Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01488:01487
Extra
PDB:
ATOM 1 O3' A A1487 122.001 165.691 43.253 1.00104.86 O
ATOM 2 P G A1488 121.099 165.093 44.443 1.00102.92 P
ATOM 3 OP1 G A1488 121.940 164.092 45.154 1.00103.71 O
ATOM 4 OP2 G A1488 119.785 164.679 43.881 1.00101.99 O
ATOM 5 O5' G A1488 120.872 166.339 45.414 1.00 99.42 O
ATOM 6 C5' G A1488 121.985 166.984 46.069 1.00 93.50 C
ATOM 7 C4' G A1488 121.561 168.322 46.624 1.00 90.34 C
ATOM 8 O4' G A1488 121.056 169.139 45.536 1.00 88.18 O
ATOM 9 C3' G A1488 120.404 168.296 47.610 1.00 89.34 C
ATOM 10 O3' G A1488 120.802 167.955 48.932 1.00 89.91 O
ATOM 11 C2' G A1488 119.867 169.715 47.505 1.00 87.89 C
ATOM 12 O2' G A1488 120.641 170.670 48.202 1.00 87.88 O
ATOM 13 C1' G A1488 119.993 169.957 46.004 1.00 86.70 C
ATOM 14 N9 G A1488 118.768 169.572 45.311 1.00 84.84 N
ATOM 15 C8 G A1488 118.523 168.409 44.618 1.00 84.53 C
ATOM 16 N7 G A1488 117.315 168.350 44.126 1.00 83.63 N
ATOM 17 C5 G A1488 116.729 169.546 44.515 1.00 82.80 C
ATOM 18 C6 G A1488 115.427 170.047 44.283 1.00 82.10 C
ATOM 19 O6 G A1488 114.495 169.515 43.669 1.00 80.74 O
ATOM 20 N1 G A1488 115.255 171.303 44.857 1.00 81.54 N
ATOM 21 C2 G A1488 116.213 171.987 45.562 1.00 81.08 C
ATOM 22 N2 G A1488 115.863 173.186 46.028 1.00 80.54 N
ATOM 23 N3 G A1488 117.426 171.528 45.791 1.00 81.40 N
ATOM 24 C4 G A1488 117.615 170.312 45.242 1.00 83.14 C
ATOM 25 P U A1489 119.728 167.303 49.945 1.00 90.38 P
ATOM 26 OP1 U A1489 120.479 166.899 51.160 1.00 90.83 O
ATOM 27 OP2 U A1489 118.918 166.287 49.213 1.00 90.17 O
ATOM 28 O5' U A1489 118.770 168.520 50.334 1.00 87.06 O
TER
ATOM 1 O3' A B1486 119.568 166.970 38.021 1.00113.84 O
ATOM 2 P A B1487 119.292 165.541 38.707 1.00114.40 P
ATOM 3 OP1 A B1487 119.954 164.506 37.864 1.00113.65 O
ATOM 4 OP2 A B1487 117.846 165.407 39.027 1.00114.43 O
ATOM 5 O5' A B1487 120.094 165.656 40.079 1.00112.30 O
ATOM 6 C5' A B1487 121.532 165.662 40.086 1.00109.93 C
ATOM 7 C4' A B1487 122.060 166.715 41.035 1.00107.47 C
ATOM 8 O4' A B1487 121.716 168.040 40.561 1.00106.59 O
ATOM 9 C3' A B1487 121.486 166.735 42.439 1.00106.12 C
ATOM 10 O3' A B1487 122.001 165.691 43.253 1.00104.86 O
ATOM 11 C2' A B1487 121.933 168.110 42.927 1.00105.82 C
ATOM 12 O2' A B1487 123.284 168.163 43.345 1.00105.23 O
ATOM 13 C1' A B1487 121.773 168.945 41.654 1.00105.54 C
ATOM 14 N9 A B1487 120.556 169.753 41.678 1.00104.52 N
ATOM 15 C8 A B1487 119.291 169.435 41.248 1.00104.14 C
ATOM 16 N7 A B1487 118.412 170.388 41.446 1.00103.92 N
ATOM 17 C5 A B1487 119.150 171.403 42.041 1.00104.14 C
ATOM 18 C6 A B1487 118.802 172.686 42.500 1.00104.30 C
ATOM 19 N6 A B1487 117.568 173.188 42.433 1.00104.06 N
ATOM 20 N1 A B1487 119.780 173.448 43.039 1.00104.40 N
ATOM 21 C2 A B1487 121.018 172.944 43.110 1.00104.29 C
ATOM 22 N3 A B1487 121.468 171.755 42.716 1.00104.09 N
ATOM 23 C4 A B1487 120.472 171.026 42.183 1.00104.21 C
