Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01236:01237
Extra
PDB:
ATOM 1 O3' U A1235 4.663 86.508 59.039 1.00 56.10 O
ATOM 2 P C A1236 5.526 85.699 57.956 1.00 57.29 P
ATOM 3 OP1 C A1236 4.753 85.616 56.689 1.00 57.79 O
ATOM 4 OP2 C A1236 5.988 84.453 58.609 1.00 57.65 O
ATOM 5 O5' C A1236 6.789 86.635 57.714 1.00 56.78 O
ATOM 6 C5' C A1236 7.907 86.185 56.926 1.00 57.03 C
ATOM 7 C4' C A1236 8.908 87.304 56.760 1.00 57.13 C
ATOM 8 O4' C A1236 8.340 88.362 55.947 1.00 55.92 O
ATOM 9 C3' C A1236 9.305 88.004 58.047 1.00 56.27 C
ATOM 10 O3' C A1236 10.319 87.275 58.718 1.00 56.40 O
ATOM 11 C2' C A1236 9.795 89.356 57.551 1.00 55.77 C
ATOM 12 O2' C A1236 11.107 89.284 57.033 1.00 56.02 O
ATOM 13 C1' C A1236 8.832 89.614 56.390 1.00 55.67 C
ATOM 14 N1 C A1236 7.690 90.488 56.701 1.00 55.89 N
ATOM 15 C2 C A1236 7.880 91.878 56.694 1.00 57.19 C
ATOM 16 O2 C A1236 9.014 92.333 56.468 1.00 58.73 O
ATOM 17 N3 C A1236 6.825 92.688 56.930 1.00 56.93 N
ATOM 18 C4 C A1236 5.620 92.165 57.163 1.00 55.71 C
ATOM 19 N4 C A1236 4.602 93.005 57.352 1.00 56.70 N
ATOM 20 C5 C A1236 5.404 90.758 57.203 1.00 54.38 C
ATOM 21 C6 C A1236 6.456 89.965 56.972 1.00 55.13 C
ATOM 22 P A A1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 23 OP1 A A1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 24 OP2 A A1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 25 O5' A A1237 10.568 88.774 60.718 1.00 61.01 O
TER
ATOM 1 O3' C B1236 10.319 87.275 58.718 1.00 56.40 O
ATOM 2 P A B1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 3 OP1 A B1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 4 OP2 A B1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 5 O5' A B1237 10.568 88.774 60.718 1.00 61.01 O
ATOM 6 C5' A B1237 11.849 89.409 60.548 1.00 64.15 C
ATOM 7 C4' A B1237 11.763 90.850 60.970 1.00 66.88 C
ATOM 8 O4' A B1237 10.853 91.547 60.085 1.00 66.81 O
ATOM 9 C3' A B1237 11.171 91.061 62.351 1.00 70.07 C
ATOM 10 O3' A B1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 11 C2' A B1237 10.625 92.478 62.265 1.00 68.64 C
ATOM 12 O2' A B1237 11.611 93.473 62.441 1.00 68.29 O
ATOM 13 C1' A B1237 10.115 92.507 60.823 1.00 67.94 C
ATOM 14 N9 A B1237 8.698 92.171 60.714 1.00 67.63 N
ATOM 15 C8 A B1237 8.115 90.931 60.763 1.00 67.60 C
ATOM 16 N7 A B1237 6.811 90.956 60.657 1.00 67.98 N
ATOM 17 C5 A B1237 6.514 92.304 60.525 1.00 68.49 C
ATOM 18 C6 A B1237 5.297 92.996 60.383 1.00 69.46 C
ATOM 19 N6 A B1237 4.103 92.398 60.353 1.00 69.33 N
ATOM 20 N1 A B1237 5.350 94.340 60.275 1.00 69.77 N
ATOM 21 C2 A B1237 6.549 94.938 60.312 1.00 69.82 C
ATOM 22 N3 A B1237 7.758 94.398 60.447 1.00 68.19 N
