Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0428:0429
Extra
PDB:
ATOM 1 O3' A A 427 56.681 116.280 35.211 1.00 42.37 O
ATOM 2 P C A 428 55.446 117.204 35.661 1.00 43.69 P
ATOM 3 OP1 C A 428 55.100 116.838 37.056 1.00 43.40 O
ATOM 4 OP2 C A 428 54.405 117.145 34.609 1.00 44.05 O
ATOM 5 O5' C A 428 56.038 118.682 35.674 1.00 44.82 O
ATOM 6 C5' C A 428 57.082 119.058 36.595 1.00 47.15 C
ATOM 7 C4' C A 428 57.499 120.483 36.346 1.00 49.05 C
ATOM 8 O4' C A 428 57.959 120.592 34.980 1.00 49.86 O
ATOM 9 C3' C A 428 56.389 121.519 36.479 1.00 49.44 C
ATOM 10 O3' C A 428 56.343 121.985 37.824 1.00 50.79 O
ATOM 11 C2' C A 428 56.849 122.633 35.551 1.00 49.92 C
ATOM 12 O2' C A 428 57.757 123.515 36.180 1.00 48.90 O
ATOM 13 C1' C A 428 57.568 121.843 34.451 1.00 50.43 C
ATOM 14 N1 C A 428 56.775 121.596 33.246 1.00 50.18 N
ATOM 15 C2 C A 428 56.814 122.529 32.214 1.00 51.67 C
ATOM 16 O2 C A 428 57.492 123.556 32.354 1.00 52.14 O
ATOM 17 N3 C A 428 56.116 122.293 31.087 1.00 53.41 N
ATOM 18 C4 C A 428 55.399 121.177 30.972 1.00 53.97 C
ATOM 19 N4 C A 428 54.737 120.977 29.835 1.00 56.30 N
ATOM 20 C5 C A 428 55.331 120.215 32.016 1.00 53.56 C
ATOM 21 C6 C A 428 56.025 120.464 33.125 1.00 51.39 C
ATOM 22 P A A 429 54.947 122.404 38.487 1.00 51.66 P
ATOM 23 OP1 A A 429 55.185 122.566 39.943 1.00 52.12 O
ATOM 24 OP2 A A 429 53.905 121.465 38.012 1.00 53.05 O
ATOM 25 O5' A A 429 54.648 123.843 37.890 1.00 53.48 O
TER
ATOM 1 O3' C B 428 56.343 121.985 37.824 1.00 50.79 O
ATOM 2 P A B 429 54.947 122.404 38.487 1.00 51.66 P
ATOM 3 OP1 A B 429 55.185 122.566 39.943 1.00 52.12 O
ATOM 4 OP2 A B 429 53.905 121.465 38.012 1.00 53.05 O
ATOM 5 O5' A B 429 54.648 123.843 37.890 1.00 53.48 O
ATOM 6 C5' A B 429 55.607 124.904 38.018 1.00 55.53 C
ATOM 7 C4' A B 429 55.246 126.028 37.088 1.00 56.15 C
ATOM 8 O4' A B 429 55.216 125.493 35.739 1.00 57.51 O
ATOM 9 C3' A B 429 53.874 126.644 37.327 1.00 56.70 C
ATOM 10 O3' A B 429 53.890 128.020 36.991 1.00 56.07 O
ATOM 11 C2' A B 429 52.974 125.858 36.382 1.00 56.94 C
ATOM 12 O2' A B 429 51.864 126.602 35.932 1.00 58.77 O
ATOM 13 C1' A B 429 53.907 125.573 35.213 1.00 57.66 C
ATOM 14 N9 A B 429 53.591 124.286 34.599 1.00 60.31 N
ATOM 15 C8 A B 429 53.604 123.042 35.190 1.00 61.21 C
ATOM 16 N7 A B 429 53.239 122.071 34.391 1.00 61.84 N
ATOM 17 C5 A B 429 52.969 122.715 33.190 1.00 62.37 C
ATOM 18 C6 A B 429 52.523 122.244 31.948 1.00 61.81 C
ATOM 19 N6 A B 429 52.250 120.961 31.700 1.00 62.08 N
ATOM 20 N1 A B 429 52.361 123.145 30.955 1.00 61.63 N
ATOM 21 C2 A B 429 52.632 124.430 31.205 1.00 61.57 C
ATOM 22 N3 A B 429 53.052 124.999 32.331 1.00 62.44 N
ATOM 23 C4 A B 429 53.199 124.077 33.300 1.00 62.18 C
