Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:C10:C9
Extra
PDB:
ATOM 1 O3' A A 9 16.840 40.872 28.817 1.00 36.17 O
ATOM 2 P G A 10 17.162 40.069 30.176 1.00 38.57 P
ATOM 3 OP1 G A 10 16.434 40.789 31.255 1.00 38.96 O
ATOM 4 OP2 G A 10 18.628 39.872 30.290 1.00 38.05 O
ATOM 5 O5' G A 10 16.482 38.645 29.935 1.00 35.90 O
ATOM 6 C5' G A 10 15.128 38.570 29.502 1.00 33.26 C
ATOM 7 C4' G A 10 14.802 37.198 28.954 1.00 32.11 C
ATOM 8 O4' G A 10 15.507 36.970 27.710 1.00 31.43 O
ATOM 9 C3' G A 10 15.157 35.987 29.803 1.00 30.07 C
ATOM 10 O3' G A 10 14.176 35.784 30.808 1.00 29.29 O
ATOM 11 C2' G A 10 15.107 34.881 28.759 1.00 29.36 C
ATOM 12 O2' G A 10 13.792 34.516 28.411 1.00 31.00 O
ATOM 13 C1' G A 10 15.744 35.581 27.559 1.00 30.13 C
ATOM 14 N9 G A 10 17.180 35.347 27.554 1.00 28.24 N
ATOM 15 C8 G A 10 18.175 36.192 27.970 1.00 27.71 C
ATOM 16 N7 G A 10 19.366 35.673 27.850 1.00 28.21 N
ATOM 17 C5 G A 10 19.136 34.413 27.316 1.00 27.51 C
ATOM 18 C6 G A 10 20.042 33.390 26.948 1.00 26.91 C
ATOM 19 O6 G A 10 21.268 33.397 27.011 1.00 25.82 O
ATOM 20 N1 G A 10 19.378 32.268 26.461 1.00 28.96 N
ATOM 21 C2 G A 10 18.012 32.148 26.345 1.00 28.83 C
ATOM 22 N2 G A 10 17.552 30.980 25.888 1.00 27.65 N
ATOM 23 N3 G A 10 17.162 33.103 26.665 1.00 27.91 N
ATOM 24 C4 G A 10 17.790 34.199 27.138 1.00 27.63 C
ATOM 25 P U A 11 14.566 35.048 32.187 1.00 29.23 P
ATOM 26 OP1 U A 11 13.420 35.328 33.096 1.00 30.56 O
ATOM 27 OP2 U A 11 15.940 35.398 32.615 1.00 26.69 O
ATOM 28 O5' U A 11 14.538 33.499 31.808 1.00 28.91 O
TER
ATOM 1 O3' A B 8 21.821 43.268 26.393 1.00 33.47 O
ATOM 2 P A B 9 21.580 42.440 27.752 1.00 36.10 P
ATOM 3 OP1 A B 9 21.441 43.423 28.859 1.00 36.91 O
ATOM 4 OP2 A B 9 22.587 41.352 27.860 1.00 35.94 O
ATOM 5 O5' A B 9 20.156 41.781 27.508 1.00 34.68 O
ATOM 6 C5' A B 9 19.038 42.603 27.257 1.00 32.82 C
ATOM 7 C4' A B 9 17.877 41.775 26.795 1.00 34.04 C
ATOM 8 O4' A B 9 18.148 41.226 25.475 1.00 32.88 O
ATOM 9 C3' A B 9 17.550 40.546 27.625 1.00 34.84 C
ATOM 10 O3' A B 9 16.840 40.872 28.817 1.00 36.17 O
ATOM 11 C2' A B 9 16.696 39.769 26.635 1.00 33.75 C
ATOM 12 O2' A B 9 15.425 40.357 26.475 1.00 34.26 O
ATOM 13 C1' A B 9 17.498 39.969 25.348 1.00 32.43 C
ATOM 14 N9 A B 9 18.523 38.934 25.223 1.00 30.74 N
ATOM 15 C8 A B 9 19.853 39.010 25.556 1.00 28.20 C
ATOM 16 N7 A B 9 20.513 37.902 25.338 1.00 27.35 N
ATOM 17 C5 A B 9 19.555 37.037 24.827 1.00 27.43 C
ATOM 18 C6 A B 9 19.618 35.701 24.390 1.00 25.40 C
ATOM 19 N6 A B 9 20.734 34.968 24.405 1.00 23.22 N
ATOM 20 N1 A B 9 18.480 35.137 23.935 1.00 26.15 N
ATOM 21 C2 A B 9 17.359 35.866 23.930 1.00 27.73 C
ATOM 22 N3 A B 9 17.173 37.125 24.314 1.00 28.28 N
ATOM 23 C4 A B 9 18.325 37.661 24.752 1.00 27.86 C
