Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0538:0539
Extra
PDB:
ATOM 1 O3' A A 537 0.153 136.689 82.482 1.00 60.68 O
ATOM 2 P C A 538 0.421 135.257 81.817 1.00 60.79 P
ATOM 3 OP1 C A 538 -0.492 134.281 82.462 1.00 61.42 O
ATOM 4 OP2 C A 538 1.889 135.020 81.839 1.00 60.14 O
ATOM 5 O5' C A 538 -0.021 135.443 80.297 1.00 59.99 O
ATOM 6 C5' C A 538 -1.363 135.828 79.951 1.00 57.71 C
ATOM 7 C4' C A 538 -1.450 136.129 78.472 1.00 57.02 C
ATOM 8 O4' C A 538 -0.524 137.195 78.144 1.00 57.84 O
ATOM 9 C3' C A 538 -1.044 134.993 77.551 1.00 55.64 C
ATOM 10 O3' C A 538 -2.131 134.108 77.348 1.00 53.85 O
ATOM 11 C2' C A 538 -0.637 135.720 76.275 1.00 55.96 C
ATOM 12 O2' C A 538 -1.726 136.106 75.462 1.00 56.37 O
ATOM 13 C1' C A 538 0.002 136.987 76.842 1.00 57.02 C
ATOM 14 N1 C A 538 1.471 136.956 76.927 1.00 58.02 N
ATOM 15 C2 C A 538 2.218 137.335 75.805 1.00 58.61 C
ATOM 16 O2 C A 538 1.623 137.626 74.753 1.00 59.32 O
ATOM 17 N3 C A 538 3.568 137.369 75.892 1.00 58.57 N
ATOM 18 C4 C A 538 4.171 137.029 77.034 1.00 59.81 C
ATOM 19 N4 C A 538 5.506 137.104 77.086 1.00 60.84 N
ATOM 20 C5 C A 538 3.434 136.606 78.179 1.00 60.19 C
ATOM 21 C6 C A 538 2.101 136.585 78.083 1.00 58.79 C
ATOM 22 P A A 539 -1.874 132.528 77.350 1.00 54.33 P
ATOM 23 OP1 A A 539 -3.177 131.864 77.114 1.00 55.36 O
ATOM 24 OP2 A A 539 -1.093 132.199 78.571 1.00 53.27 O
ATOM 25 O5' A A 539 -0.965 132.282 76.064 1.00 52.45 O
TER
ATOM 1 O3' C B 538 -2.131 134.108 77.348 1.00 53.85 O
ATOM 2 P A B 539 -1.874 132.528 77.350 1.00 54.33 P
ATOM 3 OP1 A B 539 -3.177 131.864 77.114 1.00 55.36 O
ATOM 4 OP2 A B 539 -1.093 132.199 78.571 1.00 53.27 O
ATOM 5 O5' A B 539 -0.965 132.282 76.064 1.00 52.45 O
ATOM 6 C5' A B 539 -1.468 132.539 74.737 1.00 50.74 C
ATOM 7 C4' A B 539 -0.339 132.500 73.735 1.00 50.70 C
ATOM 8 O4' A B 539 0.625 133.526 74.075 1.00 51.56 O
ATOM 9 C3' A B 539 0.454 131.203 73.711 1.00 49.80 C
ATOM 10 O3' A B 539 -0.153 130.282 72.812 1.00 48.00 O
ATOM 11 C2' A B 539 1.828 131.652 73.227 1.00 49.92 C
ATOM 12 O2' A B 539 1.882 131.816 71.828 1.00 48.19 O
ATOM 13 C1' A B 539 1.939 133.036 73.870 1.00 51.46 C
ATOM 14 N9 A B 539 2.646 133.112 75.150 1.00 52.43 N
ATOM 15 C8 A B 539 2.110 132.987 76.412 1.00 53.62 C
ATOM 16 N7 A B 539 2.971 133.199 77.378 1.00 53.40 N
ATOM 17 C5 A B 539 4.159 133.460 76.710 1.00 52.77 C
ATOM 18 C6 A B 539 5.442 133.780 77.170 1.00 52.37 C
ATOM 19 N6 A B 539 5.749 133.905 78.466 1.00 52.95 N
ATOM 20 N1 A B 539 6.410 133.978 76.244 1.00 51.70 N
ATOM 21 C2 A B 539 6.092 133.861 74.945 1.00 50.76 C
ATOM 22 N3 A B 539 4.919 133.572 74.389 1.00 50.98 N
ATOM 23 C4 A B 539 3.981 133.383 75.337 1.00 52.39 C
