12.60 C
ATOM 17 C6 G B 1 -7.313 -1.328 11.759 1.00 13.84 C
ATOM 18 O6 G B 1 -7.796 -2.319 12.321 1.00 22.75 O
ATOM 19 N1 G B 1 -7.991 -0.736 10.704 1.00 9.54 N
ATOM 20 C2 G B 1 -7.554 0.359 10.005 1.00 18.82 C
ATOM 21 N2 G B 1 -8.370 0.788 9.031 1.00 12.21 N
ATOM 22 N3 G B 1 -6.412 0.987 10.244 1.00 13.79 N
ATOM 23 C4 G B 1 -5.734 0.430 11.265 1.00 15.27 C
ATOM 24 P A B 2 -4.251 6.538 12.372 1.00 19.41 P
ATOM 25 OP1 A B 2 -3.781 7.784 11.733 1.00 18.66 O
ATOM 26 OP2 A B 2 -4.311 6.446 13.847 1.00 21.39 O
ATOM 27 O5' A B 2 -5.691 6.205 11.771 1.00 20.94 O
TER
ATOM 2 P A A 2 -4.251 6.538 12.372 1.00 19.41 P
ATOM 3 OP1 A A 2 -3.781 7.784 11.733 1.00 18.66 O
ATOM 4 OP2 A A 2 -4.311 6.446 13.847 1.00 21.39 O
ATOM 5 O5' A A 2 -5.691 6.205 11.771 1.00 20.94 O
ATOM 6 C5' A A 2 -5.951 6.346 10.374 1.00 16.06 C
ATOM 7 C4' A A 2 -7.413 6.094 10.080 1.00 20.20 C
ATOM 8 O4' A A 2 -7.717 4.697 10.341 1.00 16.31 O
ATOM 9 C3' A A 2 -8.382 6.895 10.944 1.00 21.98 C
ATOM 10 O3' A A 2 -9.617 7.117 10.274 1.00 21.16 O
ATOM 11 C2' A A 2 -8.598 5.972 12.132 1.00 13.42 C
ATOM 12 O2' A A 2 -9.836 6.160 12.786 1.00 19.52 O
ATOM 13 C1' A A 2 -8.581 4.601 11.457 1.00 21.97 C
ATOM 14 N9 A A 2 -8.065 3.583 12.367 1.00 24.41 N
ATOM 15 C8 A A 2 -6.919 3.612 13.131 1.00 28.78 C
ATOM 16 N7 A A 2 -6.768 2.557 13.893 1.00 25.89 N
ATOM 17 C5 A A 2 -7.879 1.780 13.603 1.00 27.48 C
ATOM 18 C6 A A 2 -8.306 0.537 14.077 1.00 32.00 C
ATOM 19 N6 A A 2 -7.643 -0.176 14.989 1.00 28.61 N
ATOM 20 N1 A A 2 -9.462 0.042 13.578 1.00 37.62 N
ATOM 21 C2 A A 2 -10.125 0.762 12.655 1.00 29.44 C
ATOM 22 N3 A A 2 -9.822 1.939 12.134 1.00 15.42 N
ATOM 23 C4 A A 2 -8.674 2.396 12.653 1.00 18.01 C
ATOM 24 P C A 3 -10.552 8.350 10.718 1.00 23.37 P
ATOM 25 OP1 C A 3 -10.298 8.631 12.138 1.00 19.27 O
ATOM 26 OP2 C A 3 -11.937 8.042 10.285 1.00 24.12 O
ATOM 27 O5' C A 3 -10.006 9.559 9.824 1.00 20.01 O
TER
ATOM 1 P G B 1 -2.283 3.253 16.289 1.00 31.28 P
ATOM 2 OP1 G B 1 -1.379 4.424 16.419 1.00 34.38 O
ATOM 3 OP2 G B 1 -3.592 3.252 16.988 1.00 38.49 O
ATOM 4 O5' G B 1 -2.554 2.998 14.739 1.00 28.79 O
ATOM 5 C5' G B 1 -1.601 3.390 13.757 1.00 20.80 C
ATOM 6 C4' G B 1 -2.206 3.311 12.377 1.00 21.65 C
ATOM 7 O4' G B 1 -2.476 1.928 12.049 1.00 19.51 O
ATOM 8 C3' G B 1 -3.540 4.021 12.213 1.00 26.09 C
ATOM 9 O3' G B 1 -3.297 5.368 11.830 1.00 23.54 O
ATOM 10 C2' G B 1 -4.193 3.264 11.056 1.00 23.22 C
ATOM 11 O2' G B 1 -3.787 3.794 9.809 1.00 16.38 O
ATOM 12 C1' G B 1 -3.614 1.856 11.213 1.00 17.94 C
ATOM 13 N9 G B 1 -4.499 0.822 11.743 1.00 15.91 N
ATOM 14 C8 G B 1 -4.215 -0.009 12.795 1.00 15.81 C
ATOM 15 N7 G B 1 -5.128 -0.917 12.989 1.00 12.97 N
ATOM 16 C5 G B 1 -6.096 -0.660 12.032 1.00 12.60 C
ATOM 17 C6 G B 1 -7.313 -1.328 11.759 1.00 13.84 C
ATOM 18 O6 G B 1 -7.796 -2.319 12.321 1.00 22.75 O
