ClaRNA

Doublet info:

Details

Nucleotide types: UG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:02022:02021

Extra

PDB:
ATOM 1 O3' G A2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 2 P U A2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 3 OP1 U A2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 4 OP2 U A2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 5 O5' U A2022 39.022 123.134 105.724 1.00 35.85 O
ATOM 6 C5' U A2022 37.785 123.754 106.069 1.00 36.98 C
ATOM 7 C4' U A2022 36.783 123.561 104.961 1.00 39.31 C
ATOM 8 O4' U A2022 37.141 124.385 103.817 1.00 40.55 O
ATOM 9 C3' U A2022 36.656 122.138 104.436 1.00 40.52 C
ATOM 10 O3' U A2022 35.308 121.880 104.104 1.00 39.00 O
ATOM 11 C2' U A2022 37.507 122.167 103.173 1.00 42.52 C
ATOM 12 O2' U A2022 37.144 121.207 102.194 1.00 46.84 O
ATOM 13 C1' U A2022 37.234 123.577 102.665 1.00 40.94 C
ATOM 14 N1 U A2022 38.330 124.068 101.823 1.00 40.61 N
ATOM 15 C2 U A2022 38.042 124.381 100.511 1.00 39.24 C
ATOM 16 O2 U A2022 36.922 124.326 100.051 1.00 37.09 O
ATOM 17 N3 U A2022 39.123 124.762 99.759 1.00 39.76 N
ATOM 18 C4 U A2022 40.431 124.866 100.182 1.00 41.33 C
ATOM 19 O4 U A2022 41.313 125.121 99.365 1.00 42.87 O
ATOM 20 C5 U A2022 40.637 124.562 101.561 1.00 42.20 C
ATOM 21 C6 U A2022 39.607 124.185 102.316 1.00 41.61 C
ATOM 22 P C A2023 34.437 120.948 105.062 1.00 39.58 P
ATOM 23 OP1 C A2023 33.078 120.875 104.486 1.00 38.81 O
ATOM 24 OP2 C A2023 34.629 121.455 106.446 1.00 39.86 O
ATOM 25 O5' C A2023 35.136 119.525 104.962 1.00 38.31 O
TER

ATOM 1 O3' A B2020 44.354 123.200 105.797 1.00 41.05 O
ATOM 2 P G B2021 44.939 124.618 105.312 1.00 43.31 P
ATOM 3 OP1 G B2021 45.052 124.543 103.823 1.00 40.45 O
ATOM 4 OP2 G B2021 46.124 124.989 106.129 1.00 41.35 O
ATOM 5 O5' G B2021 43.782 125.640 105.690 1.00 41.04 O
ATOM 6 C5' G B2021 43.397 125.837 107.062 1.00 39.76 C
ATOM 7 C4' G B2021 41.994 126.384 107.126 1.00 38.34 C
ATOM 8 O4' G B2021 41.968 127.662 106.450 1.00 38.01 O
ATOM 9 C3' G B2021 40.946 125.546 106.418 1.00 36.48 C
ATOM 10 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 11 C2' G B2021 39.910 126.581 106.033 1.00 35.46 C
ATOM 12 O2' G B2021 39.128 126.929 107.147 1.00 33.11 O
ATOM 13 C1' G B2021 40.802 127.763 105.659 1.00 37.38 C
ATOM 14 N9 G B2021 41.230 127.802 104.262 1.00 39.31 N
ATOM 15 C8 G B2021 42.525 127.837 103.809 1.00 38.95 C
ATOM 16 N7 G B2021 42.614 127.898 102.512 1.00 40.38 N
ATOM 17 C5 G B2021 41.299 127.897 102.077 1.00 40.18 C
ATOM 18 C6 G B2021 40.774 127.949 100.768 1.00 41.44 C
ATOM 19 O6 G B2021 41.390 128.007 99.690 1.00 41.07 O
ATOM 20 N1 G B2021 39.384 127.920 100.778 1.00 42.13 N
ATOM 21 C2 G B2021 38.604 127.843 101.906 1.00 41.29 C
ATOM 22 N2 G B2021 37.285 127.797 101.712 1.00 42.29 N
ATOM 23 N3 G B2021 39.083 127.803 103.130 1.00 40.23 N
ATOM 24 C4 G B2021 40.430 127.831 103.143 1.00 39.72 C
ATOM 25 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 26 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 27 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 28 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
TER

Atoms:
C4: (40.431,124.866,100.182)
N3: (39.123,124.762,99.759)
OP1: (39.757,122.283,107.946)
OP2: (41.451,122.669,106.057)
C2: (38.042,124.381,100.511)
C1': (37.234,123.577,102.665)
C3': (36.656,122.138,104.436)
O5': (39.022,123.134,105.724)
O4': (37.141,124.385,103.817)
C5': (37.785,123.754,106.069)
P: (40.213,123.063,106.775)
C4': (36.783,123.561,104.961)
C2': (37.507,122.167,103.173)
O2': (37.144,121.207,102.194)
N1: (38.330,124.068,101.823)
O4: (41.313,125.121,99.365)
O2: (36.922,124.326,100.051)
C6: (39.607,124.185,102.316)
C5: (40.637,124.562,101.561)
O3': (35.308,121.880,104.104)
OP1: (45.052,124.543,103.823)
OP2: (46.124,124.989,106.129)
C3': (40.946,125.546,106.418)
C1': (40.802,127.763,105.659)
C5': (43.397,125.837,107.062)
O6: (41.390,128.007,99.690)
O4': (41.968,127.662,106.450)
C8: (42.525,127.837,103.809)
C2: (38.604,127.843,101.906)
C6: (40.774,127.949,100.768)
C5: (41.299,127.897,102.077)
C4: (40.430,127.831,103.143)
P: (44.939,124.618,105.312)
C4': (41.994,126.384,107.126)
C2': (39.910,126.581,106.033)
O2': (39.128,126.929,107.147)
N1: (39.384,127.920,100.778)
N2: (37.285,127.797,101.712)
N3: (39.083,127.803,103.130)
N7: (42.614,127.898,102.512)
N9: (41.230,127.802,104.262)
O5': (43.782,125.640,105.690)
O3': (40.399,124.570,107.288)
Image (generated by PyMOL):
PyMOL image
show in jmol