Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2OTJ:0561:0560
Extra
PDB:
ATOM 1 O3' G A 560 -12.830 93.759 127.493 1.00 94.14 O
ATOM 2 P A A 561 -12.363 92.557 128.460 1.00 95.00 P
ATOM 3 OP1 A A 561 -13.273 92.556 129.631 1.00 95.38 O
ATOM 4 OP2 A A 561 -10.895 92.654 128.677 1.00 94.90 O
ATOM 5 O5' A A 561 -12.643 91.242 127.607 1.00 94.25 O
ATOM 6 C5' A A 561 -13.936 90.625 127.604 1.00 94.37 C
ATOM 7 C4' A A 561 -13.810 89.188 127.181 1.00 94.87 C
ATOM 8 O4' A A 561 -13.302 89.158 125.820 1.00 95.58 O
ATOM 9 C3' A A 561 -12.790 88.376 127.965 1.00 95.44 C
ATOM 10 O3' A A 561 -13.285 87.882 129.208 1.00 95.95 O
ATOM 11 C2' A A 561 -12.430 87.280 126.973 1.00 95.57 C
ATOM 12 O2' A A 561 -13.401 86.256 126.881 1.00 95.15 O
ATOM 13 C1' A A 561 -12.386 88.079 125.670 1.00 95.48 C
ATOM 14 N9 A A 561 -11.047 88.638 125.456 1.00 95.30 N
ATOM 15 C8 A A 561 -10.557 89.849 125.892 1.00 95.13 C
ATOM 16 N7 A A 561 -9.293 90.042 125.603 1.00 94.86 N
ATOM 17 C5 A A 561 -8.928 88.890 124.917 1.00 95.00 C
ATOM 18 C6 A A 561 -7.707 88.470 124.348 1.00 94.84 C
ATOM 19 N6 A A 561 -6.582 89.189 124.389 1.00 94.52 N
ATOM 20 N1 A A 561 -7.683 87.266 123.732 1.00 94.75 N
ATOM 21 C2 A A 561 -8.809 86.541 123.697 1.00 94.84 C
ATOM 22 N3 A A 561 -10.011 86.823 124.198 1.00 95.05 N
ATOM 23 C4 A A 561 -10.003 88.025 124.804 1.00 95.10 C
ATOM 24 P C A 562 -12.247 87.444 130.363 1.00 95.78 P
ATOM 25 OP1 C A 562 -13.041 86.921 131.500 1.00 96.18 O
ATOM 26 OP2 C A 562 -11.279 88.551 130.596 1.00 96.20 O
ATOM 27 O5' C A 562 -11.461 86.221 129.716 1.00 95.12 O
TER
ATOM 1 O3' C B 559 -9.193 98.409 125.408 1.00 87.89 O
ATOM 2 P G B 560 -9.047 97.268 126.532 1.00 89.78 P
ATOM 3 OP1 G B 560 -9.455 97.879 127.823 1.00 89.61 O
ATOM 4 OP2 G B 560 -7.699 96.658 126.407 1.00 89.70 O
ATOM 5 O5' G B 560 -10.140 96.179 126.116 1.00 90.56 O
ATOM 6 C5' G B 560 -11.553 96.481 126.208 1.00 92.08 C
ATOM 7 C4' G B 560 -12.386 95.344 125.654 1.00 92.47 C
ATOM 8 O4' G B 560 -12.079 95.161 124.246 1.00 92.31 O
ATOM 9 C3' G B 560 -12.153 93.966 126.256 1.00 93.09 C
ATOM 10 O3' G B 560 -12.830 93.759 127.493 1.00 94.14 O
ATOM 11 C2' G B 560 -12.672 93.047 125.160 1.00 92.66 C
ATOM 12 O2' G B 560 -14.080 92.921 125.155 1.00 92.56 O
ATOM 13 C1' G B 560 -12.195 93.787 123.908 1.00 92.05 C
ATOM 14 N9 G B 560 -10.885 93.309 123.479 1.00 91.45 N
ATOM 15 C8 G B 560 -9.670 93.930 123.658 1.00 91.03 C
ATOM 16 N7 G B 560 -8.668 93.240 123.182 1.00 90.93 N
ATOM 17 C5 G B 560 -9.259 92.098 122.652 1.00 90.92 C
ATOM 18 C6 G B 560 -8.677 90.975 121.999 1.00 90.97 C
ATOM 19 O6 G B 560 -7.485 90.762 121.745 1.00 91.04 O
ATOM 20 N1 G B 560 -9.642 90.042 121.631 1.00 90.66 N
ATOM 21 C2 G B 560 -10.988 90.168 121.857 1.00 90.49 C
ATOM 22 N2 G B 560 -11.752 89.155 121.436 1.00 90.37 N
ATOM 23 N3 G B 560 -11.544 91.209 122.454 1.00 90.66 N
ATOM 24 C4 G B 560 -10.626 92.128 122.825 1.00 90.92 C
