Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NJ7:F5:F6
Extra
PDB:
ATOM 1 O3' G A 4 -2.289 -38.074 9.462 1.00 32.10 O
ATOM 2 P C A 5 -1.558 -37.509 10.770 1.00 39.28 P
ATOM 3 OP1 C A 5 -1.919 -38.431 11.871 1.00 35.65 O
ATOM 4 OP2 C A 5 -1.736 -36.042 10.920 1.00 34.66 O
ATOM 5 O5' C A 5 -0.041 -37.716 10.332 1.00 36.79 O
ATOM 6 C5' C A 5 0.399 -38.969 9.867 1.00 36.38 C
ATOM 7 C4' C A 5 1.804 -38.779 9.360 1.00 35.62 C
ATOM 8 O4' C A 5 1.838 -37.814 8.279 1.00 33.86 O
ATOM 9 C3' C A 5 2.690 -38.142 10.402 1.00 32.68 C
ATOM 10 O3' C A 5 3.036 -39.124 11.361 1.00 30.38 O
ATOM 11 C2' C A 5 3.850 -37.739 9.509 1.00 31.61 C
ATOM 12 O2' C A 5 4.600 -38.865 9.104 1.00 32.01 O
ATOM 13 C1' C A 5 3.104 -37.172 8.304 1.00 30.78 C
ATOM 14 N1 C A 5 2.950 -35.670 8.301 1.00 29.78 N
ATOM 15 C2 C A 5 4.084 -34.888 8.018 1.00 29.58 C
ATOM 16 O2 C A 5 5.169 -35.454 7.797 1.00 27.27 O
ATOM 17 N3 C A 5 3.969 -33.537 8.005 1.00 25.91 N
ATOM 18 C4 C A 5 2.783 -32.972 8.255 1.00 28.21 C
ATOM 19 N4 C A 5 2.727 -31.637 8.225 1.00 25.95 N
ATOM 20 C5 C A 5 1.613 -33.745 8.545 1.00 27.49 C
ATOM 21 C6 C A 5 1.744 -35.078 8.558 1.00 28.41 C
ATOM 22 P A A 6 3.314 -38.698 12.877 1.00 34.88 P
ATOM 23 OP1 A A 6 3.669 -39.942 13.595 1.00 33.08 O
ATOM 24 OP2 A A 6 2.228 -37.820 13.368 1.00 33.45 O
ATOM 25 O5' A A 6 4.608 -37.771 12.739 1.00 26.63 O
TER
ATOM 1 O3' C B 5 3.036 -39.124 11.361 1.00 30.38 O
ATOM 2 P A B 6 3.314 -38.698 12.877 1.00 34.88 P
ATOM 3 OP1 A B 6 3.669 -39.942 13.595 1.00 33.08 O
ATOM 4 OP2 A B 6 2.228 -37.820 13.368 1.00 33.45 O
ATOM 5 O5' A B 6 4.608 -37.771 12.739 1.00 26.63 O
ATOM 6 C5' A B 6 5.831 -38.373 12.384 1.00 30.49 C
ATOM 7 C4' A B 6 6.870 -37.296 12.145 1.00 27.88 C
ATOM 8 O4' A B 6 6.521 -36.512 10.978 1.00 26.78 O
ATOM 9 C3' A B 6 6.991 -36.285 13.264 1.00 26.92 C
ATOM 10 O3' A B 6 7.816 -36.862 14.267 1.00 27.29 O
ATOM 11 C2' A B 6 7.709 -35.189 12.499 1.00 23.59 C
ATOM 12 O2' A B 6 9.026 -35.592 12.199 1.00 24.07 O
ATOM 13 C1' A B 6 6.908 -35.173 11.199 1.00 25.78 C
ATOM 14 N9 A B 6 5.675 -34.416 11.302 1.00 25.57 N
ATOM 15 C8 A B 6 4.461 -34.948 11.622 1.00 29.47 C
ATOM 16 N7 A B 6 3.497 -34.065 11.655 1.00 29.03 N
ATOM 17 C5 A B 6 4.116 -32.872 11.347 1.00 27.28 C
ATOM 18 C6 A B 6 3.601 -31.568 11.229 1.00 32.27 C
ATOM 19 N6 A B 6 2.299 -31.286 11.427 1.00 33.37 N
ATOM 20 N1 A B 6 4.470 -30.587 10.901 1.00 30.45 N
ATOM 21 C2 A B 6 5.762 -30.911 10.712 1.00 30.00 C
ATOM 22 N3 A B 6 6.354 -32.108 10.795 1.00 29.09 N
ATOM 23 C4 A B 6 5.465 -33.059 11.125 1.00 27.67 C