ATOM 24 P G B1488 121.099 165.093 44.443 1.00102.92 P
ATOM 25 OP1 G B1488 121.940 164.092 45.154 1.00103.71 O
ATOM 26 OP2 G B1488 119.785 164.679 43.881 1.00101.99 O
ATOM 27 O5' G B1488 120.872 166.339 45.414 1.00 99.42 O
TER
ATOM 2 P G A1488 121.099 165.093 44.443 1.00102.92 P
ATOM 3 OP1 G A1488 121.940 164.092 45.154 1.00103.71 O
ATOM 4 OP2 G A1488 119.785 164.679 43.881 1.00101.99 O
ATOM 5 O5' G A1488 120.872 166.339 45.414 1.00 99.42 O
ATOM 6 C5' G A1488 121.985 166.984 46.069 1.00 93.50 C
ATOM 7 C4' G A1488 121.561 168.322 46.624 1.00 90.34 C
ATOM 8 O4' G A1488 121.056 169.139 45.536 1.00 88.18 O
ATOM 9 C3' G A1488 120.404 168.296 47.610 1.00 89.34 C
ATOM 10 O3' G A1488 120.802 167.955 48.932 1.00 89.91 O
ATOM 11 C2' G A1488 119.867 169.715 47.505 1.00 87.89 C
ATOM 12 O2' G A1488 120.641 170.670 48.202 1.00 87.88 O
ATOM 13 C1' G A1488 119.993 169.957 46.004 1.00 86.70 C
ATOM 14 N9 G A1488 118.768 169.572 45.311 1.00 84.84 N
ATOM 15 C8 G A1488 118.523 168.409 44.618 1.00 84.53 C
ATOM 16 N7 G A1488 117.315 168.350 44.126 1.00 83.63 N
ATOM 17 C5 G A1488 116.729 169.546 44.515 1.00 82.80 C
ATOM 18 C6 G A1488 115.427 170.047 44.283 1.00 82.10 C
ATOM 19 O6 G A1488 114.495 169.515 43.669 1.00 80.74 O
ATOM 20 N1 G A1488 115.255 171.303 44.857 1.00 81.54 N
ATOM 21 C2 G A1488 116.213 171.987 45.562 1.00 81.08 C
ATOM 22 N2 G A1488 115.863 173.186 46.028 1.00 80.54 N
ATOM 23 N3 G A1488 117.426 171.528 45.791 1.00 81.40 N
ATOM 24 C4 G A1488 117.615 170.312 45.242 1.00 83.14 C
ATOM 25 P U A1489 119.728 167.303 49.945 1.00 90.38 P
ATOM 26 OP1 U A1489 120.479 166.899 51.160 1.00 90.83 O
ATOM 27 OP2 U A1489 118.918 166.287 49.213 1.00 90.17 O
ATOM 28 O5' U A1489 118.770 168.520 50.334 1.00 87.06 O
TER
ATOM 1 O3' A B1486 119.568 166.970 38.021 1.00113.84 O
ATOM 2 P A B1487 119.292 165.541 38.707 1.00114.40 P
ATOM 3 OP1 A B1487 119.954 164.506 37.864 1.00113.65 O
ATOM 4 OP2 A B1487 117.846 165.407 39.027 1.00114.43 O
ATOM 5 O5' A B1487 120.094 165.656 40.079 1.00112.30 O
ATOM 6 C5' A B1487 121.532 165.662 40.086 1.00109.93 C
ATOM 7 C4' A B1487 122.060 166.715 41.035 1.00107.47 C
ATOM 8 O4' A B1487 121.716 168.040 40.561 1.00106.59 O
ATOM 9 C3' A B1487 121.486 166.735 42.439 1.00106.12 C
ATOM 10 O3' A B1487 122.001 165.691 43.253 1.00104.86 O
ATOM 11 C2' A B1487 121.933 168.110 42.927 1.00105.82 C
ATOM 12 O2' A B1487 123.284 168.163 43.345 1.00105.23 O
ATOM 13 C1' A B1487 121.773 168.945 41.654 1.00105.54 C
ATOM 14 N9 A B1487 120.556 169.753 41.678 1.00104.52 N
ATOM 15 C8 A B1487 119.291 169.435 41.248 1.00104.14 C
ATOM 16 N7 A B1487 118.412 170.388 41.446 1.00103.92 N
ATOM 17 C5 A B1487 119.150 171.403 42.041 1.00104.14 C
ATOM 18 C6 A B1487 118.802 172.686 42.500 1.00104.30 C
ATOM 19 N6 A B1487 117.568 173.188 42.433 1.00104.06 N
ATOM 20 N1 A B1487 119.780 173.448 43.039 1.00104.40 N
ATOM 21 C2 A B1487 121.018 172.944 43.110 1.00104.29 C
ATOM 22 N3 A B1487 121.468 171.755 42.716 1.00104.09 N