ATOM 24 P A B 430 53.263 129.087 38.008 1.00 55.47 P
ATOM 25 OP1 A B 430 53.925 128.889 39.324 1.00 55.90 O
ATOM 26 OP2 A B 430 51.792 129.008 37.914 1.00 55.86 O
ATOM 27 O5' A B 430 53.701 130.486 37.394 1.00 55.78 O
TER
ATOM 2 P C A 428 55.446 117.204 35.661 1.00 43.69 P
ATOM 3 OP1 C A 428 55.100 116.838 37.056 1.00 43.40 O
ATOM 4 OP2 C A 428 54.405 117.145 34.609 1.00 44.05 O
ATOM 5 O5' C A 428 56.038 118.682 35.674 1.00 44.82 O
ATOM 6 C5' C A 428 57.082 119.058 36.595 1.00 47.15 C
ATOM 7 C4' C A 428 57.499 120.483 36.346 1.00 49.05 C
ATOM 8 O4' C A 428 57.959 120.592 34.980 1.00 49.86 O
ATOM 9 C3' C A 428 56.389 121.519 36.479 1.00 49.44 C
ATOM 10 O3' C A 428 56.343 121.985 37.824 1.00 50.79 O
ATOM 11 C2' C A 428 56.849 122.633 35.551 1.00 49.92 C
ATOM 12 O2' C A 428 57.757 123.515 36.180 1.00 48.90 O
ATOM 13 C1' C A 428 57.568 121.843 34.451 1.00 50.43 C
ATOM 14 N1 C A 428 56.775 121.596 33.246 1.00 50.18 N
ATOM 15 C2 C A 428 56.814 122.529 32.214 1.00 51.67 C
ATOM 16 O2 C A 428 57.492 123.556 32.354 1.00 52.14 O
ATOM 17 N3 C A 428 56.116 122.293 31.087 1.00 53.41 N
ATOM 18 C4 C A 428 55.399 121.177 30.972 1.00 53.97 C
ATOM 19 N4 C A 428 54.737 120.977 29.835 1.00 56.30 N
ATOM 20 C5 C A 428 55.331 120.215 32.016 1.00 53.56 C
ATOM 21 C6 C A 428 56.025 120.464 33.125 1.00 51.39 C
ATOM 22 P A A 429 54.947 122.404 38.487 1.00 51.66 P
ATOM 23 OP1 A A 429 55.185 122.566 39.943 1.00 52.12 O
ATOM 24 OP2 A A 429 53.905 121.465 38.012 1.00 53.05 O
ATOM 25 O5' A A 429 54.648 123.843 37.890 1.00 53.48 O
TER
ATOM 1 O3' C B 428 56.343 121.985 37.824 1.00 50.79 O
ATOM 2 P A B 429 54.947 122.404 38.487 1.00 51.66 P
ATOM 3 OP1 A B 429 55.185 122.566 39.943 1.00 52.12 O
ATOM 4 OP2 A B 429 53.905 121.465 38.012 1.00 53.05 O
ATOM 5 O5' A B 429 54.648 123.843 37.890 1.00 53.48 O
ATOM 6 C5' A B 429 55.607 124.904 38.018 1.00 55.53 C
ATOM 7 C4' A B 429 55.246 126.028 37.088 1.00 56.15 C
ATOM 8 O4' A B 429 55.216 125.493 35.739 1.00 57.51 O
ATOM 9 C3' A B 429 53.874 126.644 37.327 1.00 56.70 C
ATOM 10 O3' A B 429 53.890 128.020 36.991 1.00 56.07 O
ATOM 11 C2' A B 429 52.974 125.858 36.382 1.00 56.94 C
ATOM 12 O2' A B 429 51.864 126.602 35.932 1.00 58.77 O
ATOM 13 C1' A B 429 53.907 125.573 35.213 1.00 57.66 C
ATOM 14 N9 A B 429 53.591 124.286 34.599 1.00 60.31 N
ATOM 15 C8 A B 429 53.604 123.042 35.190 1.00 61.21 C
ATOM 16 N7 A B 429 53.239 122.071 34.391 1.00 61.84 N
ATOM 17 C5 A B 429 52.969 122.715 33.190 1.00 62.37 C
ATOM 18 C6 A B 429 52.523 122.244 31.948 1.00 61.81 C
ATOM 19 N6 A B 429 52.250 120.961 31.700 1.00 62.08 N
ATOM 20 N1 A B 429 52.361 123.145 30.955 1.00 61.63 N
ATOM 21 C2 A B 429 52.632 124.430 31.205 1.00 61.57 C
