Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ7:0580:0579
Extra
PDB:
ATOM 1 O3' A A 579 -6.643 103.461 106.064 1.00 68.27 O
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' A B 578 -11.772 100.202 107.512 1.00 69.84 O
ATOM 2 P A B 579 -11.228 100.739 106.097 1.00 71.34 P
ATOM 3 OP1 A B 579 -11.923 102.029 105.854 1.00 72.48 O
ATOM 4 OP2 A B 579 -11.338 99.640 105.093 1.00 68.32 O
ATOM 5 O5' A B 579 -9.681 101.035 106.364 1.00 71.48 O
ATOM 6 C5' A B 579 -9.266 102.014 107.352 1.00 70.60 C
ATOM 7 C4' A B 579 -7.768 101.923 107.605 1.00 69.73 C
ATOM 8 O4' A B 579 -7.428 100.593 108.094 1.00 69.40 O
ATOM 9 C3' A B 579 -6.856 102.097 106.399 1.00 69.37 C
ATOM 10 O3' A B 579 -6.643 103.461 106.064 1.00 68.27 O
ATOM 11 C2' A B 579 -5.575 101.431 106.877 1.00 68.03 C
ATOM 12 O2' A B 579 -4.870 102.254 107.785 1.00 69.08 O
ATOM 13 C1' A B 579 -6.137 100.222 107.625 1.00 66.13 C
ATOM 14 N9 A B 579 -6.281 99.054 106.756 1.00 62.30 N
ATOM 15 C8 A B 579 -7.432 98.556 106.204 1.00 61.19 C
ATOM 16 N7 A B 579 -7.242 97.507 105.444 1.00 62.11 N
ATOM 17 C5 A B 579 -5.874 97.295 105.501 1.00 59.69 C
ATOM 18 C6 A B 579 -5.040 96.336 104.900 1.00 58.71 C
ATOM 19 N6 A B 579 -5.479 95.374 104.092 1.00 55.81 N
ATOM 20 N1 A B 579 -3.719 96.402 105.162 1.00 59.47 N
ATOM 21 C2 A B 579 -3.274 97.371 105.974 1.00 60.52 C
ATOM 22 N3 A B 579 -3.957 98.331 106.595 1.00 61.72 N
ATOM 23 C4 A B 579 -5.269 98.236 106.312 1.00 61.61 C
ATOM 24 P G B 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 25 OP1 G B 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 26 OP2 G B 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 27 O5' G B 580 -5.453 102.979 103.884 1.00 67.45 O
TER
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' A B 578 -11.772 100.202 107.512 1.00 69.84 O
ATOM 2 P A B 579 -11.228 100.739 106.097 1.00 71.34 P
ATOM 3 OP1 A B 579 -11.923 102.029 105.854 1.00 72.48 O
ATOM 4 OP2 A B 579 -11.338 99.640 105.093 1.00 68.32 O
ATOM 5 O5' A B 579 -9.681 101.035 106.364 1.00 71.48 O
ATOM 6 C5' A B 579 -9.266 102.014 107.352 1.00 70.60 C
ATOM 7 C4' A B 579 -7.768 101.923 107.605 1.00 69.73 C
ATOM 8 O4' A B 579 -7.428 100.593 108.094 1.00 69.40 O
ATOM 9 C3' A B 579 -6.856 102.097 106.399 1.00 69.37 C
ATOM 10 O3' A B 579 -6.643 103.461 106.064 1.00 68.27 O
ATOM 11 C2' A B 579 -5.575 101.431 106.877 1.00 68.03 C
ATOM 12 O2' A B 579 -4.870 102.254 107.785 1.00 69.08 O
ATOM 13 C1' A B 579 -6.137 100.222 107.625 1.00 66.13 C
ATOM 14 N9 A B 579 -6.281 99.054 106.756 1.00 62.30 N
ATOM 15 C8 A B 579 -7.432 98.556 106.204 1.00 61.19 C
ATOM 16 N7 A B 579 -7.242 97.507 105.444 1.00 62.11 N
ATOM 17 C5 A B 579 -5.874 97.295 105.501 1.00 59.69 C
ATOM 18 C6 A B 579 -5.040 96.336 104.900 1.00 58.71 C
ATOM 19 N6 A B 579 -5.479 95.374 104.092 1.00 55.81 N
ATOM 20 N1 A B 579 -3.719 96.402 105.162 1.00 59.47 N
ATOM 21 C2 A B 579 -3.274 97.371 105.974 1.00 60.52 C
ATOM 22 N3 A B 579 -3.957 98.331 106.595 1.00 61.72 N
ATOM 23 C4 A B 579 -5.269 98.236 106.312 1.00 61.61 C
ATOM 24 P G B 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 25 OP1 G B 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 26 OP2 G B 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 27 O5' G B 580 -5.453 102.979 103.884 1.00 67.45 O
TER
Atoms:
OP1: (-6.170,105.318,104.497)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP1: (-11.923,102.029,105.854)
OP2: (-11.338,99.640,105.093)
C3': (-6.856,102.097,106.399)
C1': (-6.137,100.222,107.625)
C5': (-9.266,102.014,107.352)
O4': (-7.428,100.593,108.094)
C8: (-7.432,98.556,106.204)
O2': (-4.870,102.254,107.785)
C6: (-5.040,96.336,104.900)
C5: (-5.874,97.295,105.501)
C4: (-5.269,98.236,106.312)
P: (-11.228,100.739,106.097)
C4': (-7.768,101.923,107.605)
C2': (-5.575,101.431,106.877)
C2: (-3.274,97.371,105.974)
N1: (-3.719,96.402,105.162)
N3: (-3.957,98.331,106.595)
N6: (-5.479,95.374,104.092)
N7: (-7.242,97.507,105.444)
N9: (-6.281,99.054,106.756)
O5': (-9.681,101.035,106.364)
O3': (-6.643,103.461,106.064)
OP2: (-11.338,99.640,105.093)
C3': (-6.856,102.097,106.399)
C1': (-6.137,100.222,107.625)
C5': (-9.266,102.014,107.352)
O4': (-7.428,100.593,108.094)
C8: (-7.432,98.556,106.204)
O2': (-4.870,102.254,107.785)
C6: (-5.040,96.336,104.900)
C5: (-5.874,97.295,105.501)
C4: (-5.269,98.236,106.312)
P: (-11.228,100.739,106.097)
C4': (-7.768,101.923,107.605)
C2': (-5.575,101.431,106.877)
C2: (-3.274,97.371,105.974)
N1: (-3.719,96.402,105.162)
N3: (-3.957,98.331,106.595)
N6: (-5.479,95.374,104.092)
N7: (-7.242,97.507,105.444)
N9: (-6.281,99.054,106.756)
O5': (-9.681,101.035,106.364)
O3': (-6.643,103.461,106.064)
Image (generated by PyMOL):