Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0580:0579
Extra
PDB:
ATOM 1 O3' A A 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' A B 578 -11.413 100.238 107.516 1.00 66.12 O
ATOM 2 P A B 579 -10.780 100.662 106.101 1.00 68.46 P
ATOM 3 OP1 A B 579 -11.424 101.936 105.694 1.00 70.27 O
ATOM 4 OP2 A B 579 -10.831 99.485 105.187 1.00 67.45 O
ATOM 5 O5' A B 579 -9.253 100.971 106.439 1.00 67.48 O
ATOM 6 C5' A B 579 -8.888 102.015 107.367 1.00 63.68 C
ATOM 7 C4' A B 579 -7.410 101.941 107.680 1.00 61.49 C
ATOM 8 O4' A B 579 -7.103 100.624 108.215 1.00 61.19 O
ATOM 9 C3' A B 579 -6.471 102.067 106.492 1.00 59.47 C
ATOM 10 O3' A B 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 11 C2' A B 579 -5.211 101.391 107.018 1.00 58.93 C
ATOM 12 O2' A B 579 -4.483 102.184 107.935 1.00 58.65 O
ATOM 13 C1' A B 579 -5.814 100.215 107.782 1.00 57.80 C
ATOM 14 N9 A B 579 -5.972 99.038 106.932 1.00 54.94 N
ATOM 15 C8 A B 579 -7.130 98.519 106.412 1.00 53.81 C
ATOM 16 N7 A B 579 -6.944 97.462 105.661 1.00 54.06 N
ATOM 17 C5 A B 579 -5.570 97.268 105.691 1.00 53.01 C
ATOM 18 C6 A B 579 -4.732 96.312 105.082 1.00 52.01 C
ATOM 19 N6 A B 579 -5.174 95.333 104.293 1.00 50.54 N
ATOM 20 N1 A B 579 -3.407 96.401 105.315 1.00 51.75 N
ATOM 21 C2 A B 579 -2.960 97.389 106.103 1.00 52.79 C
ATOM 22 N3 A B 579 -3.645 98.348 106.726 1.00 52.96 N
ATOM 23 C4 A B 579 -4.960 98.229 106.476 1.00 53.77 C
ATOM 24 P G B 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 25 OP1 G B 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 26 OP2 G B 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 27 O5' G B 580 -5.072 103.035 103.926 1.00 58.31 O
TER
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' A B 578 -11.413 100.238 107.516 1.00 66.12 O
ATOM 2 P A B 579 -10.780 100.662 106.101 1.00 68.46 P
ATOM 3 OP1 A B 579 -11.424 101.936 105.694 1.00 70.27 O
ATOM 4 OP2 A B 579 -10.831 99.485 105.187 1.00 67.45 O
ATOM 5 O5' A B 579 -9.253 100.971 106.439 1.00 67.48 O
ATOM 6 C5' A B 579 -8.888 102.015 107.367 1.00 63.68 C
ATOM 7 C4' A B 579 -7.410 101.941 107.680 1.00 61.49 C
ATOM 8 O4' A B 579 -7.103 100.624 108.215 1.00 61.19 O
ATOM 9 C3' A B 579 -6.471 102.067 106.492 1.00 59.47 C
ATOM 10 O3' A B 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 11 C2' A B 579 -5.211 101.391 107.018 1.00 58.93 C
ATOM 12 O2' A B 579 -4.483 102.184 107.935 1.00 58.65 O
ATOM 13 C1' A B 579 -5.814 100.215 107.782 1.00 57.80 C
ATOM 14 N9 A B 579 -5.972 99.038 106.932 1.00 54.94 N
ATOM 15 C8 A B 579 -7.130 98.519 106.412 1.00 53.81 C
ATOM 16 N7 A B 579 -6.944 97.462 105.661 1.00 54.06 N
ATOM 17 C5 A B 579 -5.570 97.268 105.691 1.00 53.01 C
ATOM 18 C6 A B 579 -4.732 96.312 105.082 1.00 52.01 C
ATOM 19 N6 A B 579 -5.174 95.333 104.293 1.00 50.54 N
ATOM 20 N1 A B 579 -3.407 96.401 105.315 1.00 51.75 N
ATOM 21 C2 A B 579 -2.960 97.389 106.103 1.00 52.79 C
ATOM 22 N3 A B 579 -3.645 98.348 106.726 1.00 52.96 N
ATOM 23 C4 A B 579 -4.960 98.229 106.476 1.00 53.77 C
ATOM 24 P G B 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 25 OP1 G B 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 26 OP2 G B 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 27 O5' G B 580 -5.072 103.035 103.926 1.00 58.31 O
TER
Atoms:
OP1: (-6.009,105.285,104.510)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP1: (-11.424,101.936,105.694)
OP2: (-10.831,99.485,105.187)
C3': (-6.471,102.067,106.492)
C1': (-5.814,100.215,107.782)
C5': (-8.888,102.015,107.367)
O4': (-7.103,100.624,108.215)
C8: (-7.130,98.519,106.412)
O2': (-4.483,102.184,107.935)
C6: (-4.732,96.312,105.082)
C5: (-5.570,97.268,105.691)
C4: (-4.960,98.229,106.476)
P: (-10.780,100.662,106.101)
C4': (-7.410,101.941,107.680)
C2': (-5.211,101.391,107.018)
C2: (-2.960,97.389,106.103)
N1: (-3.407,96.401,105.315)
N3: (-3.645,98.348,106.726)
N6: (-5.174,95.333,104.293)
N7: (-6.944,97.462,105.661)
N9: (-5.972,99.038,106.932)
O5': (-9.253,100.971,106.439)
O3': (-6.264,103.421,106.118)
OP2: (-10.831,99.485,105.187)
C3': (-6.471,102.067,106.492)
C1': (-5.814,100.215,107.782)
C5': (-8.888,102.015,107.367)
O4': (-7.103,100.624,108.215)
C8: (-7.130,98.519,106.412)
O2': (-4.483,102.184,107.935)
C6: (-4.732,96.312,105.082)
C5: (-5.570,97.268,105.691)
C4: (-4.960,98.229,106.476)
P: (-10.780,100.662,106.101)
C4': (-7.410,101.941,107.680)
C2': (-5.211,101.391,107.018)
C2: (-2.960,97.389,106.103)
N1: (-3.407,96.401,105.315)
N3: (-3.645,98.348,106.726)
N6: (-5.174,95.333,104.293)
N7: (-6.944,97.462,105.661)
N9: (-5.972,99.038,106.932)
O5': (-9.253,100.971,106.439)
O3': (-6.264,103.421,106.118)
Image (generated by PyMOL):