ATOM 19 N1 G B 1 -7.991 -0.736 10.704 1.00 9.54 N
ATOM 20 C2 G B 1 -7.554 0.359 10.005 1.00 18.82 C
ATOM 21 N2 G B 1 -8.370 0.788 9.031 1.00 12.21 N
ATOM 22 N3 G B 1 -6.412 0.987 10.244 1.00 13.79 N
ATOM 23 C4 G B 1 -5.734 0.430 11.265 1.00 15.27 C
ATOM 24 P A B 2 -4.251 6.538 12.372 1.00 19.41 P
ATOM 25 OP1 A B 2 -3.781 7.784 11.733 1.00 18.66 O
ATOM 26 OP2 A B 2 -4.311 6.446 13.847 1.00 21.39 O
ATOM 27 O5' A B 2 -5.691 6.205 11.771 1.00 20.94 O
TER
Atoms:
OP1: (-3.781,7.784,11.733)
OP2: (-4.311,6.446,13.847)
C3': (-8.382,6.895,10.944)
C1': (-8.581,4.601,11.457)
C5': (-5.951,6.346,10.374)
O4': (-7.717,4.697,10.341)
C8: (-6.919,3.612,13.131)
O2': (-9.836,6.160,12.786)
C6: (-8.306,0.537,14.077)
C5: (-7.879,1.780,13.603)
C4: (-8.674,2.396,12.653)
P: (-4.251,6.538,12.372)
C4': (-7.413,6.094,10.080)
C2': (-8.598,5.972,12.132)
C2: (-10.125,0.762,12.655)
N1: (-9.462,0.042,13.578)
N3: (-9.822,1.939,12.134)
N6: (-7.643,-0.176,14.989)
N7: (-6.768,2.557,13.893)
N9: (-8.065,3.583,12.367)
O5': (-5.691,6.205,11.771)
O3': (-9.617,7.117,10.274)
OP2: (-4.311,6.446,13.847)
C3': (-8.382,6.895,10.944)
C1': (-8.581,4.601,11.457)
C5': (-5.951,6.346,10.374)
O4': (-7.717,4.697,10.341)
C8: (-6.919,3.612,13.131)
O2': (-9.836,6.160,12.786)
C6: (-8.306,0.537,14.077)
C5: (-7.879,1.780,13.603)
C4: (-8.674,2.396,12.653)
P: (-4.251,6.538,12.372)
C4': (-7.413,6.094,10.080)
C2': (-8.598,5.972,12.132)
C2: (-10.125,0.762,12.655)
N1: (-9.462,0.042,13.578)
N3: (-9.822,1.939,12.134)
N6: (-7.643,-0.176,14.989)
N7: (-6.768,2.557,13.893)
N9: (-8.065,3.583,12.367)
O5': (-5.691,6.205,11.771)
O3': (-9.617,7.117,10.274)
OP1: (-1.379,4.424,16.419)
OP2: (-3.592,3.252,16.988)
C3': (-3.540,4.021,12.213)
C1': (-3.614,1.856,11.213)
C5': (-1.601,3.390,13.757)
O6: (-7.796,-2.319,12.321)
O4': (-2.476,1.928,12.049)
C8: (-4.215,-0.009,12.795)
C2: (-7.554,0.359,10.005)
C6: (-7.313,-1.328,11.759)
C5: (-6.096,-0.660,12.032)
C4: (-5.734,0.430,11.265)
P: (-2.283,3.253,16.289)
C4': (-2.206,3.311,12.377)
C2': (-4.193,3.264,11.056)
O2': (-3.787,3.794,9.809)
N1: (-7.991,-0.736,10.704)
N2: (-8.370,0.788,9.031)
N3: (-6.412,0.987,10.244)
N7: (-5.128,-0.917,12.989)
N9: (-4.499,0.822,11.743)
O5': (-2.554,2.998,14.739)
O3': (-3.297,5.368,11.830)
OP2: (-3.592,3.252,16.988)
C3': (-3.540,4.021,12.213)
C1': (-3.614,1.856,11.213)
C5': (-1.601,3.390,13.757)
O6: (-7.796,-2.319,12.321)
O4': (-2.476,1.928,12.049)
C8: (-4.215,-0.009,12.795)
C2: (-7.554,0.359,10.005)
C6: (-7.313,-1.328,11.759)
C5: (-6.096,-0.660,12.032)
C4: (-5.734,0.430,11.265)
P: (-2.283,3.253,16.289)
C4': (-2.206,3.311,12.377)
C2': (-4.193,3.264,11.056)
O2': (-3.787,3.794,9.809)
N1: (-7.991,-0.736,10.704)
N2: (-8.370,0.788,9.031)
N3: (-6.412,0.987,10.244)
N7: (-5.128,-0.917,12.989)
N9: (-4.499,0.822,11.743)
O5': (-2.554,2.998,14.739)
O3': (-3.297,5.368,11.830)
Image (generated by PyMOL):