ATOM 23 C4 A B1487 120.472 171.026 42.183 1.00104.21 C
ATOM 24 P G B1488 121.099 165.093 44.443 1.00102.92 P
ATOM 25 OP1 G B1488 121.940 164.092 45.154 1.00103.71 O
ATOM 26 OP2 G B1488 119.785 164.679 43.881 1.00101.99 O
ATOM 27 O5' G B1488 120.872 166.339 45.414 1.00 99.42 O
TER
Atoms:
OP1: (121.940,164.092,45.154)
OP2: (119.785,164.679,43.881)
C3': (120.404,168.296,47.610)
C1': (119.993,169.957,46.004)
C5': (121.985,166.984,46.069)
O6: (114.495,169.515,43.669)
O4': (121.056,169.139,45.536)
C8: (118.523,168.409,44.618)
C2: (116.213,171.987,45.562)
C6: (115.427,170.047,44.283)
C5: (116.729,169.546,44.515)
C4: (117.615,170.312,45.242)
P: (121.099,165.093,44.443)
C4': (121.561,168.322,46.624)
C2': (119.867,169.715,47.505)
O2': (120.641,170.670,48.202)
N1: (115.255,171.303,44.857)
N2: (115.863,173.186,46.028)
N3: (117.426,171.528,45.791)
N7: (117.315,168.350,44.126)
N9: (118.768,169.572,45.311)
O5': (120.872,166.339,45.414)
O3': (120.802,167.955,48.932)
OP2: (119.785,164.679,43.881)
C3': (120.404,168.296,47.610)
C1': (119.993,169.957,46.004)
C5': (121.985,166.984,46.069)
O6: (114.495,169.515,43.669)
O4': (121.056,169.139,45.536)
C8: (118.523,168.409,44.618)
C2: (116.213,171.987,45.562)
C6: (115.427,170.047,44.283)
C5: (116.729,169.546,44.515)
C4: (117.615,170.312,45.242)
P: (121.099,165.093,44.443)
C4': (121.561,168.322,46.624)
C2': (119.867,169.715,47.505)
O2': (120.641,170.670,48.202)
N1: (115.255,171.303,44.857)
N2: (115.863,173.186,46.028)
N3: (117.426,171.528,45.791)
N7: (117.315,168.350,44.126)
N9: (118.768,169.572,45.311)
O5': (120.872,166.339,45.414)
O3': (120.802,167.955,48.932)
OP1: (119.954,164.506,37.864)
OP2: (117.846,165.407,39.027)
C3': (121.486,166.735,42.439)
C1': (121.773,168.945,41.654)
C5': (121.532,165.662,40.086)
O4': (121.716,168.040,40.561)
C8: (119.291,169.435,41.248)
O2': (123.284,168.163,43.345)
C6: (118.802,172.686,42.500)
C5: (119.150,171.403,42.041)
C4: (120.472,171.026,42.183)
P: (119.292,165.541,38.707)
C4': (122.060,166.715,41.035)
C2': (121.933,168.110,42.927)
C2: (121.018,172.944,43.110)
N1: (119.780,173.448,43.039)
N3: (121.468,171.755,42.716)
N6: (117.568,173.188,42.433)
N7: (118.412,170.388,41.446)
N9: (120.556,169.753,41.678)
O5': (120.094,165.656,40.079)
O3': (122.001,165.691,43.253)
OP2: (117.846,165.407,39.027)
C3': (121.486,166.735,42.439)
C1': (121.773,168.945,41.654)
C5': (121.532,165.662,40.086)
O4': (121.716,168.040,40.561)
C8: (119.291,169.435,41.248)
O2': (123.284,168.163,43.345)
C6: (118.802,172.686,42.500)
C5: (119.150,171.403,42.041)
C4: (120.472,171.026,42.183)
P: (119.292,165.541,38.707)
C4': (122.060,166.715,41.035)
C2': (121.933,168.110,42.927)
C2: (121.018,172.944,43.110)
N1: (119.780,173.448,43.039)
N3: (121.468,171.755,42.716)
N6: (117.568,173.188,42.433)
N7: (118.412,170.388,41.446)
N9: (120.556,169.753,41.678)
O5': (120.094,165.656,40.079)
O3': (122.001,165.691,43.253)
Image (generated by PyMOL):