ATOM 24 P G B 7 7.996 -36.144 15.669 1.00 27.49 P
ATOM 25 OP1 G B 7 8.578 -37.160 16.569 1.00 31.54 O
ATOM 26 OP2 G B 7 6.758 -35.429 16.035 1.00 24.97 O
ATOM 27 O5' G B 7 9.099 -35.021 15.364 1.00 27.22 O
TER
ATOM 2 P C A 5 -1.558 -37.509 10.770 1.00 39.28 P
ATOM 3 OP1 C A 5 -1.919 -38.431 11.871 1.00 35.65 O
ATOM 4 OP2 C A 5 -1.736 -36.042 10.920 1.00 34.66 O
ATOM 5 O5' C A 5 -0.041 -37.716 10.332 1.00 36.79 O
ATOM 6 C5' C A 5 0.399 -38.969 9.867 1.00 36.38 C
ATOM 7 C4' C A 5 1.804 -38.779 9.360 1.00 35.62 C
ATOM 8 O4' C A 5 1.838 -37.814 8.279 1.00 33.86 O
ATOM 9 C3' C A 5 2.690 -38.142 10.402 1.00 32.68 C
ATOM 10 O3' C A 5 3.036 -39.124 11.361 1.00 30.38 O
ATOM 11 C2' C A 5 3.850 -37.739 9.509 1.00 31.61 C
ATOM 12 O2' C A 5 4.600 -38.865 9.104 1.00 32.01 O
ATOM 13 C1' C A 5 3.104 -37.172 8.304 1.00 30.78 C
ATOM 14 N1 C A 5 2.950 -35.670 8.301 1.00 29.78 N
ATOM 15 C2 C A 5 4.084 -34.888 8.018 1.00 29.58 C
ATOM 16 O2 C A 5 5.169 -35.454 7.797 1.00 27.27 O
ATOM 17 N3 C A 5 3.969 -33.537 8.005 1.00 25.91 N
ATOM 18 C4 C A 5 2.783 -32.972 8.255 1.00 28.21 C
ATOM 19 N4 C A 5 2.727 -31.637 8.225 1.00 25.95 N
ATOM 20 C5 C A 5 1.613 -33.745 8.545 1.00 27.49 C
ATOM 21 C6 C A 5 1.744 -35.078 8.558 1.00 28.41 C
ATOM 22 P A A 6 3.314 -38.698 12.877 1.00 34.88 P
ATOM 23 OP1 A A 6 3.669 -39.942 13.595 1.00 33.08 O
ATOM 24 OP2 A A 6 2.228 -37.820 13.368 1.00 33.45 O
ATOM 25 O5' A A 6 4.608 -37.771 12.739 1.00 26.63 O
TER
ATOM 1 O3' C B 5 3.036 -39.124 11.361 1.00 30.38 O
ATOM 2 P A B 6 3.314 -38.698 12.877 1.00 34.88 P
ATOM 3 OP1 A B 6 3.669 -39.942 13.595 1.00 33.08 O
ATOM 4 OP2 A B 6 2.228 -37.820 13.368 1.00 33.45 O
ATOM 5 O5' A B 6 4.608 -37.771 12.739 1.00 26.63 O
ATOM 6 C5' A B 6 5.831 -38.373 12.384 1.00 30.49 C
ATOM 7 C4' A B 6 6.870 -37.296 12.145 1.00 27.88 C
ATOM 8 O4' A B 6 6.521 -36.512 10.978 1.00 26.78 O
ATOM 9 C3' A B 6 6.991 -36.285 13.264 1.00 26.92 C
ATOM 10 O3' A B 6 7.816 -36.862 14.267 1.00 27.29 O
ATOM 11 C2' A B 6 7.709 -35.189 12.499 1.00 23.59 C
ATOM 12 O2' A B 6 9.026 -35.592 12.199 1.00 24.07 O
ATOM 13 C1' A B 6 6.908 -35.173 11.199 1.00 25.78 C
ATOM 14 N9 A B 6 5.675 -34.416 11.302 1.00 25.57 N
ATOM 15 C8 A B 6 4.461 -34.948 11.622 1.00 29.47 C
ATOM 16 N7 A B 6 3.497 -34.065 11.655 1.00 29.03 N
ATOM 17 C5 A B 6 4.116 -32.872 11.347 1.00 27.28 C
ATOM 18 C6 A B 6 3.601 -31.568 11.229 1.00 32.27 C
ATOM 19 N6 A B 6 2.299 -31.286 11.427 1.00 33.37 N
ATOM 20 N1 A B 6 4.470 -30.587 10.901 1.00 30.45 N
ATOM 21 C2 A B 6 5.762 -30.911 10.712 1.00 30.00 C
ATOM 22 N3 A B 6 6.354 -32.108 10.795 1.00 29.09 N
