Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:B10:B9
Extra
PDB:
ATOM 1 O3' A A 9 2.960 14.441 48.593 1.00 27.26 O
ATOM 2 P G A 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 3 OP1 G A 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 4 OP2 G A 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 5 O5' G A 10 1.272 14.984 46.870 1.00 28.30 O
ATOM 6 C5' G A 10 0.652 15.977 46.100 1.00 27.65 C
ATOM 7 C4' G A 10 -0.802 16.017 46.455 1.00 30.05 C
ATOM 8 O4' G A 10 -0.940 16.465 47.827 1.00 30.39 O
ATOM 9 C3' G A 10 -1.624 17.001 45.658 1.00 30.62 C
ATOM 10 O3' G A 10 -2.020 16.410 44.444 1.00 30.11 O
ATOM 11 C2' G A 10 -2.793 17.254 46.583 1.00 29.58 C
ATOM 12 O2' G A 10 -3.692 16.169 46.550 1.00 30.28 O
ATOM 13 C1' G A 10 -2.076 17.307 47.933 1.00 30.91 C
ATOM 14 N9 G A 10 -1.602 18.647 48.248 1.00 30.67 N
ATOM 15 C8 G A 10 -0.298 19.079 48.274 1.00 31.34 C
ATOM 16 N7 G A 10 -0.182 20.342 48.579 1.00 29.35 N
ATOM 17 C5 G A 10 -1.489 20.769 48.768 1.00 31.57 C
ATOM 18 C6 G A 10 -1.998 22.048 49.113 1.00 30.61 C
ATOM 19 O6 G A 10 -1.375 23.095 49.326 1.00 33.51 O
ATOM 20 N1 G A 10 -3.383 22.036 49.200 1.00 29.96 N
ATOM 21 C2 G A 10 -4.181 20.940 48.991 1.00 28.68 C
ATOM 22 N2 G A 10 -5.499 21.132 49.149 1.00 25.33 N
ATOM 23 N3 G A 10 -3.720 19.743 48.662 1.00 28.10 N
ATOM 24 C4 G A 10 -2.377 19.730 48.571 1.00 30.56 C
ATOM 25 P U A 11 -1.915 17.267 43.108 1.00 31.84 P
ATOM 26 OP1 U A 11 -1.878 16.344 41.944 1.00 33.64 O
ATOM 27 OP2 U A 11 -0.818 18.246 43.322 1.00 32.44 O
ATOM 28 O5' U A 11 -3.287 18.065 43.088 1.00 32.19 O
TER
ATOM 1 O3' A B 8 6.654 17.669 51.908 1.00 26.16 O
ATOM 2 P A B 9 6.185 17.769 50.376 1.00 27.78 P
ATOM 3 OP1 A B 9 7.216 17.095 49.536 1.00 28.02 O
ATOM 4 OP2 A B 9 5.805 19.177 50.077 1.00 28.50 O
ATOM 5 O5' A B 9 4.864 16.883 50.338 1.00 26.14 O
ATOM 6 C5' A B 9 4.859 15.567 50.878 1.00 25.77 C
ATOM 7 C4' A B 9 3.456 15.014 50.894 1.00 27.23 C
ATOM 8 O4' A B 9 2.688 15.591 51.985 1.00 26.96 O
ATOM 9 C3' A B 9 2.642 15.326 49.653 1.00 27.64 C
ATOM 10 O3' A B 9 2.960 14.441 48.593 1.00 27.26 O
ATOM 11 C2' A B 9 1.215 15.187 50.163 1.00 27.55 C
ATOM 12 O2' A B 9 0.764 13.850 50.239 1.00 30.71 O
ATOM 13 C1' A B 9 1.344 15.768 51.574 1.00 27.06 C
ATOM 14 N9 A B 9 1.033 17.196 51.619 1.00 26.79 N
ATOM 15 C8 A B 9 1.892 18.251 51.469 1.00 26.92 C
ATOM 16 N7 A B 9 1.307 19.420 51.546 1.00 27.82 N
ATOM 17 C5 A B 9 -0.025 19.110 51.763 1.00 26.28 C
ATOM 18 C6 A B 9 -1.161 19.911 51.920 1.00 25.25 C
ATOM 19 N6 A B 9 -1.131 21.241 51.890 1.00 25.58 N
ATOM 20 N1 A B 9 -2.343 19.292 52.109 1.00 24.73 N
ATOM 21 C2 A B 9 -2.368 17.959 52.142 1.00 24.83 C
ATOM 22 N3 A B 9 -1.367 17.097 52.008 1.00 24.15 N
ATOM 23 C4 A B 9 -0.209 17.746 51.815 1.00 24.64 C
