Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3BOY:D4:D3
Extra
PDB:
ATOM 1 O3' A A 3 11.614 -14.700 23.979 1.00 25.62 O
ATOM 2 P G A 4 13.174 -14.783 24.396 1.00 29.34 P
ATOM 3 OP1 G A 4 13.808 -13.919 23.391 1.00 28.95 O
ATOM 4 OP2 G A 4 13.510 -16.194 24.644 1.00 29.65 O
ATOM 5 O5' G A 4 13.237 -13.957 25.795 1.00 26.14 O
ATOM 6 C5' G A 4 12.781 -12.572 25.877 1.00 26.45 C
ATOM 7 C4' G A 4 12.678 -12.249 27.347 1.00 26.62 C
ATOM 8 O4' G A 4 11.773 -13.201 27.933 1.00 24.46 O
ATOM 9 C3' G A 4 14.020 -12.438 28.047 1.00 28.21 C
ATOM 10 O3' G A 4 14.267 -11.389 28.978 1.00 35.18 O
ATOM 11 C2' G A 4 13.910 -13.787 28.739 1.00 25.27 C
ATOM 12 O2' G A 4 14.575 -13.847 29.985 1.00 26.49 O
ATOM 13 C1' G A 4 12.393 -13.945 28.945 1.00 23.78 C
ATOM 14 N9 G A 4 12.019 -15.345 28.924 1.00 22.76 N
ATOM 15 C8 G A 4 12.470 -16.336 28.067 1.00 21.34 C
ATOM 16 N7 G A 4 11.971 -17.502 28.349 1.00 21.96 N
ATOM 17 C5 G A 4 11.137 -17.288 29.430 1.00 21.00 C
ATOM 18 C6 G A 4 10.333 -18.192 30.179 1.00 22.37 C
ATOM 19 O6 G A 4 10.174 -19.399 30.042 1.00 21.58 O
ATOM 20 N1 G A 4 9.609 -17.549 31.208 1.00 20.98 N
ATOM 21 C2 G A 4 9.712 -16.197 31.468 1.00 21.22 C
ATOM 22 N2 G A 4 8.967 -15.727 32.500 1.00 21.03 N
ATOM 23 N3 G A 4 10.485 -15.348 30.793 1.00 19.84 N
ATOM 24 C4 G A 4 11.158 -15.967 29.785 1.00 23.54 C
ATOM 25 P U A 5 15.156 -10.127 28.588 1.00 40.94 P
ATOM 26 OP1 U A 5 14.197 -9.018 28.334 1.00 46.35 O
ATOM 27 OP2 U A 5 16.056 -10.466 27.474 1.00 45.05 O
ATOM 28 O5' U A 5 15.976 -9.848 29.912 1.00 44.56 O
TER
ATOM 1 O3' U B 2 9.420 -19.910 22.934 1.00 45.91 O
ATOM 2 P A B 3 10.826 -19.444 22.430 1.00 44.05 P
ATOM 3 OP1 A B 3 10.846 -19.329 20.947 1.00 44.31 O
ATOM 4 OP2 A B 3 11.812 -20.321 23.096 1.00 46.28 O
ATOM 5 O5' A B 3 10.820 -17.979 23.104 1.00 37.28 O
ATOM 6 C5' A B 3 10.149 -16.915 22.473 1.00 29.04 C
ATOM 7 C4' A B 3 9.693 -15.892 23.497 1.00 26.15 C
ATOM 8 O4' A B 3 8.590 -16.416 24.253 1.00 23.63 O
ATOM 9 C3' A B 3 10.729 -15.598 24.566 1.00 23.52 C
ATOM 10 O3' A B 3 11.614 -14.700 23.979 1.00 25.62 O
ATOM 11 C2' A B 3 9.856 -14.957 25.673 1.00 21.98 C
ATOM 12 O2' A B 3 9.429 -13.675 25.302 1.00 21.41 O
ATOM 13 C1' A B 3 8.635 -15.853 25.578 1.00 21.17 C
ATOM 14 N9 A B 3 8.473 -16.976 26.496 1.00 21.07 N
ATOM 15 C8 A B 3 8.939 -18.259 26.308 1.00 20.61 C
ATOM 16 N7 A B 3 8.606 -19.090 27.252 1.00 21.76 N
ATOM 17 C5 A B 3 7.829 -18.309 28.126 1.00 20.48 C
ATOM 18 C6 A B 3 7.156 -18.609 29.338 1.00 23.15 C
ATOM 19 N6 A B 3 7.138 -19.797 29.951 1.00 20.88 N
ATOM 20 N1 A B 3 6.473 -17.592 29.938 1.00 20.18 N
ATOM 21 C2 A B 3 6.494 -16.384 29.370 1.00 20.38 C
ATOM 22 N3 A B 3 7.080 -15.973 28.236 1.00 19.94 N
ATOM 23 C4 A B 3 7.744 -17.009 27.653 1.00 21.57 C
ATOM 24 P G B 4 13.174 -14.783 24.396 1.00 29.34 P