ATOM 24 P G B 10 17.162 40.069 30.176 1.00 38.57 P
ATOM 25 OP1 G B 10 16.434 40.789 31.255 1.00 38.96 O
ATOM 26 OP2 G B 10 18.628 39.872 30.290 1.00 38.05 O
ATOM 27 O5' G B 10 16.482 38.645 29.935 1.00 35.90 O
TER
ATOM 2 P G A 10 17.162 40.069 30.176 1.00 38.57 P
ATOM 3 OP1 G A 10 16.434 40.789 31.255 1.00 38.96 O
ATOM 4 OP2 G A 10 18.628 39.872 30.290 1.00 38.05 O
ATOM 5 O5' G A 10 16.482 38.645 29.935 1.00 35.90 O
ATOM 6 C5' G A 10 15.128 38.570 29.502 1.00 33.26 C
ATOM 7 C4' G A 10 14.802 37.198 28.954 1.00 32.11 C
ATOM 8 O4' G A 10 15.507 36.970 27.710 1.00 31.43 O
ATOM 9 C3' G A 10 15.157 35.987 29.803 1.00 30.07 C
ATOM 10 O3' G A 10 14.176 35.784 30.808 1.00 29.29 O
ATOM 11 C2' G A 10 15.107 34.881 28.759 1.00 29.36 C
ATOM 12 O2' G A 10 13.792 34.516 28.411 1.00 31.00 O
ATOM 13 C1' G A 10 15.744 35.581 27.559 1.00 30.13 C
ATOM 14 N9 G A 10 17.180 35.347 27.554 1.00 28.24 N
ATOM 15 C8 G A 10 18.175 36.192 27.970 1.00 27.71 C
ATOM 16 N7 G A 10 19.366 35.673 27.850 1.00 28.21 N
ATOM 17 C5 G A 10 19.136 34.413 27.316 1.00 27.51 C
ATOM 18 C6 G A 10 20.042 33.390 26.948 1.00 26.91 C
ATOM 19 O6 G A 10 21.268 33.397 27.011 1.00 25.82 O
ATOM 20 N1 G A 10 19.378 32.268 26.461 1.00 28.96 N
ATOM 21 C2 G A 10 18.012 32.148 26.345 1.00 28.83 C
ATOM 22 N2 G A 10 17.552 30.980 25.888 1.00 27.65 N
ATOM 23 N3 G A 10 17.162 33.103 26.665 1.00 27.91 N
ATOM 24 C4 G A 10 17.790 34.199 27.138 1.00 27.63 C
ATOM 25 P U A 11 14.566 35.048 32.187 1.00 29.23 P
ATOM 26 OP1 U A 11 13.420 35.328 33.096 1.00 30.56 O
ATOM 27 OP2 U A 11 15.940 35.398 32.615 1.00 26.69 O
ATOM 28 O5' U A 11 14.538 33.499 31.808 1.00 28.91 O
TER
ATOM 1 O3' A B 8 21.821 43.268 26.393 1.00 33.47 O
ATOM 2 P A B 9 21.580 42.440 27.752 1.00 36.10 P
ATOM 3 OP1 A B 9 21.441 43.423 28.859 1.00 36.91 O
ATOM 4 OP2 A B 9 22.587 41.352 27.860 1.00 35.94 O
ATOM 5 O5' A B 9 20.156 41.781 27.508 1.00 34.68 O
ATOM 6 C5' A B 9 19.038 42.603 27.257 1.00 32.82 C
ATOM 7 C4' A B 9 17.877 41.775 26.795 1.00 34.04 C
ATOM 8 O4' A B 9 18.148 41.226 25.475 1.00 32.88 O
ATOM 9 C3' A B 9 17.550 40.546 27.625 1.00 34.84 C
ATOM 10 O3' A B 9 16.840 40.872 28.817 1.00 36.17 O
ATOM 11 C2' A B 9 16.696 39.769 26.635 1.00 33.75 C
ATOM 12 O2' A B 9 15.425 40.357 26.475 1.00 34.26 O
ATOM 13 C1' A B 9 17.498 39.969 25.348 1.00 32.43 C
ATOM 14 N9 A B 9 18.523 38.934 25.223 1.00 30.74 N
ATOM 15 C8 A B 9 19.853 39.010 25.556 1.00 28.20 C
ATOM 16 N7 A B 9 20.513 37.902 25.338 1.00 27.35 N
ATOM 17 C5 A B 9 19.555 37.037 24.827 1.00 27.43 C
ATOM 18 C6 A B 9 19.618 35.701 24.390 1.00 25.40 C
ATOM 19 N6 A B 9 20.734 34.968 24.405 1.00 23.22 N
ATOM 20 N1 A B 9 18.480 35.137 23.935 1.00 26.15 N
ATOM 21 C2 A B 9 17.359 35.866 23.930 1.00 27.73 C
ATOM 22 N3 A B 9 17.173 37.125 24.314 1.00 28.28 N