ATOM 24 P A B 540 -0.813 128.931 73.373 1.00 48.26 P
ATOM 25 OP1 A B 540 -1.909 128.548 72.447 1.00 47.56 O
ATOM 26 OP2 A B 540 -1.102 129.107 74.822 1.00 48.47 O
ATOM 27 O5' A B 540 0.343 127.853 73.214 1.00 45.73 O
TER
ATOM 2 P C A 538 0.421 135.257 81.817 1.00 60.79 P
ATOM 3 OP1 C A 538 -0.492 134.281 82.462 1.00 61.42 O
ATOM 4 OP2 C A 538 1.889 135.020 81.839 1.00 60.14 O
ATOM 5 O5' C A 538 -0.021 135.443 80.297 1.00 59.99 O
ATOM 6 C5' C A 538 -1.363 135.828 79.951 1.00 57.71 C
ATOM 7 C4' C A 538 -1.450 136.129 78.472 1.00 57.02 C
ATOM 8 O4' C A 538 -0.524 137.195 78.144 1.00 57.84 O
ATOM 9 C3' C A 538 -1.044 134.993 77.551 1.00 55.64 C
ATOM 10 O3' C A 538 -2.131 134.108 77.348 1.00 53.85 O
ATOM 11 C2' C A 538 -0.637 135.720 76.275 1.00 55.96 C
ATOM 12 O2' C A 538 -1.726 136.106 75.462 1.00 56.37 O
ATOM 13 C1' C A 538 0.002 136.987 76.842 1.00 57.02 C
ATOM 14 N1 C A 538 1.471 136.956 76.927 1.00 58.02 N
ATOM 15 C2 C A 538 2.218 137.335 75.805 1.00 58.61 C
ATOM 16 O2 C A 538 1.623 137.626 74.753 1.00 59.32 O
ATOM 17 N3 C A 538 3.568 137.369 75.892 1.00 58.57 N
ATOM 18 C4 C A 538 4.171 137.029 77.034 1.00 59.81 C
ATOM 19 N4 C A 538 5.506 137.104 77.086 1.00 60.84 N
ATOM 20 C5 C A 538 3.434 136.606 78.179 1.00 60.19 C
ATOM 21 C6 C A 538 2.101 136.585 78.083 1.00 58.79 C
ATOM 22 P A A 539 -1.874 132.528 77.350 1.00 54.33 P
ATOM 23 OP1 A A 539 -3.177 131.864 77.114 1.00 55.36 O
ATOM 24 OP2 A A 539 -1.093 132.199 78.571 1.00 53.27 O
ATOM 25 O5' A A 539 -0.965 132.282 76.064 1.00 52.45 O
TER
ATOM 1 O3' C B 538 -2.131 134.108 77.348 1.00 53.85 O
ATOM 2 P A B 539 -1.874 132.528 77.350 1.00 54.33 P
ATOM 3 OP1 A B 539 -3.177 131.864 77.114 1.00 55.36 O
ATOM 4 OP2 A B 539 -1.093 132.199 78.571 1.00 53.27 O
ATOM 5 O5' A B 539 -0.965 132.282 76.064 1.00 52.45 O
ATOM 6 C5' A B 539 -1.468 132.539 74.737 1.00 50.74 C
ATOM 7 C4' A B 539 -0.339 132.500 73.735 1.00 50.70 C
ATOM 8 O4' A B 539 0.625 133.526 74.075 1.00 51.56 O
ATOM 9 C3' A B 539 0.454 131.203 73.711 1.00 49.80 C
ATOM 10 O3' A B 539 -0.153 130.282 72.812 1.00 48.00 O
ATOM 11 C2' A B 539 1.828 131.652 73.227 1.00 49.92 C
ATOM 12 O2' A B 539 1.882 131.816 71.828 1.00 48.19 O
ATOM 13 C1' A B 539 1.939 133.036 73.870 1.00 51.46 C
ATOM 14 N9 A B 539 2.646 133.112 75.150 1.00 52.43 N
ATOM 15 C8 A B 539 2.110 132.987 76.412 1.00 53.62 C
ATOM 16 N7 A B 539 2.971 133.199 77.378 1.00 53.40 N
ATOM 17 C5 A B 539 4.159 133.460 76.710 1.00 52.77 C
ATOM 18 C6 A B 539 5.442 133.780 77.170 1.00 52.37 C
ATOM 19 N6 A B 539 5.749 133.905 78.466 1.00 52.95 N
ATOM 20 N1 A B 539 6.410 133.978 76.244 1.00 51.70 N
ATOM 21 C2 A B 539 6.092 133.861 74.945 1.00 50.76 C
