Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0561:0560
Extra
PDB:
ATOM 1 O3' G A 560 -12.743 94.742 127.728 1.00 88.76 O
ATOM 2 P A A 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 3 OP1 A A 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 4 OP2 A A 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 5 O5' A A 561 -12.394 92.279 128.155 1.00 89.02 O
ATOM 6 C5' A A 561 -13.703 91.699 128.028 1.00 87.84 C
ATOM 7 C4' A A 561 -13.597 90.296 127.494 1.00 88.23 C
ATOM 8 O4' A A 561 -13.034 90.346 126.156 1.00 89.63 O
ATOM 9 C3' A A 561 -12.645 89.379 128.245 1.00 89.19 C
ATOM 10 O3' A A 561 -13.205 88.828 129.431 1.00 90.19 O
ATOM 11 C2' A A 561 -12.309 88.335 127.188 1.00 89.43 C
ATOM 12 O2' A A 561 -13.312 87.354 126.995 1.00 88.28 O
ATOM 13 C1' A A 561 -12.193 89.217 125.943 1.00 89.47 C
ATOM 14 N9 A A 561 -10.815 89.687 125.761 1.00 89.08 N
ATOM 15 C8 A A 561 -10.259 90.873 126.187 1.00 88.50 C
ATOM 16 N7 A A 561 -8.981 90.983 125.920 1.00 87.50 N
ATOM 17 C5 A A 561 -8.673 89.799 125.263 1.00 87.17 C
ATOM 18 C6 A A 561 -7.474 89.302 124.724 1.00 86.62 C
ATOM 19 N6 A A 561 -6.315 89.962 124.763 1.00 85.70 N
ATOM 20 N1 A A 561 -7.505 88.087 124.137 1.00 86.99 N
ATOM 21 C2 A A 561 -8.669 87.423 124.097 1.00 87.43 C
ATOM 22 N3 A A 561 -9.862 87.785 124.567 1.00 87.74 N
ATOM 23 C4 A A 561 -9.795 88.997 125.147 1.00 87.93 C
ATOM 24 P G A 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 25 OP1 G A 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 26 OP2 G A 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 27 O5' G A 562 -11.484 87.106 130.117 1.00 88.58 O
TER
ATOM 1 O3' C B 559 -9.124 99.268 125.506 1.00 80.37 O
ATOM 2 P G B 560 -8.975 98.210 126.705 1.00 81.79 P
ATOM 3 OP1 G B 560 -9.390 98.901 127.952 1.00 81.79 O
ATOM 4 OP2 G B 560 -7.624 97.600 126.619 1.00 81.61 O
ATOM 5 O5' G B 560 -10.061 97.094 126.364 1.00 83.09 O
ATOM 6 C5' G B 560 -11.471 97.407 126.400 1.00 84.86 C
ATOM 7 C4' G B 560 -12.284 96.256 125.857 1.00 85.65 C
ATOM 8 O4' G B 560 -11.934 96.036 124.466 1.00 84.85 O
ATOM 9 C3' G B 560 -12.032 94.909 126.512 1.00 86.68 C
ATOM 10 O3' G B 560 -12.743 94.742 127.728 1.00 88.76 O
ATOM 11 C2' G B 560 -12.481 93.935 125.435 1.00 85.72 C
ATOM 12 O2' G B 560 -13.881 93.756 125.375 1.00 85.50 O
ATOM 13 C1' G B 560 -11.978 94.646 124.179 1.00 84.55 C
ATOM 14 N9 G B 560 -10.628 94.208 123.845 1.00 82.97 N
ATOM 15 C8 G B 560 -9.444 94.845 124.136 1.00 81.72 C
ATOM 16 N7 G B 560 -8.397 94.187 123.724 1.00 81.91 N
ATOM 17 C5 G B 560 -8.920 93.050 123.121 1.00 82.04 C
ATOM 18 C6 G B 560 -8.267 91.957 122.490 1.00 82.40 C
ATOM 19 O6 G B 560 -7.054 91.765 122.343 1.00 83.19 O
ATOM 20 N1 G B 560 -9.181 91.023 122.010 1.00 81.50 N
ATOM 21 C2 G B 560 -10.545 91.119 122.128 1.00 81.14 C
ATOM 22 N2 G B 560 -11.257 90.114 121.607 1.00 80.05 N
ATOM 23 N3 G B 560 -11.164 92.127 122.717 1.00 81.19 N
ATOM 24 C4 G B 560 -10.296 93.051 123.185 1.00 81.98 C
