Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3B4B:B119:B118
Extra
PDB:
ATOM 1 O3' A A 118 7.161 -1.361 -16.081 1.00 54.56 O
ATOM 2 P G A 119 5.631 -1.799 -15.858 1.00 56.12 P
ATOM 3 OP1 G A 119 5.069 -1.957 -17.229 1.00 56.29 O
ATOM 4 OP2 G A 119 4.993 -0.853 -14.903 1.00 55.23 O
ATOM 5 O5' G A 119 5.727 -3.231 -15.154 1.00 55.33 O
ATOM 6 C5' G A 119 6.155 -4.377 -15.888 1.00 54.06 C
ATOM 7 C4' G A 119 6.338 -5.569 -14.972 1.00 53.64 C
ATOM 8 O4' G A 119 7.372 -5.277 -13.991 1.00 52.44 O
ATOM 9 C3' G A 119 5.158 -6.008 -14.113 1.00 53.98 C
ATOM 10 O3' G A 119 4.204 -6.791 -14.836 1.00 56.29 O
ATOM 11 C2' G A 119 5.863 -6.852 -13.058 1.00 52.70 C
ATOM 12 O2' G A 119 6.216 -8.136 -13.534 1.00 52.28 O
ATOM 13 C1' G A 119 7.124 -6.022 -12.805 1.00 50.81 C
ATOM 14 N9 G A 119 6.933 -5.099 -11.688 1.00 47.78 N
ATOM 15 C8 G A 119 6.582 -3.768 -11.747 1.00 45.87 C
ATOM 16 N7 G A 119 6.432 -3.225 -10.568 1.00 44.16 N
ATOM 17 C5 G A 119 6.712 -4.254 -9.676 1.00 44.60 C
ATOM 18 C6 G A 119 6.707 -4.270 -8.251 1.00 43.72 C
ATOM 19 O6 G A 119 6.444 -3.354 -7.471 1.00 45.20 O
ATOM 20 N1 G A 119 7.052 -5.519 -7.750 1.00 42.44 N
ATOM 21 C2 G A 119 7.359 -6.615 -8.513 1.00 42.96 C
ATOM 22 N2 G A 119 7.666 -7.729 -7.838 1.00 41.28 N
ATOM 23 N3 G A 119 7.364 -6.619 -9.840 1.00 43.66 N
ATOM 24 C4 G A 119 7.034 -5.413 -10.350 1.00 45.34 C
ATOM 25 P G A 120 2.674 -6.888 -14.315 1.00 58.34 P
ATOM 26 OP1 G A 120 1.982 -7.814 -15.255 1.00 58.51 O
ATOM 27 OP2 G A 120 2.125 -5.517 -14.098 1.00 58.01 O
ATOM 28 O5' G A 120 2.768 -7.619 -12.895 1.00 57.46 O
TER
ATOM 1 O3' C B 117 8.735 4.151 -13.883 1.00 52.27 O
ATOM 2 P A B 118 7.373 3.292 -13.812 1.00 52.50 P
ATOM 3 OP1 A B 118 6.514 3.768 -14.924 1.00 53.92 O
ATOM 4 OP2 A B 118 6.849 3.318 -12.427 1.00 52.80 O
ATOM 5 O5' A B 118 7.844 1.799 -14.113 1.00 52.10 O
ATOM 6 C5' A B 118 8.511 1.477 -15.331 1.00 51.76 C
ATOM 7 C4' A B 118 8.996 0.044 -15.308 1.00 51.74 C
ATOM 8 O4' A B 118 10.011 -0.120 -14.282 1.00 50.38 O
ATOM 9 C3' A B 118 7.963 -1.016 -14.960 1.00 52.37 C
ATOM 10 O3' A B 118 7.161 -1.361 -16.081 1.00 54.56 O
ATOM 11 C2' A B 118 8.842 -2.177 -14.511 1.00 51.02 C
ATOM 12 O2' A B 118 9.402 -2.915 -15.582 1.00 50.51 O
ATOM 13 C1' A B 118 9.939 -1.434 -13.747 1.00 49.19 C
ATOM 14 N9 A B 118 9.637 -1.338 -12.320 1.00 46.07 N
ATOM 15 C8 A B 118 9.053 -0.297 -11.641 1.00 45.56 C
ATOM 16 N7 A B 118 8.903 -0.520 -10.357 1.00 44.54 N
ATOM 17 C5 A B 118 9.428 -1.792 -10.177 1.00 43.84 C
ATOM 18 C6 A B 118 9.571 -2.605 -9.039 1.00 42.81 C
ATOM 19 N6 A B 118 9.187 -2.239 -7.815 1.00 41.30 N
ATOM 20 N1 A B 118 10.132 -3.822 -9.203 1.00 41.78 N
ATOM 21 C2 A B 118 10.524 -4.186 -10.431 1.00 42.08 C
ATOM 22 N3 A B 118 10.447 -3.513 -11.576 1.00 42.80 N
ATOM 23 C4 A B 118 9.883 -2.308 -11.379 1.00 44.76 C