ATOM 23 C4 A B 6 5.465 -33.059 11.125 1.00 27.67 C
ATOM 24 P G B 7 7.996 -36.144 15.669 1.00 27.49 P
ATOM 25 OP1 G B 7 8.578 -37.160 16.569 1.00 31.54 O
ATOM 26 OP2 G B 7 6.758 -35.429 16.035 1.00 24.97 O
ATOM 27 O5' G B 7 9.099 -35.021 15.364 1.00 27.22 O
TER
Atoms:
C2: (4.084,-34.888,8.018)
OP1: (-1.919,-38.431,11.871)
OP2: (-1.736,-36.042,10.920)
C4: (2.783,-32.972,8.255)
O5': (-0.041,-37.716,10.332)
C3': (2.690,-38.142,10.402)
C1': (3.104,-37.172,8.304)
O4': (1.838,-37.814,8.279)
C5': (0.399,-38.969,9.867)
P: (-1.558,-37.509,10.770)
O2: (5.169,-35.454,7.797)
C4': (1.804,-38.779,9.360)
C2': (3.850,-37.739,9.509)
O2': (4.600,-38.865,9.104)
N1: (2.950,-35.670,8.301)
N3: (3.969,-33.537,8.005)
N4: (2.727,-31.637,8.225)
C6: (1.744,-35.078,8.558)
C5: (1.613,-33.745,8.545)
O3': (3.036,-39.124,11.361)
OP1: (-1.919,-38.431,11.871)
OP2: (-1.736,-36.042,10.920)
C4: (2.783,-32.972,8.255)
O5': (-0.041,-37.716,10.332)
C3': (2.690,-38.142,10.402)
C1': (3.104,-37.172,8.304)
O4': (1.838,-37.814,8.279)
C5': (0.399,-38.969,9.867)
P: (-1.558,-37.509,10.770)
O2: (5.169,-35.454,7.797)
C4': (1.804,-38.779,9.360)
C2': (3.850,-37.739,9.509)
O2': (4.600,-38.865,9.104)
N1: (2.950,-35.670,8.301)
N3: (3.969,-33.537,8.005)
N4: (2.727,-31.637,8.225)
C6: (1.744,-35.078,8.558)
C5: (1.613,-33.745,8.545)
O3': (3.036,-39.124,11.361)
OP1: (3.669,-39.942,13.595)
OP2: (2.228,-37.820,13.368)
C3': (6.991,-36.285,13.264)
C1': (6.908,-35.173,11.199)
C5': (5.831,-38.373,12.384)
O4': (6.521,-36.512,10.978)
C8: (4.461,-34.948,11.622)
O2': (9.026,-35.592,12.199)
C6: (3.601,-31.568,11.229)
C5: (4.116,-32.872,11.347)
C4: (5.465,-33.059,11.125)
P: (3.314,-38.698,12.877)
C4': (6.870,-37.296,12.145)
C2': (7.709,-35.189,12.499)
C2: (5.762,-30.911,10.712)
N1: (4.470,-30.587,10.901)
N3: (6.354,-32.108,10.795)
N6: (2.299,-31.286,11.427)
N7: (3.497,-34.065,11.655)
N9: (5.675,-34.416,11.302)
O5': (4.608,-37.771,12.739)
O3': (7.816,-36.862,14.267)
OP2: (2.228,-37.820,13.368)
C3': (6.991,-36.285,13.264)
C1': (6.908,-35.173,11.199)
C5': (5.831,-38.373,12.384)
O4': (6.521,-36.512,10.978)
C8: (4.461,-34.948,11.622)
O2': (9.026,-35.592,12.199)
C6: (3.601,-31.568,11.229)
C5: (4.116,-32.872,11.347)
C4: (5.465,-33.059,11.125)
P: (3.314,-38.698,12.877)
C4': (6.870,-37.296,12.145)
C2': (7.709,-35.189,12.499)
C2: (5.762,-30.911,10.712)
N1: (4.470,-30.587,10.901)
N3: (6.354,-32.108,10.795)
N6: (2.299,-31.286,11.427)
N7: (3.497,-34.065,11.655)
N9: (5.675,-34.416,11.302)
O5': (4.608,-37.771,12.739)
O3': (7.816,-36.862,14.267)
Image (generated by PyMOL):