Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0562:0561
Extra
PDB:
ATOM 1 O3' A A 561 -13.205 88.828 129.431 1.00 90.19 O
ATOM 2 P G A 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 3 OP1 G A 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 4 OP2 G A 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 5 O5' G A 562 -11.484 87.106 130.117 1.00 88.58 O
ATOM 6 C5' G A 562 -12.225 85.909 129.827 1.00 87.75 C
ATOM 7 C4' G A 562 -11.347 84.881 129.154 1.00 87.44 C
ATOM 8 O4' G A 562 -10.910 85.375 127.858 1.00 87.34 O
ATOM 9 C3' G A 562 -10.040 84.541 129.847 1.00 87.27 C
ATOM 10 O3' G A 562 -10.171 83.687 130.968 1.00 88.14 O
ATOM 11 C2' G A 562 -9.249 83.920 128.709 1.00 86.72 C
ATOM 12 O2' G A 562 -9.659 82.607 128.386 1.00 84.56 O
ATOM 13 C1' G A 562 -9.602 84.884 127.577 1.00 87.19 C
ATOM 14 N9 G A 562 -8.664 86.008 127.595 1.00 87.63 N
ATOM 15 C8 G A 562 -8.840 87.240 128.187 1.00 87.19 C
ATOM 16 N7 G A 562 -7.791 88.012 128.086 1.00 86.35 N
ATOM 17 C5 G A 562 -6.873 87.252 127.371 1.00 86.88 C
ATOM 18 C6 G A 562 -5.551 87.557 126.956 1.00 86.83 C
ATOM 19 O6 G A 562 -4.905 88.598 127.140 1.00 87.72 O
ATOM 20 N1 G A 562 -4.978 86.498 126.260 1.00 85.05 N
ATOM 21 C2 G A 562 -5.593 85.304 125.994 1.00 84.77 C
ATOM 22 N2 G A 562 -4.876 84.408 125.312 1.00 85.26 N
ATOM 23 N3 G A 562 -6.822 85.008 126.368 1.00 85.65 N
ATOM 24 C4 G A 562 -7.399 86.019 127.050 1.00 86.76 C
ATOM 25 P A A 563 -9.172 83.874 132.213 1.00 88.26 P
ATOM 26 OP1 A A 563 -9.684 83.045 133.329 1.00 89.79 O
ATOM 27 OP2 A A 563 -8.952 85.332 132.424 1.00 87.66 O
ATOM 28 O5' A A 563 -7.812 83.225 131.700 1.00 86.79 O
TER
ATOM 1 O3' G B 560 -12.743 94.742 127.728 1.00 88.76 O
ATOM 2 P A B 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 3 OP1 A B 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 4 OP2 A B 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 5 O5' A B 561 -12.394 92.279 128.155 1.00 89.02 O
ATOM 6 C5' A B 561 -13.703 91.699 128.028 1.00 87.84 C
ATOM 7 C4' A B 561 -13.597 90.296 127.494 1.00 88.23 C
ATOM 8 O4' A B 561 -13.034 90.346 126.156 1.00 89.63 O
ATOM 9 C3' A B 561 -12.645 89.379 128.245 1.00 89.19 C
ATOM 10 O3' A B 561 -13.205 88.828 129.431 1.00 90.19 O
ATOM 11 C2' A B 561 -12.309 88.335 127.188 1.00 89.43 C
ATOM 12 O2' A B 561 -13.312 87.354 126.995 1.00 88.28 O
ATOM 13 C1' A B 561 -12.193 89.217 125.943 1.00 89.47 C
ATOM 14 N9 A B 561 -10.815 89.687 125.761 1.00 89.08 N
ATOM 15 C8 A B 561 -10.259 90.873 126.187 1.00 88.50 C
ATOM 16 N7 A B 561 -8.981 90.983 125.920 1.00 87.50 N
ATOM 17 C5 A B 561 -8.673 89.799 125.263 1.00 87.17 C
ATOM 18 C6 A B 561 -7.474 89.302 124.724 1.00 86.62 C
ATOM 19 N6 A B 561 -6.315 89.962 124.763 1.00 85.70 N
ATOM 20 N1 A B 561 -7.505 88.087 124.137 1.00 86.99 N
ATOM 21 C2 A B 561 -8.669 87.423 124.097 1.00 87.43 C
ATOM 22 N3 A B 561 -9.862 87.785 124.567 1.00 87.74 N
ATOM 23 C4 A B 561 -9.795 88.997 125.147 1.00 87.93 C