ATOM 23 C4 A B1237 7.668 93.063 60.550 1.00 68.05 C
ATOM 24 P U B1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 25 OP1 U B1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 26 OP2 U B1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 27 O5' U B1238 12.927 90.764 65.732 1.00 89.08 O
TER
ATOM 2 P C A1236 5.526 85.699 57.956 1.00 57.29 P
ATOM 3 OP1 C A1236 4.753 85.616 56.689 1.00 57.79 O
ATOM 4 OP2 C A1236 5.988 84.453 58.609 1.00 57.65 O
ATOM 5 O5' C A1236 6.789 86.635 57.714 1.00 56.78 O
ATOM 6 C5' C A1236 7.907 86.185 56.926 1.00 57.03 C
ATOM 7 C4' C A1236 8.908 87.304 56.760 1.00 57.13 C
ATOM 8 O4' C A1236 8.340 88.362 55.947 1.00 55.92 O
ATOM 9 C3' C A1236 9.305 88.004 58.047 1.00 56.27 C
ATOM 10 O3' C A1236 10.319 87.275 58.718 1.00 56.40 O
ATOM 11 C2' C A1236 9.795 89.356 57.551 1.00 55.77 C
ATOM 12 O2' C A1236 11.107 89.284 57.033 1.00 56.02 O
ATOM 13 C1' C A1236 8.832 89.614 56.390 1.00 55.67 C
ATOM 14 N1 C A1236 7.690 90.488 56.701 1.00 55.89 N
ATOM 15 C2 C A1236 7.880 91.878 56.694 1.00 57.19 C
ATOM 16 O2 C A1236 9.014 92.333 56.468 1.00 58.73 O
ATOM 17 N3 C A1236 6.825 92.688 56.930 1.00 56.93 N
ATOM 18 C4 C A1236 5.620 92.165 57.163 1.00 55.71 C
ATOM 19 N4 C A1236 4.602 93.005 57.352 1.00 56.70 N
ATOM 20 C5 C A1236 5.404 90.758 57.203 1.00 54.38 C
ATOM 21 C6 C A1236 6.456 89.965 56.972 1.00 55.13 C
ATOM 22 P A A1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 23 OP1 A A1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 24 OP2 A A1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 25 O5' A A1237 10.568 88.774 60.718 1.00 61.01 O
TER
ATOM 1 O3' C B1236 10.319 87.275 58.718 1.00 56.40 O
ATOM 2 P A B1237 10.345 87.251 60.317 1.00 57.10 P
ATOM 3 OP1 A B1237 11.540 86.475 60.719 1.00 56.53 O
ATOM 4 OP2 A B1237 9.005 86.851 60.810 1.00 58.29 O
ATOM 5 O5' A B1237 10.568 88.774 60.718 1.00 61.01 O
ATOM 6 C5' A B1237 11.849 89.409 60.548 1.00 64.15 C
ATOM 7 C4' A B1237 11.763 90.850 60.970 1.00 66.88 C
ATOM 8 O4' A B1237 10.853 91.547 60.085 1.00 66.81 O
ATOM 9 C3' A B1237 11.171 91.061 62.351 1.00 70.07 C
ATOM 10 O3' A B1237 12.156 90.911 63.356 1.00 77.27 O
ATOM 11 C2' A B1237 10.625 92.478 62.265 1.00 68.64 C
ATOM 12 O2' A B1237 11.611 93.473 62.441 1.00 68.29 O
ATOM 13 C1' A B1237 10.115 92.507 60.823 1.00 67.94 C
ATOM 14 N9 A B1237 8.698 92.171 60.714 1.00 67.63 N
ATOM 15 C8 A B1237 8.115 90.931 60.763 1.00 67.60 C
ATOM 16 N7 A B1237 6.811 90.956 60.657 1.00 67.98 N
ATOM 17 C5 A B1237 6.514 92.304 60.525 1.00 68.49 C
ATOM 18 C6 A B1237 5.297 92.996 60.383 1.00 69.46 C
ATOM 19 N6 A B1237 4.103 92.398 60.353 1.00 69.33 N
ATOM 20 N1 A B1237 5.350 94.340 60.275 1.00 69.77 N