ATOM 25 OP1 G B 4 13.808 -13.919 23.391 1.00 28.95 O
ATOM 26 OP2 G B 4 13.510 -16.194 24.644 1.00 29.65 O
ATOM 27 O5' G B 4 13.237 -13.957 25.795 1.00 26.14 O
TER
ATOM 2 P G A 4 13.174 -14.783 24.396 1.00 29.34 P
ATOM 3 OP1 G A 4 13.808 -13.919 23.391 1.00 28.95 O
ATOM 4 OP2 G A 4 13.510 -16.194 24.644 1.00 29.65 O
ATOM 5 O5' G A 4 13.237 -13.957 25.795 1.00 26.14 O
ATOM 6 C5' G A 4 12.781 -12.572 25.877 1.00 26.45 C
ATOM 7 C4' G A 4 12.678 -12.249 27.347 1.00 26.62 C
ATOM 8 O4' G A 4 11.773 -13.201 27.933 1.00 24.46 O
ATOM 9 C3' G A 4 14.020 -12.438 28.047 1.00 28.21 C
ATOM 10 O3' G A 4 14.267 -11.389 28.978 1.00 35.18 O
ATOM 11 C2' G A 4 13.910 -13.787 28.739 1.00 25.27 C
ATOM 12 O2' G A 4 14.575 -13.847 29.985 1.00 26.49 O
ATOM 13 C1' G A 4 12.393 -13.945 28.945 1.00 23.78 C
ATOM 14 N9 G A 4 12.019 -15.345 28.924 1.00 22.76 N
ATOM 15 C8 G A 4 12.470 -16.336 28.067 1.00 21.34 C
ATOM 16 N7 G A 4 11.971 -17.502 28.349 1.00 21.96 N
ATOM 17 C5 G A 4 11.137 -17.288 29.430 1.00 21.00 C
ATOM 18 C6 G A 4 10.333 -18.192 30.179 1.00 22.37 C
ATOM 19 O6 G A 4 10.174 -19.399 30.042 1.00 21.58 O
ATOM 20 N1 G A 4 9.609 -17.549 31.208 1.00 20.98 N
ATOM 21 C2 G A 4 9.712 -16.197 31.468 1.00 21.22 C
ATOM 22 N2 G A 4 8.967 -15.727 32.500 1.00 21.03 N
ATOM 23 N3 G A 4 10.485 -15.348 30.793 1.00 19.84 N
ATOM 24 C4 G A 4 11.158 -15.967 29.785 1.00 23.54 C
ATOM 25 P U A 5 15.156 -10.127 28.588 1.00 40.94 P
ATOM 26 OP1 U A 5 14.197 -9.018 28.334 1.00 46.35 O
ATOM 27 OP2 U A 5 16.056 -10.466 27.474 1.00 45.05 O
ATOM 28 O5' U A 5 15.976 -9.848 29.912 1.00 44.56 O
TER
ATOM 1 O3' U B 2 9.420 -19.910 22.934 1.00 45.91 O
ATOM 2 P A B 3 10.826 -19.444 22.430 1.00 44.05 P
ATOM 3 OP1 A B 3 10.846 -19.329 20.947 1.00 44.31 O
ATOM 4 OP2 A B 3 11.812 -20.321 23.096 1.00 46.28 O
ATOM 5 O5' A B 3 10.820 -17.979 23.104 1.00 37.28 O
ATOM 6 C5' A B 3 10.149 -16.915 22.473 1.00 29.04 C
ATOM 7 C4' A B 3 9.693 -15.892 23.497 1.00 26.15 C
ATOM 8 O4' A B 3 8.590 -16.416 24.253 1.00 23.63 O
ATOM 9 C3' A B 3 10.729 -15.598 24.566 1.00 23.52 C
ATOM 10 O3' A B 3 11.614 -14.700 23.979 1.00 25.62 O
ATOM 11 C2' A B 3 9.856 -14.957 25.673 1.00 21.98 C
ATOM 12 O2' A B 3 9.429 -13.675 25.302 1.00 21.41 O
ATOM 13 C1' A B 3 8.635 -15.853 25.578 1.00 21.17 C
ATOM 14 N9 A B 3 8.473 -16.976 26.496 1.00 21.07 N
ATOM 15 C8 A B 3 8.939 -18.259 26.308 1.00 20.61 C
ATOM 16 N7 A B 3 8.606 -19.090 27.252 1.00 21.76 N
ATOM 17 C5 A B 3 7.829 -18.309 28.126 1.00 20.48 C
ATOM 18 C6 A B 3 7.156 -18.609 29.338 1.00 23.15 C
ATOM 19 N6 A B 3 7.138 -19.797 29.951 1.00 20.88 N
ATOM 20 N1 A B 3 6.473 -17.592 29.938 1.00 20.18 N
ATOM 21 C2 A B 3 6.494 -16.384 29.370 1.00 20.38 C
ATOM 22 N3 A B 3 7.080 -15.973 28.236 1.00 19.94 N