ATOM 25 P A B 561 -12.363 92.557 128.460 1.00 95.00 P
ATOM 26 OP1 A B 561 -13.273 92.556 129.631 1.00 95.38 O
ATOM 27 OP2 A B 561 -10.895 92.654 128.677 1.00 94.90 O
ATOM 28 O5' A B 561 -12.643 91.242 127.607 1.00 94.25 O
TER
ATOM 2 P A A 561 -12.363 92.557 128.460 1.00 95.00 P
ATOM 3 OP1 A A 561 -13.273 92.556 129.631 1.00 95.38 O
ATOM 4 OP2 A A 561 -10.895 92.654 128.677 1.00 94.90 O
ATOM 5 O5' A A 561 -12.643 91.242 127.607 1.00 94.25 O
ATOM 6 C5' A A 561 -13.936 90.625 127.604 1.00 94.37 C
ATOM 7 C4' A A 561 -13.810 89.188 127.181 1.00 94.87 C
ATOM 8 O4' A A 561 -13.302 89.158 125.820 1.00 95.58 O
ATOM 9 C3' A A 561 -12.790 88.376 127.965 1.00 95.44 C
ATOM 10 O3' A A 561 -13.285 87.882 129.208 1.00 95.95 O
ATOM 11 C2' A A 561 -12.430 87.280 126.973 1.00 95.57 C
ATOM 12 O2' A A 561 -13.401 86.256 126.881 1.00 95.15 O
ATOM 13 C1' A A 561 -12.386 88.079 125.670 1.00 95.48 C
ATOM 14 N9 A A 561 -11.047 88.638 125.456 1.00 95.30 N
ATOM 15 C8 A A 561 -10.557 89.849 125.892 1.00 95.13 C
ATOM 16 N7 A A 561 -9.293 90.042 125.603 1.00 94.86 N
ATOM 17 C5 A A 561 -8.928 88.890 124.917 1.00 95.00 C
ATOM 18 C6 A A 561 -7.707 88.470 124.348 1.00 94.84 C
ATOM 19 N6 A A 561 -6.582 89.189 124.389 1.00 94.52 N
ATOM 20 N1 A A 561 -7.683 87.266 123.732 1.00 94.75 N
ATOM 21 C2 A A 561 -8.809 86.541 123.697 1.00 94.84 C
ATOM 22 N3 A A 561 -10.011 86.823 124.198 1.00 95.05 N
ATOM 23 C4 A A 561 -10.003 88.025 124.804 1.00 95.10 C
ATOM 24 P C A 562 -12.247 87.444 130.363 1.00 95.78 P
ATOM 25 OP1 C A 562 -13.041 86.921 131.500 1.00 96.18 O
ATOM 26 OP2 C A 562 -11.279 88.551 130.596 1.00 96.20 O
ATOM 27 O5' C A 562 -11.461 86.221 129.716 1.00 95.12 O
TER
ATOM 1 O3' C B 559 -9.193 98.409 125.408 1.00 87.89 O
ATOM 2 P G B 560 -9.047 97.268 126.532 1.00 89.78 P
ATOM 3 OP1 G B 560 -9.455 97.879 127.823 1.00 89.61 O
ATOM 4 OP2 G B 560 -7.699 96.658 126.407 1.00 89.70 O
ATOM 5 O5' G B 560 -10.140 96.179 126.116 1.00 90.56 O
ATOM 6 C5' G B 560 -11.553 96.481 126.208 1.00 92.08 C
ATOM 7 C4' G B 560 -12.386 95.344 125.654 1.00 92.47 C
ATOM 8 O4' G B 560 -12.079 95.161 124.246 1.00 92.31 O
ATOM 9 C3' G B 560 -12.153 93.966 126.256 1.00 93.09 C
ATOM 10 O3' G B 560 -12.830 93.759 127.493 1.00 94.14 O
ATOM 11 C2' G B 560 -12.672 93.047 125.160 1.00 92.66 C
ATOM 12 O2' G B 560 -14.080 92.921 125.155 1.00 92.56 O
ATOM 13 C1' G B 560 -12.195 93.787 123.908 1.00 92.05 C
ATOM 14 N9 G B 560 -10.885 93.309 123.479 1.00 91.45 N
ATOM 15 C8 G B 560 -9.670 93.930 123.658 1.00 91.03 C
ATOM 16 N7 G B 560 -8.668 93.240 123.182 1.00 90.93 N
ATOM 17 C5 G B 560 -9.259 92.098 122.652 1.00 90.92 C
ATOM 18 C6 G B 560 -8.677 90.975 121.999 1.00 90.97 C
ATOM 19 O6 G B 560 -7.485 90.762 121.745 1.00 91.04 O
ATOM 20 N1 G B 560 -9.642 90.042 121.631 1.00 90.66 N
ATOM 21 C2 G B 560 -10.988 90.168 121.857 1.00 90.49 C
ATOM 22 N2 G B 560 -11.752 89.155 121.436 1.00 90.37 N
ATOM 23 N3 G B 560 -11.544 91.209 122.454 1.00 90.66 N