ATOM 22 N3 A B 539 4.919 133.572 74.389 1.00 50.98 N
ATOM 23 C4 A B 539 3.981 133.383 75.337 1.00 52.39 C
ATOM 24 P A B 540 -0.813 128.931 73.373 1.00 48.26 P
ATOM 25 OP1 A B 540 -1.909 128.548 72.447 1.00 47.56 O
ATOM 26 OP2 A B 540 -1.102 129.107 74.822 1.00 48.47 O
ATOM 27 O5' A B 540 0.343 127.853 73.214 1.00 45.73 O
TER
Atoms:
C2: (2.218,137.335,75.805)
OP1: (-0.492,134.281,82.462)
OP2: (1.889,135.020,81.839)
C4: (4.171,137.029,77.034)
O5': (-0.021,135.443,80.297)
C3': (-1.044,134.993,77.551)
C1': (0.002,136.987,76.842)
O4': (-0.524,137.195,78.144)
C5': (-1.363,135.828,79.951)
P: (0.421,135.257,81.817)
O2: (1.623,137.626,74.753)
C4': (-1.450,136.129,78.472)
C2': (-0.637,135.720,76.275)
O2': (-1.726,136.106,75.462)
N1: (1.471,136.956,76.927)
N3: (3.568,137.369,75.892)
N4: (5.506,137.104,77.086)
C6: (2.101,136.585,78.083)
C5: (3.434,136.606,78.179)
O3': (-2.131,134.108,77.348)
OP1: (-0.492,134.281,82.462)
OP2: (1.889,135.020,81.839)
C4: (4.171,137.029,77.034)
O5': (-0.021,135.443,80.297)
C3': (-1.044,134.993,77.551)
C1': (0.002,136.987,76.842)
O4': (-0.524,137.195,78.144)
C5': (-1.363,135.828,79.951)
P: (0.421,135.257,81.817)
O2: (1.623,137.626,74.753)
C4': (-1.450,136.129,78.472)
C2': (-0.637,135.720,76.275)
O2': (-1.726,136.106,75.462)
N1: (1.471,136.956,76.927)
N3: (3.568,137.369,75.892)
N4: (5.506,137.104,77.086)
C6: (2.101,136.585,78.083)
C5: (3.434,136.606,78.179)
O3': (-2.131,134.108,77.348)
OP1: (-3.177,131.864,77.114)
OP2: (-1.093,132.199,78.571)
C3': (0.454,131.203,73.711)
C1': (1.939,133.036,73.870)
C5': (-1.468,132.539,74.737)
O4': (0.625,133.526,74.075)
C8: (2.110,132.987,76.412)
O2': (1.882,131.816,71.828)
C6: (5.442,133.780,77.170)
C5: (4.159,133.460,76.710)
C4: (3.981,133.383,75.337)
P: (-1.874,132.528,77.350)
C4': (-0.339,132.500,73.735)
C2': (1.828,131.652,73.227)
C2: (6.092,133.861,74.945)
N1: (6.410,133.978,76.244)
N3: (4.919,133.572,74.389)
N6: (5.749,133.905,78.466)
N7: (2.971,133.199,77.378)
N9: (2.646,133.112,75.150)
O5': (-0.965,132.282,76.064)
O3': (-0.153,130.282,72.812)
OP2: (-1.093,132.199,78.571)
C3': (0.454,131.203,73.711)
C1': (1.939,133.036,73.870)
C5': (-1.468,132.539,74.737)
O4': (0.625,133.526,74.075)
C8: (2.110,132.987,76.412)
O2': (1.882,131.816,71.828)
C6: (5.442,133.780,77.170)
C5: (4.159,133.460,76.710)
C4: (3.981,133.383,75.337)
P: (-1.874,132.528,77.350)
C4': (-0.339,132.500,73.735)
C2': (1.828,131.652,73.227)
C2: (6.092,133.861,74.945)
N1: (6.410,133.978,76.244)
N3: (4.919,133.572,74.389)
N6: (5.749,133.905,78.466)
N7: (2.971,133.199,77.378)
N9: (2.646,133.112,75.150)
O5': (-0.965,132.282,76.064)
O3': (-0.153,130.282,72.812)
Image (generated by PyMOL):