ATOM 24 P G B 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 25 OP1 G B 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 26 OP2 G B 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 27 O5' G B 562 -11.484 87.106 130.117 1.00 88.58 O
TER
ATOM 2 P G A 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 3 OP1 G A 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 4 OP2 G A 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 5 O5' G A 562 -11.484 87.106 130.117 1.00 88.58 O
ATOM 6 C5' G A 562 -12.225 85.909 129.827 1.00 87.75 C
ATOM 7 C4' G A 562 -11.347 84.881 129.154 1.00 87.44 C
ATOM 8 O4' G A 562 -10.910 85.375 127.858 1.00 87.34 O
ATOM 9 C3' G A 562 -10.040 84.541 129.847 1.00 87.27 C
ATOM 10 O3' G A 562 -10.171 83.687 130.968 1.00 88.14 O
ATOM 11 C2' G A 562 -9.249 83.920 128.709 1.00 86.72 C
ATOM 12 O2' G A 562 -9.659 82.607 128.386 1.00 84.56 O
ATOM 13 C1' G A 562 -9.602 84.884 127.577 1.00 87.19 C
ATOM 14 N9 G A 562 -8.664 86.008 127.595 1.00 87.63 N
ATOM 15 C8 G A 562 -8.840 87.240 128.187 1.00 87.19 C
ATOM 16 N7 G A 562 -7.791 88.012 128.086 1.00 86.35 N
ATOM 17 C5 G A 562 -6.873 87.252 127.371 1.00 86.88 C
ATOM 18 C6 G A 562 -5.551 87.557 126.956 1.00 86.83 C
ATOM 19 O6 G A 562 -4.905 88.598 127.140 1.00 87.72 O
ATOM 20 N1 G A 562 -4.978 86.498 126.260 1.00 85.05 N
ATOM 21 C2 G A 562 -5.593 85.304 125.994 1.00 84.77 C
ATOM 22 N2 G A 562 -4.876 84.408 125.312 1.00 85.26 N
ATOM 23 N3 G A 562 -6.822 85.008 126.368 1.00 85.65 N
ATOM 24 C4 G A 562 -7.399 86.019 127.050 1.00 86.76 C
ATOM 25 P A A 563 -9.172 83.874 132.213 1.00 88.26 P
ATOM 26 OP1 A A 563 -9.684 83.045 133.329 1.00 89.79 O
ATOM 27 OP2 A A 563 -8.952 85.332 132.424 1.00 87.66 O
ATOM 28 O5' A A 563 -7.812 83.225 131.700 1.00 86.79 O
TER
ATOM 1 O3' G B 560 -12.743 94.742 127.728 1.00 88.76 O
ATOM 2 P A B 561 -12.190 93.711 128.828 1.00 91.07 P
ATOM 3 OP1 A B 561 -13.088 93.826 130.005 1.00 91.55 O
ATOM 4 OP2 A B 561 -10.730 93.940 128.995 1.00 90.46 O
ATOM 5 O5' A B 561 -12.394 92.279 128.155 1.00 89.02 O
ATOM 6 C5' A B 561 -13.703 91.699 128.028 1.00 87.84 C
ATOM 7 C4' A B 561 -13.597 90.296 127.494 1.00 88.23 C
ATOM 8 O4' A B 561 -13.034 90.346 126.156 1.00 89.63 O
ATOM 9 C3' A B 561 -12.645 89.379 128.245 1.00 89.19 C
ATOM 10 O3' A B 561 -13.205 88.828 129.431 1.00 90.19 O
ATOM 11 C2' A B 561 -12.309 88.335 127.188 1.00 89.43 C
ATOM 12 O2' A B 561 -13.312 87.354 126.995 1.00 88.28 O
ATOM 13 C1' A B 561 -12.193 89.217 125.943 1.00 89.47 C
ATOM 14 N9 A B 561 -10.815 89.687 125.761 1.00 89.08 N
ATOM 15 C8 A B 561 -10.259 90.873 126.187 1.00 88.50 C
ATOM 16 N7 A B 561 -8.981 90.983 125.920 1.00 87.50 N
ATOM 17 C5 A B 561 -8.673 89.799 125.263 1.00 87.17 C
ATOM 18 C6 A B 561 -7.474 89.302 124.724 1.00 86.62 C
ATOM 19 N6 A B 561 -6.315 89.962 124.763 1.00 85.70 N
ATOM 20 N1 A B 561 -7.505 88.087 124.137 1.00 86.99 N
ATOM 21 C2 A B 561 -8.669 87.423 124.097 1.00 87.43 C