ATOM 24 C4 G B 560 -10.626 92.128 122.825 1.00 90.92 C
ATOM 25 P A B 561 -12.363 92.557 128.460 1.00 95.00 P
ATOM 26 OP1 A B 561 -13.273 92.556 129.631 1.00 95.38 O
ATOM 27 OP2 A B 561 -10.895 92.654 128.677 1.00 94.90 O
ATOM 28 O5' A B 561 -12.643 91.242 127.607 1.00 94.25 O
TER
Atoms:
OP1: (-13.273,92.556,129.631)
OP2: (-10.895,92.654,128.677)
C3': (-12.790,88.376,127.965)
C1': (-12.386,88.079,125.670)
C5': (-13.936,90.625,127.604)
O4': (-13.302,89.158,125.820)
C8: (-10.557,89.849,125.892)
O2': (-13.401,86.256,126.881)
C6: (-7.707,88.470,124.348)
C5: (-8.928,88.890,124.917)
C4: (-10.003,88.025,124.804)
P: (-12.363,92.557,128.460)
C4': (-13.810,89.188,127.181)
C2': (-12.430,87.280,126.973)
C2: (-8.809,86.541,123.697)
N1: (-7.683,87.266,123.732)
N3: (-10.011,86.823,124.198)
N6: (-6.582,89.189,124.389)
N7: (-9.293,90.042,125.603)
N9: (-11.047,88.638,125.456)
O5': (-12.643,91.242,127.607)
O3': (-13.285,87.882,129.208)
OP2: (-10.895,92.654,128.677)
C3': (-12.790,88.376,127.965)
C1': (-12.386,88.079,125.670)
C5': (-13.936,90.625,127.604)
O4': (-13.302,89.158,125.820)
C8: (-10.557,89.849,125.892)
O2': (-13.401,86.256,126.881)
C6: (-7.707,88.470,124.348)
C5: (-8.928,88.890,124.917)
C4: (-10.003,88.025,124.804)
P: (-12.363,92.557,128.460)
C4': (-13.810,89.188,127.181)
C2': (-12.430,87.280,126.973)
C2: (-8.809,86.541,123.697)
N1: (-7.683,87.266,123.732)
N3: (-10.011,86.823,124.198)
N6: (-6.582,89.189,124.389)
N7: (-9.293,90.042,125.603)
N9: (-11.047,88.638,125.456)
O5': (-12.643,91.242,127.607)
O3': (-13.285,87.882,129.208)
OP1: (-9.455,97.879,127.823)
OP2: (-7.699,96.658,126.407)
C3': (-12.153,93.966,126.256)
C1': (-12.195,93.787,123.908)
C5': (-11.553,96.481,126.208)
O6: (-7.485,90.762,121.745)
O4': (-12.079,95.161,124.246)
C8: (-9.670,93.930,123.658)
C2: (-10.988,90.168,121.857)
C6: (-8.677,90.975,121.999)
C5: (-9.259,92.098,122.652)
C4: (-10.626,92.128,122.825)
P: (-9.047,97.268,126.532)
C4': (-12.386,95.344,125.654)
C2': (-12.672,93.047,125.160)
O2': (-14.080,92.921,125.155)
N1: (-9.642,90.042,121.631)
N2: (-11.752,89.155,121.436)
N3: (-11.544,91.209,122.454)
N7: (-8.668,93.240,123.182)
N9: (-10.885,93.309,123.479)
O5': (-10.140,96.179,126.116)
O3': (-12.830,93.759,127.493)
OP2: (-7.699,96.658,126.407)
C3': (-12.153,93.966,126.256)
C1': (-12.195,93.787,123.908)
C5': (-11.553,96.481,126.208)
O6: (-7.485,90.762,121.745)
O4': (-12.079,95.161,124.246)
C8: (-9.670,93.930,123.658)
C2: (-10.988,90.168,121.857)
C6: (-8.677,90.975,121.999)
C5: (-9.259,92.098,122.652)
C4: (-10.626,92.128,122.825)
P: (-9.047,97.268,126.532)
C4': (-12.386,95.344,125.654)
C2': (-12.672,93.047,125.160)
O2': (-14.080,92.921,125.155)
N1: (-9.642,90.042,121.631)
N2: (-11.752,89.155,121.436)
N3: (-11.544,91.209,122.454)
N7: (-8.668,93.240,123.182)
N9: (-10.885,93.309,123.479)
O5': (-10.140,96.179,126.116)
O3': (-12.830,93.759,127.493)
Image (generated by PyMOL):