ATOM 24 P G B 119 5.631 -1.799 -15.858 1.00 56.12 P
ATOM 25 OP1 G B 119 5.069 -1.957 -17.229 1.00 56.29 O
ATOM 26 OP2 G B 119 4.993 -0.853 -14.903 1.00 55.23 O
ATOM 27 O5' G B 119 5.727 -3.231 -15.154 1.00 55.33 O
TER
ATOM 2 P G A 119 5.631 -1.799 -15.858 1.00 56.12 P
ATOM 3 OP1 G A 119 5.069 -1.957 -17.229 1.00 56.29 O
ATOM 4 OP2 G A 119 4.993 -0.853 -14.903 1.00 55.23 O
ATOM 5 O5' G A 119 5.727 -3.231 -15.154 1.00 55.33 O
ATOM 6 C5' G A 119 6.155 -4.377 -15.888 1.00 54.06 C
ATOM 7 C4' G A 119 6.338 -5.569 -14.972 1.00 53.64 C
ATOM 8 O4' G A 119 7.372 -5.277 -13.991 1.00 52.44 O
ATOM 9 C3' G A 119 5.158 -6.008 -14.113 1.00 53.98 C
ATOM 10 O3' G A 119 4.204 -6.791 -14.836 1.00 56.29 O
ATOM 11 C2' G A 119 5.863 -6.852 -13.058 1.00 52.70 C
ATOM 12 O2' G A 119 6.216 -8.136 -13.534 1.00 52.28 O
ATOM 13 C1' G A 119 7.124 -6.022 -12.805 1.00 50.81 C
ATOM 14 N9 G A 119 6.933 -5.099 -11.688 1.00 47.78 N
ATOM 15 C8 G A 119 6.582 -3.768 -11.747 1.00 45.87 C
ATOM 16 N7 G A 119 6.432 -3.225 -10.568 1.00 44.16 N
ATOM 17 C5 G A 119 6.712 -4.254 -9.676 1.00 44.60 C
ATOM 18 C6 G A 119 6.707 -4.270 -8.251 1.00 43.72 C
ATOM 19 O6 G A 119 6.444 -3.354 -7.471 1.00 45.20 O
ATOM 20 N1 G A 119 7.052 -5.519 -7.750 1.00 42.44 N
ATOM 21 C2 G A 119 7.359 -6.615 -8.513 1.00 42.96 C
ATOM 22 N2 G A 119 7.666 -7.729 -7.838 1.00 41.28 N
ATOM 23 N3 G A 119 7.364 -6.619 -9.840 1.00 43.66 N
ATOM 24 C4 G A 119 7.034 -5.413 -10.350 1.00 45.34 C
ATOM 25 P G A 120 2.674 -6.888 -14.315 1.00 58.34 P
ATOM 26 OP1 G A 120 1.982 -7.814 -15.255 1.00 58.51 O
ATOM 27 OP2 G A 120 2.125 -5.517 -14.098 1.00 58.01 O
ATOM 28 O5' G A 120 2.768 -7.619 -12.895 1.00 57.46 O
TER
ATOM 1 O3' C B 117 8.735 4.151 -13.883 1.00 52.27 O
ATOM 2 P A B 118 7.373 3.292 -13.812 1.00 52.50 P
ATOM 3 OP1 A B 118 6.514 3.768 -14.924 1.00 53.92 O
ATOM 4 OP2 A B 118 6.849 3.318 -12.427 1.00 52.80 O
ATOM 5 O5' A B 118 7.844 1.799 -14.113 1.00 52.10 O
ATOM 6 C5' A B 118 8.511 1.477 -15.331 1.00 51.76 C
ATOM 7 C4' A B 118 8.996 0.044 -15.308 1.00 51.74 C
ATOM 8 O4' A B 118 10.011 -0.120 -14.282 1.00 50.38 O
ATOM 9 C3' A B 118 7.963 -1.016 -14.960 1.00 52.37 C
ATOM 10 O3' A B 118 7.161 -1.361 -16.081 1.00 54.56 O
ATOM 11 C2' A B 118 8.842 -2.177 -14.511 1.00 51.02 C
ATOM 12 O2' A B 118 9.402 -2.915 -15.582 1.00 50.51 O
ATOM 13 C1' A B 118 9.939 -1.434 -13.747 1.00 49.19 C
ATOM 14 N9 A B 118 9.637 -1.338 -12.320 1.00 46.07 N
ATOM 15 C8 A B 118 9.053 -0.297 -11.641 1.00 45.56 C
ATOM 16 N7 A B 118 8.903 -0.520 -10.357 1.00 44.54 N
ATOM 17 C5 A B 118 9.428 -1.792 -10.177 1.00 43.84 C
ATOM 18 C6 A B 118 9.571 -2.605 -9.039 1.00 42.81 C
ATOM 19 N6 A B 118 9.187 -2.239 -7.815 1.00 41.30 N
ATOM 20 N1 A B 118 10.132 -3.822 -9.203 1.00 41.78 N
ATOM 21 C2 A B 118 10.524 -4.186 -10.431 1.00 42.08 C
