Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0471:0472
Extra
PDB:
ATOM 1 O3' G A 470 19.818 149.642 52.497 1.00 41.85 O
ATOM 2 P C A 471 19.745 148.460 51.407 1.00 43.91 P
ATOM 3 OP1 C A 471 18.503 147.683 51.666 1.00 43.20 O
ATOM 4 OP2 C A 471 21.054 147.751 51.346 1.00 43.54 O
ATOM 5 O5' C A 471 19.578 149.231 50.024 1.00 46.78 O
ATOM 6 C5' C A 471 19.531 148.512 48.768 1.00 46.98 C
ATOM 7 C4' C A 471 19.013 149.413 47.667 1.00 47.25 C
ATOM 8 O4' C A 471 17.618 149.739 47.899 1.00 48.02 O
ATOM 9 C3' C A 471 19.698 150.764 47.575 1.00 46.81 C
ATOM 10 O3' C A 471 20.911 150.650 46.849 1.00 44.62 O
ATOM 11 C2' C A 471 18.655 151.614 46.863 1.00 46.93 C
ATOM 12 O2' C A 471 18.607 151.373 45.474 1.00 46.65 O
ATOM 13 C1' C A 471 17.364 151.065 47.467 1.00 48.18 C
ATOM 14 N1 C A 471 16.820 151.839 48.598 1.00 49.94 N
ATOM 15 C2 C A 471 16.137 153.044 48.334 1.00 50.66 C
ATOM 16 O2 C A 471 16.061 153.456 47.164 1.00 51.04 O
ATOM 17 N3 C A 471 15.580 153.726 49.361 1.00 50.43 N
ATOM 18 C4 C A 471 15.682 153.258 50.606 1.00 49.97 C
ATOM 19 N4 C A 471 15.081 153.946 51.582 1.00 49.58 N
ATOM 20 C5 C A 471 16.397 152.060 50.906 1.00 51.21 C
ATOM 21 C6 C A 471 16.947 151.391 49.882 1.00 50.19 C
ATOM 22 P A A 472 22.182 151.522 47.287 1.00 43.57 P
ATOM 23 OP1 A A 472 23.335 151.054 46.473 1.00 43.66 O
ATOM 24 OP2 A A 472 22.262 151.507 48.763 1.00 43.29 O
ATOM 25 O5' A A 472 21.827 153.007 46.838 1.00 43.62 O
TER
ATOM 1 O3' C B 471 20.911 150.650 46.849 1.00 44.62 O
ATOM 2 P A B 472 22.182 151.522 47.287 1.00 43.57 P
ATOM 3 OP1 A B 472 23.335 151.054 46.473 1.00 43.66 O
ATOM 4 OP2 A B 472 22.262 151.507 48.763 1.00 43.29 O
ATOM 5 O5' A B 472 21.827 153.007 46.838 1.00 43.62 O
ATOM 6 C5' A B 472 21.584 153.340 45.453 1.00 40.36 C
ATOM 7 C4' A B 472 20.917 154.688 45.374 1.00 39.62 C
ATOM 8 O4' A B 472 19.653 154.617 46.080 1.00 38.37 O
ATOM 9 C3' A B 472 21.700 155.788 46.070 1.00 40.30 C
ATOM 10 O3' A B 472 22.643 156.355 45.152 1.00 42.36 O
ATOM 11 C2' A B 472 20.607 156.759 46.516 1.00 39.63 C
ATOM 12 O2' A B 472 20.200 157.666 45.511 1.00 40.29 O
ATOM 13 C1' A B 472 19.445 155.804 46.818 1.00 39.24 C
ATOM 14 N9 A B 472 19.263 155.442 48.225 1.00 39.77 N
ATOM 15 C8 A B 472 20.019 154.582 48.980 1.00 40.89 C
ATOM 16 N7 A B 472 19.609 154.465 50.222 1.00 40.54 N
ATOM 17 C5 A B 472 18.509 155.306 50.292 1.00 39.91 C
ATOM 18 C6 A B 472 17.630 155.638 51.348 1.00 40.96 C
ATOM 19 N6 A B 472 17.728 155.147 52.586 1.00 37.48 N
ATOM 20 N1 A B 472 16.631 156.504 51.081 1.00 42.28 N
ATOM 21 C2 A B 472 16.527 156.998 49.839 1.00 43.30 C
ATOM 22 N3 A B 472 17.290 156.767 48.768 1.00 42.19 N
ATOM 23 C4 A B 472 18.277 155.906 49.066 1.00 41.05 C
ATOM 24 P A B 473 24.107 156.797 45.659 1.00 43.26 P
ATOM 25 OP1 A B 473 24.813 157.390 44.495 1.00 40.75 O
ATOM 26 OP2 A B 473 24.709 155.635 46.367 1.00 42.68 O
ATOM 27 O5' A B 473 23.806 157.958 46.711 1.00 39.74 O
TER
ATOM 2 P C A 471 19.745 148.460 51.407 1.00 43.91 P
ATOM 3 OP1 C A 471 18.503 147.683 51.666 1.00 43.20 O
ATOM 4 OP2 C A 471 21.054 147.751 51.346 1.00 43.54 O
ATOM 5 O5' C A 471 19.578 149.231 50.024 1.00 46.78 O
ATOM 6 C5' C A 471 19.531 148.512 48.768 1.00 46.98 C
ATOM 7 C4' C A 471 19.013 149.413 47.667 1.00 47.25 C