ATOM 25 P A B 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 26 OP1 A B 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 27 OP2 A B 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 28 O5' A B 561 -12.394 92.279 128.155 1.00 89.02 O
TER
ATOM 2 P A A 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 3 OP1 A A 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 4 OP2 A A 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 5 O5' A A 561 -12.394 92.279 128.155 1.00 89.02 O
ATOM 6 C5' A A 561 -13.703 91.699 128.028 1.00 87.84 C
ATOM 7 C4' A A 561 -13.597 90.296 127.494 1.00 88.23 C
ATOM 8 O4' A A 561 -13.034 90.346 126.156 1.00 89.63 O
ATOM 9 C3' A A 561 -12.645 89.379 128.245 1.00 89.19 C
ATOM 10 O3' A A 561 -13.205 88.828 129.431 1.00 90.19 O
ATOM 11 C2' A A 561 -12.309 88.335 127.188 1.00 89.43 C
ATOM 12 O2' A A 561 -13.312 87.354 126.995 1.00 88.28 O
ATOM 13 C1' A A 561 -12.193 89.217 125.943 1.00 89.47 C
ATOM 14 N9 A A 561 -10.815 89.687 125.761 1.00 89.08 N
ATOM 15 C8 A A 561 -10.259 90.873 126.187 1.00 88.50 C
ATOM 16 N7 A A 561 -8.981 90.983 125.920 1.00 87.50 N
ATOM 17 C5 A A 561 -8.673 89.799 125.263 1.00 87.17 C
ATOM 18 C6 A A 561 -7.474 89.302 124.724 1.00 86.62 C
ATOM 19 N6 A A 561 -6.315 89.962 124.763 1.00 85.70 N
ATOM 20 N1 A A 561 -7.505 88.087 124.137 1.00 86.99 N
ATOM 21 C2 A A 561 -8.669 87.423 124.097 1.00 87.43 C
ATOM 22 N3 A A 561 -9.862 87.785 124.567 1.00 87.74 N
ATOM 23 C4 A A 561 -9.795 88.997 125.147 1.00 87.93 C
ATOM 24 P G A 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 25 OP1 G A 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 26 OP2 G A 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 27 O5' G A 562 -11.484 87.106 130.117 1.00 88.58 O
TER
ATOM 1 O3' C B 559 -9.124 99.268 125.506 1.00 80.37 O
ATOM 2 P G B 560 -8.975 98.210 126.705 1.00 81.79 P
ATOM 3 OP1 G B 560 -9.390 98.901 127.952 1.00 81.79 O
ATOM 4 OP2 G B 560 -7.624 97.600 126.619 1.00 81.61 O
ATOM 5 O5' G B 560 -10.061 97.094 126.364 1.00 83.09 O
ATOM 6 C5' G B 560 -11.471 97.407 126.400 1.00 84.86 C
ATOM 7 C4' G B 560 -12.284 96.256 125.857 1.00 85.65 C
ATOM 8 O4' G B 560 -11.934 96.036 124.466 1.00 84.85 O
ATOM 9 C3' G B 560 -12.032 94.909 126.512 1.00 86.68 C
ATOM 10 O3' G B 560 -12.743 94.742 127.728 1.00 88.76 O
ATOM 11 C2' G B 560 -12.481 93.935 125.435 1.00 85.72 C
ATOM 12 O2' G B 560 -13.881 93.756 125.375 1.00 85.50 O
ATOM 13 C1' G B 560 -11.978 94.646 124.179 1.00 84.55 C
ATOM 14 N9 G B 560 -10.628 94.208 123.845 1.00 82.97 N
ATOM 15 C8 G B 560 -9.444 94.845 124.136 1.00 81.72 C
ATOM 16 N7 G B 560 -8.397 94.187 123.724 1.00 81.91 N
ATOM 17 C5 G B 560 -8.920 93.050 123.121 1.00 82.04 C
ATOM 18 C6 G B 560 -8.267 91.957 122.490 1.00 82.40 C
ATOM 19 O6 G B 560 -7.054 91.765 122.343 1.00 83.19 O
ATOM 20 N1 G B 560 -9.181 91.023 122.010 1.00 81.50 N
ATOM 21 C2 G B 560 -10.545 91.119 122.128 1.00 81.14 C
ATOM 22 N2 G B 560 -11.257 90.114 121.607 1.00 80.05 N