ATOM 24 P G B 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 25 OP1 G B 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 26 OP2 G B 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 27 O5' G B 10 1.272 14.984 46.870 1.00 28.30 O
TER
ATOM 2 P G A 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 3 OP1 G A 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 4 OP2 G A 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 5 O5' G A 10 1.272 14.984 46.870 1.00 28.30 O
ATOM 6 C5' G A 10 0.652 15.977 46.100 1.00 27.65 C
ATOM 7 C4' G A 10 -0.802 16.017 46.455 1.00 30.05 C
ATOM 8 O4' G A 10 -0.940 16.465 47.827 1.00 30.39 O
ATOM 9 C3' G A 10 -1.624 17.001 45.658 1.00 30.62 C
ATOM 10 O3' G A 10 -2.020 16.410 44.444 1.00 30.11 O
ATOM 11 C2' G A 10 -2.793 17.254 46.583 1.00 29.58 C
ATOM 12 O2' G A 10 -3.692 16.169 46.550 1.00 30.28 O
ATOM 13 C1' G A 10 -2.076 17.307 47.933 1.00 30.91 C
ATOM 14 N9 G A 10 -1.602 18.647 48.248 1.00 30.67 N
ATOM 15 C8 G A 10 -0.298 19.079 48.274 1.00 31.34 C
ATOM 16 N7 G A 10 -0.182 20.342 48.579 1.00 29.35 N
ATOM 17 C5 G A 10 -1.489 20.769 48.768 1.00 31.57 C
ATOM 18 C6 G A 10 -1.998 22.048 49.113 1.00 30.61 C
ATOM 19 O6 G A 10 -1.375 23.095 49.326 1.00 33.51 O
ATOM 20 N1 G A 10 -3.383 22.036 49.200 1.00 29.96 N
ATOM 21 C2 G A 10 -4.181 20.940 48.991 1.00 28.68 C
ATOM 22 N2 G A 10 -5.499 21.132 49.149 1.00 25.33 N
ATOM 23 N3 G A 10 -3.720 19.743 48.662 1.00 28.10 N
ATOM 24 C4 G A 10 -2.377 19.730 48.571 1.00 30.56 C
ATOM 25 P U A 11 -1.915 17.267 43.108 1.00 31.84 P
ATOM 26 OP1 U A 11 -1.878 16.344 41.944 1.00 33.64 O
ATOM 27 OP2 U A 11 -0.818 18.246 43.322 1.00 32.44 O
ATOM 28 O5' U A 11 -3.287 18.065 43.088 1.00 32.19 O
TER
ATOM 1 O3' A B 8 6.654 17.669 51.908 1.00 26.16 O
ATOM 2 P A B 9 6.185 17.769 50.376 1.00 27.78 P
ATOM 3 OP1 A B 9 7.216 17.095 49.536 1.00 28.02 O
ATOM 4 OP2 A B 9 5.805 19.177 50.077 1.00 28.50 O
ATOM 5 O5' A B 9 4.864 16.883 50.338 1.00 26.14 O
ATOM 6 C5' A B 9 4.859 15.567 50.878 1.00 25.77 C
ATOM 7 C4' A B 9 3.456 15.014 50.894 1.00 27.23 C
ATOM 8 O4' A B 9 2.688 15.591 51.985 1.00 26.96 O
ATOM 9 C3' A B 9 2.642 15.326 49.653 1.00 27.64 C
ATOM 10 O3' A B 9 2.960 14.441 48.593 1.00 27.26 O
ATOM 11 C2' A B 9 1.215 15.187 50.163 1.00 27.55 C
ATOM 12 O2' A B 9 0.764 13.850 50.239 1.00 30.71 O
ATOM 13 C1' A B 9 1.344 15.768 51.574 1.00 27.06 C
ATOM 14 N9 A B 9 1.033 17.196 51.619 1.00 26.79 N
ATOM 15 C8 A B 9 1.892 18.251 51.469 1.00 26.92 C
ATOM 16 N7 A B 9 1.307 19.420 51.546 1.00 27.82 N
ATOM 17 C5 A B 9 -0.025 19.110 51.763 1.00 26.28 C
ATOM 18 C6 A B 9 -1.161 19.911 51.920 1.00 25.25 C
ATOM 19 N6 A B 9 -1.131 21.241 51.890 1.00 25.58 N
ATOM 20 N1 A B 9 -2.343 19.292 52.109 1.00 24.73 N
ATOM 21 C2 A B 9 -2.368 17.959 52.142 1.00 24.83 C