ATOM 22 N3 A B 429 53.052 124.999 32.331 1.00 62.44 N
ATOM 23 C4 A B 429 53.199 124.077 33.300 1.00 62.18 C
ATOM 24 P A B 430 53.263 129.087 38.008 1.00 55.47 P
ATOM 25 OP1 A B 430 53.925 128.889 39.324 1.00 55.90 O
ATOM 26 OP2 A B 430 51.792 129.008 37.914 1.00 55.86 O
ATOM 27 O5' A B 430 53.701 130.486 37.394 1.00 55.78 O
TER
Atoms:
C2: (56.814,122.529,32.214)
OP1: (55.100,116.838,37.056)
OP2: (54.405,117.145,34.609)
C4: (55.399,121.177,30.972)
O5': (56.038,118.682,35.674)
C3': (56.389,121.519,36.479)
C1': (57.568,121.843,34.451)
O4': (57.959,120.592,34.980)
C5': (57.082,119.058,36.595)
P: (55.446,117.204,35.661)
O2: (57.492,123.556,32.354)
C4': (57.499,120.483,36.346)
C2': (56.849,122.633,35.551)
O2': (57.757,123.515,36.180)
N1: (56.775,121.596,33.246)
N3: (56.116,122.293,31.087)
N4: (54.737,120.977,29.835)
C6: (56.025,120.464,33.125)
C5: (55.331,120.215,32.016)
O3': (56.343,121.985,37.824)
OP1: (55.100,116.838,37.056)
OP2: (54.405,117.145,34.609)
C4: (55.399,121.177,30.972)
O5': (56.038,118.682,35.674)
C3': (56.389,121.519,36.479)
C1': (57.568,121.843,34.451)
O4': (57.959,120.592,34.980)
C5': (57.082,119.058,36.595)
P: (55.446,117.204,35.661)
O2: (57.492,123.556,32.354)
C4': (57.499,120.483,36.346)
C2': (56.849,122.633,35.551)
O2': (57.757,123.515,36.180)
N1: (56.775,121.596,33.246)
N3: (56.116,122.293,31.087)
N4: (54.737,120.977,29.835)
C6: (56.025,120.464,33.125)
C5: (55.331,120.215,32.016)
O3': (56.343,121.985,37.824)
OP1: (55.185,122.566,39.943)
OP2: (53.905,121.465,38.012)
C3': (53.874,126.644,37.327)
C1': (53.907,125.573,35.213)
C5': (55.607,124.904,38.018)
O4': (55.216,125.493,35.739)
C8: (53.604,123.042,35.190)
O2': (51.864,126.602,35.932)
C6: (52.523,122.244,31.948)
C5: (52.969,122.715,33.190)
C4: (53.199,124.077,33.300)
P: (54.947,122.404,38.487)
C4': (55.246,126.028,37.088)
C2': (52.974,125.858,36.382)
C2: (52.632,124.430,31.205)
N1: (52.361,123.145,30.955)
N3: (53.052,124.999,32.331)
N6: (52.250,120.961,31.700)
N7: (53.239,122.071,34.391)
N9: (53.591,124.286,34.599)
O5': (54.648,123.843,37.890)
O3': (53.890,128.020,36.991)
OP2: (53.905,121.465,38.012)
C3': (53.874,126.644,37.327)
C1': (53.907,125.573,35.213)
C5': (55.607,124.904,38.018)
O4': (55.216,125.493,35.739)
C8: (53.604,123.042,35.190)
O2': (51.864,126.602,35.932)
C6: (52.523,122.244,31.948)
C5: (52.969,122.715,33.190)
C4: (53.199,124.077,33.300)
P: (54.947,122.404,38.487)
C4': (55.246,126.028,37.088)
C2': (52.974,125.858,36.382)
C2: (52.632,124.430,31.205)
N1: (52.361,123.145,30.955)
N3: (53.052,124.999,32.331)
N6: (52.250,120.961,31.700)
N7: (53.239,122.071,34.391)
N9: (53.591,124.286,34.599)
O5': (54.648,123.843,37.890)
O3': (53.890,128.020,36.991)
Image (generated by PyMOL):