ATOM 23 N3 G B 560 -11.164 92.127 122.717 1.00 81.19 N
ATOM 24 C4 G B 560 -10.296 93.051 123.185 1.00 81.98 C
ATOM 25 P A B 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 26 OP1 A B 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 27 OP2 A B 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 28 O5' A B 561 -12.394 92.279 128.155 1.00 89.02 O
TER
Atoms:
OP1: (-13.088,93.826,130.005)
OP2: (-10.730,93.940,128.995)
C3': (-12.645,89.379,128.245)
C1': (-12.193,89.217,125.943)
C5': (-13.703,91.699,128.028)
O4': (-13.034,90.346,126.156)
C8: (-10.259,90.873,126.187)
O2': (-13.312,87.354,126.995)
C6: (-7.474,89.302,124.724)
C5: (-8.673,89.799,125.263)
C4: (-9.795,88.997,125.147)
P: (-12.190,93.711,128.828)
C4': (-13.597,90.296,127.494)
C2': (-12.309,88.335,127.188)
C2: (-8.669,87.423,124.097)
N1: (-7.505,88.087,124.137)
N3: (-9.862,87.785,124.567)
N6: (-6.315,89.962,124.763)
N7: (-8.981,90.983,125.920)
N9: (-10.815,89.687,125.761)
O5': (-12.394,92.279,128.155)
O3': (-13.205,88.828,129.431)
OP2: (-10.730,93.940,128.995)
C3': (-12.645,89.379,128.245)
C1': (-12.193,89.217,125.943)
C5': (-13.703,91.699,128.028)
O4': (-13.034,90.346,126.156)
C8: (-10.259,90.873,126.187)
O2': (-13.312,87.354,126.995)
C6: (-7.474,89.302,124.724)
C5: (-8.673,89.799,125.263)
C4: (-9.795,88.997,125.147)
P: (-12.190,93.711,128.828)
C4': (-13.597,90.296,127.494)
C2': (-12.309,88.335,127.188)
C2: (-8.669,87.423,124.097)
N1: (-7.505,88.087,124.137)
N3: (-9.862,87.785,124.567)
N6: (-6.315,89.962,124.763)
N7: (-8.981,90.983,125.920)
N9: (-10.815,89.687,125.761)
O5': (-12.394,92.279,128.155)
O3': (-13.205,88.828,129.431)
OP1: (-9.390,98.901,127.952)
OP2: (-7.624,97.600,126.619)
C3': (-12.032,94.909,126.512)
C1': (-11.978,94.646,124.179)
C5': (-11.471,97.407,126.400)
O6: (-7.054,91.765,122.343)
O4': (-11.934,96.036,124.466)
C8: (-9.444,94.845,124.136)
C2: (-10.545,91.119,122.128)
C6: (-8.267,91.957,122.490)
C5: (-8.920,93.050,123.121)
C4: (-10.296,93.051,123.185)
P: (-8.975,98.210,126.705)
C4': (-12.284,96.256,125.857)
C2': (-12.481,93.935,125.435)
O2': (-13.881,93.756,125.375)
N1: (-9.181,91.023,122.010)
N2: (-11.257,90.114,121.607)
N3: (-11.164,92.127,122.717)
N7: (-8.397,94.187,123.724)
N9: (-10.628,94.208,123.845)
O5': (-10.061,97.094,126.364)
O3': (-12.743,94.742,127.728)
OP2: (-7.624,97.600,126.619)
C3': (-12.032,94.909,126.512)
C1': (-11.978,94.646,124.179)
C5': (-11.471,97.407,126.400)
O6: (-7.054,91.765,122.343)
O4': (-11.934,96.036,124.466)
C8: (-9.444,94.845,124.136)
C2: (-10.545,91.119,122.128)
C6: (-8.267,91.957,122.490)
C5: (-8.920,93.050,123.121)
C4: (-10.296,93.051,123.185)
P: (-8.975,98.210,126.705)
C4': (-12.284,96.256,125.857)
C2': (-12.481,93.935,125.435)
O2': (-13.881,93.756,125.375)
N1: (-9.181,91.023,122.010)
N2: (-11.257,90.114,121.607)
N3: (-11.164,92.127,122.717)
N7: (-8.397,94.187,123.724)
N9: (-10.628,94.208,123.845)
O5': (-10.061,97.094,126.364)
O3': (-12.743,94.742,127.728)
Image (generated by PyMOL):