ATOM 21 C2 A B1237 6.549 94.938 60.312 1.00 69.82 C
ATOM 22 N3 A B1237 7.758 94.398 60.447 1.00 68.19 N
ATOM 23 C4 A B1237 7.668 93.063 60.550 1.00 68.05 C
ATOM 24 P U B1238 11.771 90.236 64.763 1.00 83.50 P
ATOM 25 OP1 U B1238 11.933 88.761 64.615 1.00 81.74 O
ATOM 26 OP2 U B1238 10.462 90.791 65.214 1.00 82.28 O
ATOM 27 O5' U B1238 12.927 90.764 65.732 1.00 89.08 O
TER
Atoms:
C2: (7.880,91.878,56.694)
OP1: (4.753,85.616,56.689)
OP2: (5.988,84.453,58.609)
C4: (5.620,92.165,57.163)
O5': (6.789,86.635,57.714)
C3': (9.305,88.004,58.047)
C1': (8.832,89.614,56.390)
O4': (8.340,88.362,55.947)
C5': (7.907,86.185,56.926)
P: (5.526,85.699,57.956)
O2: (9.014,92.333,56.468)
C4': (8.908,87.304,56.760)
C2': (9.795,89.356,57.551)
O2': (11.107,89.284,57.033)
N1: (7.690,90.488,56.701)
N3: (6.825,92.688,56.930)
N4: (4.602,93.005,57.352)
C6: (6.456,89.965,56.972)
C5: (5.404,90.758,57.203)
O3': (10.319,87.275,58.718)
OP1: (4.753,85.616,56.689)
OP2: (5.988,84.453,58.609)
C4: (5.620,92.165,57.163)
O5': (6.789,86.635,57.714)
C3': (9.305,88.004,58.047)
C1': (8.832,89.614,56.390)
O4': (8.340,88.362,55.947)
C5': (7.907,86.185,56.926)
P: (5.526,85.699,57.956)
O2: (9.014,92.333,56.468)
C4': (8.908,87.304,56.760)
C2': (9.795,89.356,57.551)
O2': (11.107,89.284,57.033)
N1: (7.690,90.488,56.701)
N3: (6.825,92.688,56.930)
N4: (4.602,93.005,57.352)
C6: (6.456,89.965,56.972)
C5: (5.404,90.758,57.203)
O3': (10.319,87.275,58.718)
OP1: (11.540,86.475,60.719)
OP2: (9.005,86.851,60.810)
C3': (11.171,91.061,62.351)
C1': (10.115,92.507,60.823)
C5': (11.849,89.409,60.548)
O4': (10.853,91.547,60.085)
C8: (8.115,90.931,60.763)
O2': (11.611,93.473,62.441)
C6: (5.297,92.996,60.383)
C5: (6.514,92.304,60.525)
C4: (7.668,93.063,60.550)
P: (10.345,87.251,60.317)
C4': (11.763,90.850,60.970)
C2': (10.625,92.478,62.265)
C2: (6.549,94.938,60.312)
N1: (5.350,94.340,60.275)
N3: (7.758,94.398,60.447)
N6: (4.103,92.398,60.353)
N7: (6.811,90.956,60.657)
N9: (8.698,92.171,60.714)
O5': (10.568,88.774,60.718)
O3': (12.156,90.911,63.356)
OP2: (9.005,86.851,60.810)
C3': (11.171,91.061,62.351)
C1': (10.115,92.507,60.823)
C5': (11.849,89.409,60.548)
O4': (10.853,91.547,60.085)
C8: (8.115,90.931,60.763)
O2': (11.611,93.473,62.441)
C6: (5.297,92.996,60.383)
C5: (6.514,92.304,60.525)
C4: (7.668,93.063,60.550)
P: (10.345,87.251,60.317)
C4': (11.763,90.850,60.970)
C2': (10.625,92.478,62.265)
C2: (6.549,94.938,60.312)
N1: (5.350,94.340,60.275)
N3: (7.758,94.398,60.447)
N6: (4.103,92.398,60.353)
N7: (6.811,90.956,60.657)
N9: (8.698,92.171,60.714)
O5': (10.568,88.774,60.718)
O3': (12.156,90.911,63.356)
Image (generated by PyMOL):