ATOM 23 C4 A B 9 18.325 37.661 24.752 1.00 27.86 C
ATOM 24 P G B 10 17.162 40.069 30.176 1.00 38.57 P
ATOM 25 OP1 G B 10 16.434 40.789 31.255 1.00 38.96 O
ATOM 26 OP2 G B 10 18.628 39.872 30.290 1.00 38.05 O
ATOM 27 O5' G B 10 16.482 38.645 29.935 1.00 35.90 O
TER
Atoms:
OP1: (16.434,40.789,31.255)
OP2: (18.628,39.872,30.290)
C3': (15.157,35.987,29.803)
C1': (15.744,35.581,27.559)
C5': (15.128,38.570,29.502)
O6: (21.268,33.397,27.011)
O4': (15.507,36.970,27.710)
C8: (18.175,36.192,27.970)
C2: (18.012,32.148,26.345)
C6: (20.042,33.390,26.948)
C5: (19.136,34.413,27.316)
C4: (17.790,34.199,27.138)
P: (17.162,40.069,30.176)
C4': (14.802,37.198,28.954)
C2': (15.107,34.881,28.759)
O2': (13.792,34.516,28.411)
N1: (19.378,32.268,26.461)
N2: (17.552,30.980,25.888)
N3: (17.162,33.103,26.665)
N7: (19.366,35.673,27.850)
N9: (17.180,35.347,27.554)
O5': (16.482,38.645,29.935)
O3': (14.176,35.784,30.808)
OP2: (18.628,39.872,30.290)
C3': (15.157,35.987,29.803)
C1': (15.744,35.581,27.559)
C5': (15.128,38.570,29.502)
O6: (21.268,33.397,27.011)
O4': (15.507,36.970,27.710)
C8: (18.175,36.192,27.970)
C2: (18.012,32.148,26.345)
C6: (20.042,33.390,26.948)
C5: (19.136,34.413,27.316)
C4: (17.790,34.199,27.138)
P: (17.162,40.069,30.176)
C4': (14.802,37.198,28.954)
C2': (15.107,34.881,28.759)
O2': (13.792,34.516,28.411)
N1: (19.378,32.268,26.461)
N2: (17.552,30.980,25.888)
N3: (17.162,33.103,26.665)
N7: (19.366,35.673,27.850)
N9: (17.180,35.347,27.554)
O5': (16.482,38.645,29.935)
O3': (14.176,35.784,30.808)
OP1: (21.441,43.423,28.859)
OP2: (22.587,41.352,27.860)
C3': (17.550,40.546,27.625)
C1': (17.498,39.969,25.348)
C5': (19.038,42.603,27.257)
O4': (18.148,41.226,25.475)
C8: (19.853,39.010,25.556)
O2': (15.425,40.357,26.475)
C6: (19.618,35.701,24.390)
C5: (19.555,37.037,24.827)
C4: (18.325,37.661,24.752)
P: (21.580,42.440,27.752)
C4': (17.877,41.775,26.795)
C2': (16.696,39.769,26.635)
C2: (17.359,35.866,23.930)
N1: (18.480,35.137,23.935)
N3: (17.173,37.125,24.314)
N6: (20.734,34.968,24.405)
N7: (20.513,37.902,25.338)
N9: (18.523,38.934,25.223)
O5': (20.156,41.781,27.508)
O3': (16.840,40.872,28.817)
OP2: (22.587,41.352,27.860)
C3': (17.550,40.546,27.625)
C1': (17.498,39.969,25.348)
C5': (19.038,42.603,27.257)
O4': (18.148,41.226,25.475)
C8: (19.853,39.010,25.556)
O2': (15.425,40.357,26.475)
C6: (19.618,35.701,24.390)
C5: (19.555,37.037,24.827)
C4: (18.325,37.661,24.752)
P: (21.580,42.440,27.752)
C4': (17.877,41.775,26.795)
C2': (16.696,39.769,26.635)
C2: (17.359,35.866,23.930)
N1: (18.480,35.137,23.935)
N3: (17.173,37.125,24.314)
N6: (20.734,34.968,24.405)
N7: (20.513,37.902,25.338)
N9: (18.523,38.934,25.223)
O5': (20.156,41.781,27.508)
O3': (16.840,40.872,28.817)
Image (generated by PyMOL):