Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A405:A403
Extra
PDB:
ATOM 1 O3' U A 404 -86.375 -33.154 96.411 1.00 85.19 O
ATOM 2 P G A 405 -86.266 -33.337 94.820 1.00 12.75 P
ATOM 3 OP1 G A 405 -87.125 -32.301 94.196 1.00 12.75 O
ATOM 4 OP2 G A 405 -86.549 -34.766 94.514 1.00 12.75 O
ATOM 5 O5' G A 405 -84.723 -33.013 94.543 1.00 12.75 O
ATOM 6 C5' G A 405 -84.332 -31.904 93.741 1.00 12.75 C
ATOM 7 C4' G A 405 -83.025 -32.158 93.008 1.00 12.75 C
ATOM 8 O4' G A 405 -82.116 -32.951 93.831 1.00 12.75 O
ATOM 9 C3' G A 405 -83.108 -32.945 91.706 1.00 12.75 C
ATOM 10 O3' G A 405 -83.568 -32.165 90.616 1.00 12.75 O
ATOM 11 C2' G A 405 -81.675 -33.411 91.547 1.00 12.75 C
ATOM 12 O2' G A 405 -80.849 -32.340 91.119 1.00 12.75 O
ATOM 13 C1' G A 405 -81.318 -33.772 92.998 1.00 12.75 C
ATOM 14 N9 G A 405 -81.649 -35.180 93.277 1.00 12.95 N
ATOM 15 C8 G A 405 -82.677 -35.632 94.055 1.00 12.95 C
ATOM 16 N7 G A 405 -82.787 -36.929 94.056 1.00 12.95 N
ATOM 17 C5 G A 405 -81.789 -37.375 93.205 1.00 12.95 C
ATOM 18 C6 G A 405 -81.442 -38.700 92.813 1.00 12.95 C
ATOM 19 O6 G A 405 -81.964 -39.777 93.145 1.00 12.95 O
ATOM 20 N1 G A 405 -80.372 -38.697 91.941 1.00 12.95 N
ATOM 21 C2 G A 405 -79.729 -37.566 91.520 1.00 12.95 C
ATOM 22 N2 G A 405 -78.710 -37.768 90.670 1.00 12.95 N
ATOM 23 N3 G A 405 -80.045 -36.331 91.874 1.00 12.95 N
ATOM 24 C4 G A 405 -81.082 -36.303 92.716 1.00 12.95 C
ATOM 25 P G A 406 -84.677 -32.739 89.586 1.00 5.04 P
ATOM 26 OP1 G A 406 -85.137 -31.580 88.781 1.00 5.04 O
ATOM 27 OP2 G A 406 -85.684 -33.510 90.385 1.00 5.04 O
ATOM 28 O5' G A 406 -83.829 -33.729 88.664 1.00 5.04 O
TER
ATOM 1 O3' U B 402 -77.774 -32.032 94.769 1.00 18.82 O
ATOM 2 P A B 403 -77.245 -32.176 96.272 1.00 26.95 P
ATOM 3 OP1 A B 403 -77.421 -30.854 96.919 1.00 26.95 O
ATOM 4 OP2 A B 403 -75.882 -32.781 96.215 1.00 26.95 O
ATOM 5 O5' A B 403 -78.272 -33.202 96.877 1.00 26.95 O
ATOM 6 C5' A B 403 -79.646 -33.058 96.604 1.00 26.95 C
ATOM 7 C4' A B 403 -80.407 -34.259 97.060 1.00 26.95 C
ATOM 8 O4' A B 403 -80.318 -35.284 96.027 1.00 26.95 O
ATOM 9 C3' A B 403 -79.884 -34.884 98.357 1.00 26.95 C
ATOM 10 O3' A B 403 -80.920 -34.932 99.377 1.00 26.95 O
ATOM 11 C2' A B 403 -79.373 -36.285 97.943 1.00 26.95 C
ATOM 12 O2' A B 403 -79.615 -37.308 98.882 1.00 26.95 O
ATOM 13 C1' A B 403 -80.104 -36.545 96.620 1.00 26.95 C
ATOM 14 N9 A B 403 -79.377 -37.419 95.666 1.00 26.70 N
ATOM 15 C8 A B 403 -79.745 -38.727 95.366 1.00 26.70 C
ATOM 16 N7 A B 403 -78.987 -39.366 94.509 1.00 26.70 N
ATOM 17 C5 A B 403 -78.041 -38.418 94.213 1.00 26.70 C
ATOM 18 C6 A B 403 -76.960 -38.523 93.361 1.00 26.70 C
ATOM 19 N6 A B 403 -76.715 -39.640 92.685 1.00 26.70 N
ATOM 20 N1 A B 403 -76.170 -37.428 93.258 1.00 26.70 N
ATOM 21 C2 A B 403 -76.469 -36.316 93.976 1.00 26.70 C
ATOM 22 N3 A B 403 -77.476 -36.096 94.828 1.00 26.70 N
ATOM 23 C4 A B 403 -78.241 -37.210 94.898 1.00 26.70 C