ATOM 23 C4 A B 3 7.744 -17.009 27.653 1.00 21.57 C
ATOM 24 P G B 4 13.174 -14.783 24.396 1.00 29.34 P
ATOM 25 OP1 G B 4 13.808 -13.919 23.391 1.00 28.95 O
ATOM 26 OP2 G B 4 13.510 -16.194 24.644 1.00 29.65 O
ATOM 27 O5' G B 4 13.237 -13.957 25.795 1.00 26.14 O
TER
Atoms:
OP1: (13.808,-13.919,23.391)
OP2: (13.510,-16.194,24.644)
C3': (14.020,-12.438,28.047)
C1': (12.393,-13.945,28.945)
C5': (12.781,-12.572,25.877)
O6: (10.174,-19.399,30.042)
O4': (11.773,-13.201,27.933)
C8: (12.470,-16.336,28.067)
C2: (9.712,-16.197,31.468)
C6: (10.333,-18.192,30.179)
C5: (11.137,-17.288,29.430)
C4: (11.158,-15.967,29.785)
P: (13.174,-14.783,24.396)
C4': (12.678,-12.249,27.347)
C2': (13.910,-13.787,28.739)
O2': (14.575,-13.847,29.985)
N1: (9.609,-17.549,31.208)
N2: (8.967,-15.727,32.500)
N3: (10.485,-15.348,30.793)
N7: (11.971,-17.502,28.349)
N9: (12.019,-15.345,28.924)
O5': (13.237,-13.957,25.795)
O3': (14.267,-11.389,28.978)
OP2: (13.510,-16.194,24.644)
C3': (14.020,-12.438,28.047)
C1': (12.393,-13.945,28.945)
C5': (12.781,-12.572,25.877)
O6: (10.174,-19.399,30.042)
O4': (11.773,-13.201,27.933)
C8: (12.470,-16.336,28.067)
C2: (9.712,-16.197,31.468)
C6: (10.333,-18.192,30.179)
C5: (11.137,-17.288,29.430)
C4: (11.158,-15.967,29.785)
P: (13.174,-14.783,24.396)
C4': (12.678,-12.249,27.347)
C2': (13.910,-13.787,28.739)
O2': (14.575,-13.847,29.985)
N1: (9.609,-17.549,31.208)
N2: (8.967,-15.727,32.500)
N3: (10.485,-15.348,30.793)
N7: (11.971,-17.502,28.349)
N9: (12.019,-15.345,28.924)
O5': (13.237,-13.957,25.795)
O3': (14.267,-11.389,28.978)
OP1: (10.846,-19.329,20.947)
OP2: (11.812,-20.321,23.096)
C3': (10.729,-15.598,24.566)
C1': (8.635,-15.853,25.578)
C5': (10.149,-16.915,22.473)
O4': (8.590,-16.416,24.253)
C8: (8.939,-18.259,26.308)
O2': (9.429,-13.675,25.302)
C6: (7.156,-18.609,29.338)
C5: (7.829,-18.309,28.126)
C4: (7.744,-17.009,27.653)
P: (10.826,-19.444,22.430)
C4': (9.693,-15.892,23.497)
C2': (9.856,-14.957,25.673)
C2: (6.494,-16.384,29.370)
N1: (6.473,-17.592,29.938)
N3: (7.080,-15.973,28.236)
N6: (7.138,-19.797,29.951)
N7: (8.606,-19.090,27.252)
N9: (8.473,-16.976,26.496)
O5': (10.820,-17.979,23.104)
O3': (11.614,-14.700,23.979)
OP2: (11.812,-20.321,23.096)
C3': (10.729,-15.598,24.566)
C1': (8.635,-15.853,25.578)
C5': (10.149,-16.915,22.473)
O4': (8.590,-16.416,24.253)
C8: (8.939,-18.259,26.308)
O2': (9.429,-13.675,25.302)
C6: (7.156,-18.609,29.338)
C5: (7.829,-18.309,28.126)
C4: (7.744,-17.009,27.653)
P: (10.826,-19.444,22.430)
C4': (9.693,-15.892,23.497)
C2': (9.856,-14.957,25.673)
C2: (6.494,-16.384,29.370)
N1: (6.473,-17.592,29.938)
N3: (7.080,-15.973,28.236)
N6: (7.138,-19.797,29.951)
N7: (8.606,-19.090,27.252)
N9: (8.473,-16.976,26.496)
O5': (10.820,-17.979,23.104)
O3': (11.614,-14.700,23.979)
Image (generated by PyMOL):