ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:02110:02109

Extra

PDB:
ATOM 1 O3' G A2109 98.238 111.250 42.428 1.00 40.82 O
ATOM 2 P A A2110 97.764 110.445 43.732 1.00 40.22 P
ATOM 3 OP1 A A2110 96.283 110.511 43.751 1.00 38.25 O
ATOM 4 OP2 A A2110 98.538 110.963 44.898 1.00 39.57 O
ATOM 5 O5' A A2110 98.222 108.940 43.452 1.00 39.91 O
ATOM 6 C5' A A2110 97.507 108.115 42.506 1.00 39.94 C
ATOM 7 C4' A A2110 98.099 106.720 42.438 1.00 40.46 C
ATOM 8 O4' A A2110 99.488 106.794 42.019 1.00 41.31 O
ATOM 9 C3' A A2110 98.151 105.893 43.714 1.00 40.51 C
ATOM 10 O3' A A2110 96.898 105.277 44.006 1.00 42.23 O
ATOM 11 C2' A A2110 99.213 104.854 43.365 1.00 40.75 C
ATOM 12 O2' A A2110 98.724 103.805 42.548 1.00 40.87 O
ATOM 13 C1' A A2110 100.210 105.701 42.568 1.00 39.30 C
ATOM 14 N9 A A2110 101.267 106.228 43.427 1.00 36.34 N
ATOM 15 C8 A A2110 101.346 107.469 44.005 1.00 37.08 C
ATOM 16 N7 A A2110 102.388 107.624 44.782 1.00 36.72 N
ATOM 17 C5 A A2110 103.048 106.408 44.696 1.00 35.26 C
ATOM 18 C6 A A2110 104.218 105.930 45.299 1.00 34.33 C
ATOM 19 N6 A A2110 104.949 106.642 46.151 1.00 33.88 N
ATOM 20 N1 A A2110 104.612 104.677 44.999 1.00 35.39 N
ATOM 21 C2 A A2110 103.863 103.957 44.157 1.00 36.25 C
ATOM 22 N3 A A2110 102.734 104.291 43.536 1.00 35.93 N
ATOM 23 C4 A A2110 102.378 105.546 43.852 1.00 35.43 C
ATOM 24 P U A2111 96.500 104.942 45.534 1.00 40.67 P
ATOM 25 OP1 U A2111 95.101 104.465 45.485 1.00 42.28 O
ATOM 26 OP2 U A2111 96.847 106.100 46.400 1.00 41.58 O
ATOM 27 O5' U A2111 97.433 103.713 45.930 1.00 38.54 O
TER

ATOM 1 O3' C B2108 102.153 115.788 43.889 1.00 44.81 O
ATOM 2 P G B2109 101.296 114.737 44.750 1.00 44.13 P
ATOM 3 OP1 G B2109 100.075 115.460 45.198 1.00 44.38 O
ATOM 4 OP2 G B2109 102.203 114.118 45.762 1.00 42.49 O
ATOM 5 O5' G B2109 100.881 113.622 43.690 1.00 41.93 O
ATOM 6 C5' G B2109 100.027 113.942 42.583 1.00 40.87 C
ATOM 7 C4' G B2109 99.971 112.786 41.613 1.00 42.47 C
ATOM 8 O4' G B2109 101.288 112.567 41.038 1.00 43.47 O
ATOM 9 C3' G B2109 99.624 111.425 42.191 1.00 41.51 C
ATOM 10 O3' G B2109 98.238 111.250 42.428 1.00 40.82 O
ATOM 11 C2' G B2109 100.154 110.487 41.116 1.00 41.81 C
ATOM 12 O2' G B2109 99.337 110.438 39.962 1.00 43.14 O
ATOM 13 C1' G B2109 101.464 111.181 40.758 1.00 40.68 C
ATOM 14 N9 G B2109 102.572 110.683 41.567 1.00 39.31 N
ATOM 15 C8 G B2109 103.234 111.352 42.571 1.00 38.66 C
ATOM 16 N7 G B2109 104.184 110.645 43.117 1.00 38.34 N
ATOM 17 C5 G B2109 104.153 109.438 42.429 1.00 38.01 C
ATOM 18 C6 G B2109 104.956 108.281 42.574 1.00 37.65 C
ATOM 19 O6 G B2109 105.897 108.088 43.352 1.00 40.23 O
ATOM 20 N1 G B2109 104.574 107.281 41.690 1.00 36.88 N
ATOM 21 C2 G B2109 103.554 107.378 40.781 1.00 36.37 C
ATOM 22 N2 G B2109 103.320 106.283 40.042 1.00 33.55 N
ATOM 23 N3 G B2109 102.813 108.463 40.616 1.00 35.55 N
ATOM 24 C4 G B2109 103.161 109.444 41.472 1.00 36.89 C
ATOM 25 P A B2110 97.764 110.445 43.732 1.00 40.22 P
ATOM 26 OP1 A B2110 96.283 110.511 43.751 1.00 38.25 O
ATOM 27 OP2 A B2110 98.538 110.963 44.898 1.00 39.57 O
ATOM 28 O5' A B2110 98.222 108.940 43.452 1.00 39.91 O
TER

Atoms:
OP1: (96.283,110.511,43.751)
OP2: (98.538,110.963,44.898)
C3': (98.151,105.893,43.714)
C1': (100.210,105.701,42.568)
C5': (97.507,108.115,42.506)
O4': (99.488,106.794,42.019)
C8: (101.346,107.469,44.005)
O2': (98.724,103.805,42.548)
C6: (104.218,105.930,45.299)
C5: (103.048,106.408,44.696)
C4: (102.378,105.546,43.852)
P: (97.764,110.445,43.732)
C4': (98.099,106.720,42.438)
C2': (99.213,104.854,43.365)
C2: (103.863,103.957,44.157)
N1: (104.612,104.677,44.999)
N3: (102.734,104.291,43.536)
N6: (104.949,106.642,46.151)
N7: (102.388,107.624,44.782)
N9: (101.267,106.228,43.427)
O5': (98.222,108.940,43.452)
O3': (96.898,105.277,44.006)
OP1: (100.075,115.460,45.198)
OP2: (102.203,114.118,45.762)
C3': (99.624,111.425,42.191)
C1': (101.464,111.181,40.758)
C5': (100.027,113.942,42.583)
O6: (105.897,108.088,43.352)
O4': (101.288,112.567,41.038)
C8: (103.234,111.352,42.571)
C2: (103.554,107.378,40.781)
C6: (104.956,108.281,42.574)
C5: (104.153,109.438,42.429)
C4: (103.161,109.444,41.472)
P: (101.296,114.737,44.750)
C4': (99.971,112.786,41.613)
C2': (100.154,110.487,41.116)
O2': (99.337,110.438,39.962)
N1: (104.574,107.281,41.690)
N2: (103.320,106.283,40.042)
N3: (102.813,108.463,40.616)
N7: (104.184,110.645,43.117)
N9: (102.572,110.683,41.567)
O5': (100.881,113.622,43.690)
O3': (98.238,111.250,42.428)
Image (generated by PyMOL):
PyMOL image
show in jmol