ATOM 24 P U B 404 -82.201 -35.909 99.296 1.00 85.19 P
ATOM 25 OP1 U B 404 -82.405 -36.450 100.654 1.00 85.19 O
ATOM 26 OP2 U B 404 -81.985 -36.857 98.193 1.00 85.19 O
ATOM 27 O5' U B 404 -83.401 -34.928 98.930 1.00 85.19 O
TER
ATOM 2 P G A 405 -86.266 -33.337 94.820 1.00 12.75 P
ATOM 3 OP1 G A 405 -87.125 -32.301 94.196 1.00 12.75 O
ATOM 4 OP2 G A 405 -86.549 -34.766 94.514 1.00 12.75 O
ATOM 5 O5' G A 405 -84.723 -33.013 94.543 1.00 12.75 O
ATOM 6 C5' G A 405 -84.332 -31.904 93.741 1.00 12.75 C
ATOM 7 C4' G A 405 -83.025 -32.158 93.008 1.00 12.75 C
ATOM 8 O4' G A 405 -82.116 -32.951 93.831 1.00 12.75 O
ATOM 9 C3' G A 405 -83.108 -32.945 91.706 1.00 12.75 C
ATOM 10 O3' G A 405 -83.568 -32.165 90.616 1.00 12.75 O
ATOM 11 C2' G A 405 -81.675 -33.411 91.547 1.00 12.75 C
ATOM 12 O2' G A 405 -80.849 -32.340 91.119 1.00 12.75 O
ATOM 13 C1' G A 405 -81.318 -33.772 92.998 1.00 12.75 C
ATOM 14 N9 G A 405 -81.649 -35.180 93.277 1.00 12.95 N
ATOM 15 C8 G A 405 -82.677 -35.632 94.055 1.00 12.95 C
ATOM 16 N7 G A 405 -82.787 -36.929 94.056 1.00 12.95 N
ATOM 17 C5 G A 405 -81.789 -37.375 93.205 1.00 12.95 C
ATOM 18 C6 G A 405 -81.442 -38.700 92.813 1.00 12.95 C
ATOM 19 O6 G A 405 -81.964 -39.777 93.145 1.00 12.95 O
ATOM 20 N1 G A 405 -80.372 -38.697 91.941 1.00 12.95 N
ATOM 21 C2 G A 405 -79.729 -37.566 91.520 1.00 12.95 C
ATOM 22 N2 G A 405 -78.710 -37.768 90.670 1.00 12.95 N
ATOM 23 N3 G A 405 -80.045 -36.331 91.874 1.00 12.95 N
ATOM 24 C4 G A 405 -81.082 -36.303 92.716 1.00 12.95 C
ATOM 25 P G A 406 -84.677 -32.739 89.586 1.00 5.04 P
ATOM 26 OP1 G A 406 -85.137 -31.580 88.781 1.00 5.04 O
ATOM 27 OP2 G A 406 -85.684 -33.510 90.385 1.00 5.04 O
ATOM 28 O5' G A 406 -83.829 -33.729 88.664 1.00 5.04 O
TER
ATOM 1 O3' U B 402 -77.774 -32.032 94.769 1.00 18.82 O
ATOM 2 P A B 403 -77.245 -32.176 96.272 1.00 26.95 P
ATOM 3 OP1 A B 403 -77.421 -30.854 96.919 1.00 26.95 O
ATOM 4 OP2 A B 403 -75.882 -32.781 96.215 1.00 26.95 O
ATOM 5 O5' A B 403 -78.272 -33.202 96.877 1.00 26.95 O
ATOM 6 C5' A B 403 -79.646 -33.058 96.604 1.00 26.95 C
ATOM 7 C4' A B 403 -80.407 -34.259 97.060 1.00 26.95 C
ATOM 8 O4' A B 403 -80.318 -35.284 96.027 1.00 26.95 O
ATOM 9 C3' A B 403 -79.884 -34.884 98.357 1.00 26.95 C
ATOM 10 O3' A B 403 -80.920 -34.932 99.377 1.00 26.95 O
ATOM 11 C2' A B 403 -79.373 -36.285 97.943 1.00 26.95 C
ATOM 12 O2' A B 403 -79.615 -37.308 98.882 1.00 26.95 O
ATOM 13 C1' A B 403 -80.104 -36.545 96.620 1.00 26.95 C
ATOM 14 N9 A B 403 -79.377 -37.419 95.666 1.00 26.70 N
ATOM 15 C8 A B 403 -79.745 -38.727 95.366 1.00 26.70 C
ATOM 16 N7 A B 403 -78.987 -39.366 94.509 1.00 26.70 N
ATOM 17 C5 A B 403 -78.041 -38.418 94.213 1.00 26.70 C
ATOM 18 C6 A B 403 -76.960 -38.523 93.361 1.00 26.70 C
ATOM 19 N6 A B 403 -76.715 -39.640 92.685 1.00 26.70 N
ATOM 20 N1 A B 403 -76.170 -37.428 93.258 1.00 26.70 N
ATOM 21 C2 A B 403 -76.469 -36.316 93.976 1.00 26.70 C
ATOM 22 N3 A B 403 -77.476 -36.096 94.828 1.00 26.70 N