ATOM 22 N3 A B 118 10.447 -3.513 -11.576 1.00 42.80 N
ATOM 23 C4 A B 118 9.883 -2.308 -11.379 1.00 44.76 C
ATOM 24 P G B 119 5.631 -1.799 -15.858 1.00 56.12 P
ATOM 25 OP1 G B 119 5.069 -1.957 -17.229 1.00 56.29 O
ATOM 26 OP2 G B 119 4.993 -0.853 -14.903 1.00 55.23 O
ATOM 27 O5' G B 119 5.727 -3.231 -15.154 1.00 55.33 O
TER
Atoms:
OP1: (5.069,-1.957,-17.229)
OP2: (4.993,-0.853,-14.903)
C3': (5.158,-6.008,-14.113)
C1': (7.124,-6.022,-12.805)
C5': (6.155,-4.377,-15.888)
O6: (6.444,-3.354,-7.471)
O4': (7.372,-5.277,-13.991)
C8: (6.582,-3.768,-11.747)
C2: (7.359,-6.615,-8.513)
C6: (6.707,-4.270,-8.251)
C5: (6.712,-4.254,-9.676)
C4: (7.034,-5.413,-10.350)
P: (5.631,-1.799,-15.858)
C4': (6.338,-5.569,-14.972)
C2': (5.863,-6.852,-13.058)
O2': (6.216,-8.136,-13.534)
N1: (7.052,-5.519,-7.750)
N2: (7.666,-7.729,-7.838)
N3: (7.364,-6.619,-9.840)
N7: (6.432,-3.225,-10.568)
N9: (6.933,-5.099,-11.688)
O5': (5.727,-3.231,-15.154)
O3': (4.204,-6.791,-14.836)
OP2: (4.993,-0.853,-14.903)
C3': (5.158,-6.008,-14.113)
C1': (7.124,-6.022,-12.805)
C5': (6.155,-4.377,-15.888)
O6: (6.444,-3.354,-7.471)
O4': (7.372,-5.277,-13.991)
C8: (6.582,-3.768,-11.747)
C2: (7.359,-6.615,-8.513)
C6: (6.707,-4.270,-8.251)
C5: (6.712,-4.254,-9.676)
C4: (7.034,-5.413,-10.350)
P: (5.631,-1.799,-15.858)
C4': (6.338,-5.569,-14.972)
C2': (5.863,-6.852,-13.058)
O2': (6.216,-8.136,-13.534)
N1: (7.052,-5.519,-7.750)
N2: (7.666,-7.729,-7.838)
N3: (7.364,-6.619,-9.840)
N7: (6.432,-3.225,-10.568)
N9: (6.933,-5.099,-11.688)
O5': (5.727,-3.231,-15.154)
O3': (4.204,-6.791,-14.836)
OP1: (6.514,3.768,-14.924)
OP2: (6.849,3.318,-12.427)
C3': (7.963,-1.016,-14.960)
C1': (9.939,-1.434,-13.747)
C5': (8.511,1.477,-15.331)
O4': (10.011,-0.120,-14.282)
C8: (9.053,-0.297,-11.641)
O2': (9.402,-2.915,-15.582)
C6: (9.571,-2.605,-9.039)
C5: (9.428,-1.792,-10.177)
C4: (9.883,-2.308,-11.379)
P: (7.373,3.292,-13.812)
C4': (8.996,0.044,-15.308)
C2': (8.842,-2.177,-14.511)
C2: (10.524,-4.186,-10.431)
N1: (10.132,-3.822,-9.203)
N3: (10.447,-3.513,-11.576)
N6: (9.187,-2.239,-7.815)
N7: (8.903,-0.520,-10.357)
N9: (9.637,-1.338,-12.320)
O5': (7.844,1.799,-14.113)
O3': (7.161,-1.361,-16.081)
OP2: (6.849,3.318,-12.427)
C3': (7.963,-1.016,-14.960)
C1': (9.939,-1.434,-13.747)
C5': (8.511,1.477,-15.331)
O4': (10.011,-0.120,-14.282)
C8: (9.053,-0.297,-11.641)
O2': (9.402,-2.915,-15.582)
C6: (9.571,-2.605,-9.039)
C5: (9.428,-1.792,-10.177)
C4: (9.883,-2.308,-11.379)
P: (7.373,3.292,-13.812)
C4': (8.996,0.044,-15.308)
C2': (8.842,-2.177,-14.511)
C2: (10.524,-4.186,-10.431)
N1: (10.132,-3.822,-9.203)
N3: (10.447,-3.513,-11.576)
N6: (9.187,-2.239,-7.815)
N7: (8.903,-0.520,-10.357)
N9: (9.637,-1.338,-12.320)
O5': (7.844,1.799,-14.113)
O3': (7.161,-1.361,-16.081)
Image (generated by PyMOL):