ATOM 22 N3 A B 561 -9.862 87.785 124.567 1.00 87.74 N
ATOM 23 C4 A B 561 -9.795 88.997 125.147 1.00 87.93 C
ATOM 24 P G B 562 -12.236 88.409 130.649 1.00 91.01 P
ATOM 25 OP1 G B 562 -13.115 88.002 131.772 1.00 91.52 O
ATOM 26 OP2 G B 562 -11.238 89.492 130.859 1.00 90.70 O
ATOM 27 O5' G B 562 -11.484 87.106 130.117 1.00 88.58 O
TER
Atoms:
OP1: (-13.115,88.002,131.772)
OP2: (-11.238,89.492,130.859)
C3': (-10.040,84.541,129.847)
C1': (-9.602,84.884,127.577)
C5': (-12.225,85.909,129.827)
O6: (-4.905,88.598,127.140)
O4': (-10.910,85.375,127.858)
C8: (-8.840,87.240,128.187)
C2: (-5.593,85.304,125.994)
C6: (-5.551,87.557,126.956)
C5: (-6.873,87.252,127.371)
C4: (-7.399,86.019,127.050)
P: (-12.236,88.409,130.649)
C4': (-11.347,84.881,129.154)
C2': (-9.249,83.920,128.709)
O2': (-9.659,82.607,128.386)
N1: (-4.978,86.498,126.260)
N2: (-4.876,84.408,125.312)
N3: (-6.822,85.008,126.368)
N7: (-7.791,88.012,128.086)
N9: (-8.664,86.008,127.595)
O5': (-11.484,87.106,130.117)
O3': (-10.171,83.687,130.968)
OP2: (-11.238,89.492,130.859)
C3': (-10.040,84.541,129.847)
C1': (-9.602,84.884,127.577)
C5': (-12.225,85.909,129.827)
O6: (-4.905,88.598,127.140)
O4': (-10.910,85.375,127.858)
C8: (-8.840,87.240,128.187)
C2: (-5.593,85.304,125.994)
C6: (-5.551,87.557,126.956)
C5: (-6.873,87.252,127.371)
C4: (-7.399,86.019,127.050)
P: (-12.236,88.409,130.649)
C4': (-11.347,84.881,129.154)
C2': (-9.249,83.920,128.709)
O2': (-9.659,82.607,128.386)
N1: (-4.978,86.498,126.260)
N2: (-4.876,84.408,125.312)
N3: (-6.822,85.008,126.368)
N7: (-7.791,88.012,128.086)
N9: (-8.664,86.008,127.595)
O5': (-11.484,87.106,130.117)
O3': (-10.171,83.687,130.968)
OP1: (-13.088,93.826,130.005)
OP2: (-10.730,93.940,128.995)
C3': (-12.645,89.379,128.245)
C1': (-12.193,89.217,125.943)
C5': (-13.703,91.699,128.028)
O4': (-13.034,90.346,126.156)
C8: (-10.259,90.873,126.187)
O2': (-13.312,87.354,126.995)
C6: (-7.474,89.302,124.724)
C5: (-8.673,89.799,125.263)
C4: (-9.795,88.997,125.147)
P: (-12.190,93.711,128.828)
C4': (-13.597,90.296,127.494)
C2': (-12.309,88.335,127.188)
C2: (-8.669,87.423,124.097)
N1: (-7.505,88.087,124.137)
N3: (-9.862,87.785,124.567)
N6: (-6.315,89.962,124.763)
N7: (-8.981,90.983,125.920)
N9: (-10.815,89.687,125.761)
O5': (-12.394,92.279,128.155)
O3': (-13.205,88.828,129.431)
OP2: (-10.730,93.940,128.995)
C3': (-12.645,89.379,128.245)
C1': (-12.193,89.217,125.943)
C5': (-13.703,91.699,128.028)
O4': (-13.034,90.346,126.156)
C8: (-10.259,90.873,126.187)
O2': (-13.312,87.354,126.995)
C6: (-7.474,89.302,124.724)
C5: (-8.673,89.799,125.263)
C4: (-9.795,88.997,125.147)
P: (-12.190,93.711,128.828)
C4': (-13.597,90.296,127.494)
C2': (-12.309,88.335,127.188)
C2: (-8.669,87.423,124.097)
N1: (-7.505,88.087,124.137)
N3: (-9.862,87.785,124.567)
N6: (-6.315,89.962,124.763)
N7: (-8.981,90.983,125.920)
N9: (-10.815,89.687,125.761)
O5': (-12.394,92.279,128.155)
O3': (-13.205,88.828,129.431)
Image (generated by PyMOL):