ATOM 23 C4 A B 403 -78.241 -37.210 94.898 1.00 26.70 C
ATOM 24 P U B 404 -82.201 -35.909 99.296 1.00 85.19 P
ATOM 25 OP1 U B 404 -82.405 -36.450 100.654 1.00 85.19 O
ATOM 26 OP2 U B 404 -81.985 -36.857 98.193 1.00 85.19 O
ATOM 27 O5' U B 404 -83.401 -34.928 98.930 1.00 85.19 O
TER
Atoms:
OP1: (-87.125,-32.301,94.196)
OP2: (-86.549,-34.766,94.514)
C3': (-83.108,-32.945,91.706)
C1': (-81.318,-33.772,92.998)
C5': (-84.332,-31.904,93.741)
O6: (-81.964,-39.777,93.145)
O4': (-82.116,-32.951,93.831)
C8: (-82.677,-35.632,94.055)
C2: (-79.729,-37.566,91.520)
C6: (-81.442,-38.700,92.813)
C5: (-81.789,-37.375,93.205)
C4: (-81.082,-36.303,92.716)
P: (-86.266,-33.337,94.820)
C4': (-83.025,-32.158,93.008)
C2': (-81.675,-33.411,91.547)
O2': (-80.849,-32.340,91.119)
N1: (-80.372,-38.697,91.941)
N2: (-78.710,-37.768,90.670)
N3: (-80.045,-36.331,91.874)
N7: (-82.787,-36.929,94.056)
N9: (-81.649,-35.180,93.277)
O5': (-84.723,-33.013,94.543)
O3': (-83.568,-32.165,90.616)
OP2: (-86.549,-34.766,94.514)
C3': (-83.108,-32.945,91.706)
C1': (-81.318,-33.772,92.998)
C5': (-84.332,-31.904,93.741)
O6: (-81.964,-39.777,93.145)
O4': (-82.116,-32.951,93.831)
C8: (-82.677,-35.632,94.055)
C2: (-79.729,-37.566,91.520)
C6: (-81.442,-38.700,92.813)
C5: (-81.789,-37.375,93.205)
C4: (-81.082,-36.303,92.716)
P: (-86.266,-33.337,94.820)
C4': (-83.025,-32.158,93.008)
C2': (-81.675,-33.411,91.547)
O2': (-80.849,-32.340,91.119)
N1: (-80.372,-38.697,91.941)
N2: (-78.710,-37.768,90.670)
N3: (-80.045,-36.331,91.874)
N7: (-82.787,-36.929,94.056)
N9: (-81.649,-35.180,93.277)
O5': (-84.723,-33.013,94.543)
O3': (-83.568,-32.165,90.616)
OP1: (-77.421,-30.854,96.919)
OP2: (-75.882,-32.781,96.215)
C3': (-79.884,-34.884,98.357)
C1': (-80.104,-36.545,96.620)
C5': (-79.646,-33.058,96.604)
O4': (-80.318,-35.284,96.027)
C8: (-79.745,-38.727,95.366)
O2': (-79.615,-37.308,98.882)
C6: (-76.960,-38.523,93.361)
C5: (-78.041,-38.418,94.213)
C4: (-78.241,-37.210,94.898)
P: (-77.245,-32.176,96.272)
C4': (-80.407,-34.259,97.060)
C2': (-79.373,-36.285,97.943)
C2: (-76.469,-36.316,93.976)
N1: (-76.170,-37.428,93.258)
N3: (-77.476,-36.096,94.828)
N6: (-76.715,-39.640,92.685)
N7: (-78.987,-39.366,94.509)
N9: (-79.377,-37.419,95.666)
O5': (-78.272,-33.202,96.877)
O3': (-80.920,-34.932,99.377)
OP2: (-75.882,-32.781,96.215)
C3': (-79.884,-34.884,98.357)
C1': (-80.104,-36.545,96.620)
C5': (-79.646,-33.058,96.604)
O4': (-80.318,-35.284,96.027)
C8: (-79.745,-38.727,95.366)
O2': (-79.615,-37.308,98.882)
C6: (-76.960,-38.523,93.361)
C5: (-78.041,-38.418,94.213)
C4: (-78.241,-37.210,94.898)
P: (-77.245,-32.176,96.272)
C4': (-80.407,-34.259,97.060)
C2': (-79.373,-36.285,97.943)
C2: (-76.469,-36.316,93.976)
N1: (-76.170,-37.428,93.258)
N3: (-77.476,-36.096,94.828)
N6: (-76.715,-39.640,92.685)
N7: (-78.987,-39.366,94.509)
N9: (-79.377,-37.419,95.666)
O5': (-78.272,-33.202,96.877)
O3': (-80.920,-34.932,99.377)
Image (generated by PyMOL):