ATOM 22 N3 A B 9 -1.367 17.097 52.008 1.00 24.15 N
ATOM 23 C4 A B 9 -0.209 17.746 51.815 1.00 24.64 C
ATOM 24 P G B 10 2.839 14.951 47.077 1.00 28.03 P
ATOM 25 OP1 G B 10 3.373 13.895 46.167 1.00 31.03 O
ATOM 26 OP2 G B 10 3.368 16.329 46.982 1.00 30.56 O
ATOM 27 O5' G B 10 1.272 14.984 46.870 1.00 28.30 O
TER
Atoms:
OP1: (3.373,13.895,46.167)
OP2: (3.368,16.329,46.982)
C3': (-1.624,17.001,45.658)
C1': (-2.076,17.307,47.933)
C5': (0.652,15.977,46.100)
O6: (-1.375,23.095,49.326)
O4': (-0.940,16.465,47.827)
C8: (-0.298,19.079,48.274)
C2: (-4.181,20.940,48.991)
C6: (-1.998,22.048,49.113)
C5: (-1.489,20.769,48.768)
C4: (-2.377,19.730,48.571)
P: (2.839,14.951,47.077)
C4': (-0.802,16.017,46.455)
C2': (-2.793,17.254,46.583)
O2': (-3.692,16.169,46.550)
N1: (-3.383,22.036,49.200)
N2: (-5.499,21.132,49.149)
N3: (-3.720,19.743,48.662)
N7: (-0.182,20.342,48.579)
N9: (-1.602,18.647,48.248)
O5': (1.272,14.984,46.870)
O3': (-2.020,16.410,44.444)
OP2: (3.368,16.329,46.982)
C3': (-1.624,17.001,45.658)
C1': (-2.076,17.307,47.933)
C5': (0.652,15.977,46.100)
O6: (-1.375,23.095,49.326)
O4': (-0.940,16.465,47.827)
C8: (-0.298,19.079,48.274)
C2: (-4.181,20.940,48.991)
C6: (-1.998,22.048,49.113)
C5: (-1.489,20.769,48.768)
C4: (-2.377,19.730,48.571)
P: (2.839,14.951,47.077)
C4': (-0.802,16.017,46.455)
C2': (-2.793,17.254,46.583)
O2': (-3.692,16.169,46.550)
N1: (-3.383,22.036,49.200)
N2: (-5.499,21.132,49.149)
N3: (-3.720,19.743,48.662)
N7: (-0.182,20.342,48.579)
N9: (-1.602,18.647,48.248)
O5': (1.272,14.984,46.870)
O3': (-2.020,16.410,44.444)
OP1: (7.216,17.095,49.536)
OP2: (5.805,19.177,50.077)
C3': (2.642,15.326,49.653)
C1': (1.344,15.768,51.574)
C5': (4.859,15.567,50.878)
O4': (2.688,15.591,51.985)
C8: (1.892,18.251,51.469)
O2': (0.764,13.850,50.239)
C6: (-1.161,19.911,51.920)
C5: (-0.025,19.110,51.763)
C4: (-0.209,17.746,51.815)
P: (6.185,17.769,50.376)
C4': (3.456,15.014,50.894)
C2': (1.215,15.187,50.163)
C2: (-2.368,17.959,52.142)
N1: (-2.343,19.292,52.109)
N3: (-1.367,17.097,52.008)
N6: (-1.131,21.241,51.890)
N7: (1.307,19.420,51.546)
N9: (1.033,17.196,51.619)
O5': (4.864,16.883,50.338)
O3': (2.960,14.441,48.593)
OP2: (5.805,19.177,50.077)
C3': (2.642,15.326,49.653)
C1': (1.344,15.768,51.574)
C5': (4.859,15.567,50.878)
O4': (2.688,15.591,51.985)
C8: (1.892,18.251,51.469)
O2': (0.764,13.850,50.239)
C6: (-1.161,19.911,51.920)
C5: (-0.025,19.110,51.763)
C4: (-0.209,17.746,51.815)
P: (6.185,17.769,50.376)
C4': (3.456,15.014,50.894)
C2': (1.215,15.187,50.163)
C2: (-2.368,17.959,52.142)
N1: (-2.343,19.292,52.109)
N3: (-1.367,17.097,52.008)
N6: (-1.131,21.241,51.890)
N7: (1.307,19.420,51.546)
N9: (1.033,17.196,51.619)
O5': (4.864,16.883,50.338)
O3': (2.960,14.441,48.593)
Image (generated by PyMOL):