ATOM 8 O4' C A 471 17.618 149.739 47.899 1.00 48.02 O
ATOM 9 C3' C A 471 19.698 150.764 47.575 1.00 46.81 C
ATOM 10 O3' C A 471 20.911 150.650 46.849 1.00 44.62 O
ATOM 11 C2' C A 471 18.655 151.614 46.863 1.00 46.93 C
ATOM 12 O2' C A 471 18.607 151.373 45.474 1.00 46.65 O
ATOM 13 C1' C A 471 17.364 151.065 47.467 1.00 48.18 C
ATOM 14 N1 C A 471 16.820 151.839 48.598 1.00 49.94 N
ATOM 15 C2 C A 471 16.137 153.044 48.334 1.00 50.66 C
ATOM 16 O2 C A 471 16.061 153.456 47.164 1.00 51.04 O
ATOM 17 N3 C A 471 15.580 153.726 49.361 1.00 50.43 N
ATOM 18 C4 C A 471 15.682 153.258 50.606 1.00 49.97 C
ATOM 19 N4 C A 471 15.081 153.946 51.582 1.00 49.58 N
ATOM 20 C5 C A 471 16.397 152.060 50.906 1.00 51.21 C
ATOM 21 C6 C A 471 16.947 151.391 49.882 1.00 50.19 C
ATOM 22 P A A 472 22.182 151.522 47.287 1.00 43.57 P
ATOM 23 OP1 A A 472 23.335 151.054 46.473 1.00 43.66 O
ATOM 24 OP2 A A 472 22.262 151.507 48.763 1.00 43.29 O
ATOM 25 O5' A A 472 21.827 153.007 46.838 1.00 43.62 O
TER
ATOM 1 O3' C B 471 20.911 150.650 46.849 1.00 44.62 O
ATOM 2 P A B 472 22.182 151.522 47.287 1.00 43.57 P
ATOM 3 OP1 A B 472 23.335 151.054 46.473 1.00 43.66 O
ATOM 4 OP2 A B 472 22.262 151.507 48.763 1.00 43.29 O
ATOM 5 O5' A B 472 21.827 153.007 46.838 1.00 43.62 O
ATOM 6 C5' A B 472 21.584 153.340 45.453 1.00 40.36 C
ATOM 7 C4' A B 472 20.917 154.688 45.374 1.00 39.62 C
ATOM 8 O4' A B 472 19.653 154.617 46.080 1.00 38.37 O
ATOM 9 C3' A B 472 21.700 155.788 46.070 1.00 40.30 C
ATOM 10 O3' A B 472 22.643 156.355 45.152 1.00 42.36 O
ATOM 11 C2' A B 472 20.607 156.759 46.516 1.00 39.63 C
ATOM 12 O2' A B 472 20.200 157.666 45.511 1.00 40.29 O
ATOM 13 C1' A B 472 19.445 155.804 46.818 1.00 39.24 C
ATOM 14 N9 A B 472 19.263 155.442 48.225 1.00 39.77 N
ATOM 15 C8 A B 472 20.019 154.582 48.980 1.00 40.89 C
ATOM 16 N7 A B 472 19.609 154.465 50.222 1.00 40.54 N
ATOM 17 C5 A B 472 18.509 155.306 50.292 1.00 39.91 C
ATOM 18 C6 A B 472 17.630 155.638 51.348 1.00 40.96 C
ATOM 19 N6 A B 472 17.728 155.147 52.586 1.00 37.48 N
ATOM 20 N1 A B 472 16.631 156.504 51.081 1.00 42.28 N
ATOM 21 C2 A B 472 16.527 156.998 49.839 1.00 43.30 C
ATOM 22 N3 A B 472 17.290 156.767 48.768 1.00 42.19 N
ATOM 23 C4 A B 472 18.277 155.906 49.066 1.00 41.05 C
ATOM 24 P A B 473 24.107 156.797 45.659 1.00 43.26 P
ATOM 25 OP1 A B 473 24.813 157.390 44.495 1.00 40.75 O
ATOM 26 OP2 A B 473 24.709 155.635 46.367 1.00 42.68 O
ATOM 27 O5' A B 473 23.806 157.958 46.711 1.00 39.74 O
TER
Atoms:
C2: (16.137,153.044,48.334)
OP1: (18.503,147.683,51.666)
OP2: (21.054,147.751,51.346)
C4: (15.682,153.258,50.606)
O5': (19.578,149.231,50.024)
C3': (19.698,150.764,47.575)
C1': (17.364,151.065,47.467)
O4': (17.618,149.739,47.899)
C5': (19.531,148.512,48.768)
P: (19.745,148.460,51.407)
O2: (16.061,153.456,47.164)
C4': (19.013,149.413,47.667)
C2': (18.655,151.614,46.863)
O2': (18.607,151.373,45.474)
N1: (16.820,151.839,48.598)
N3: (15.580,153.726,49.361)
N4: (15.081,153.946,51.582)
C6: (16.947,151.391,49.882)
C5: (16.397,152.060,50.906)
O3': (20.911,150.650,46.849)
OP1: (18.503,147.683,51.666)
OP2: (21.054,147.751,51.346)
C4: (15.682,153.258,50.606)
O5': (19.578,149.231,50.024)
C3': (19.698,150.764,47.575)
C1': (17.364,151.065,47.467)
O4': (17.618,149.739,47.899)
C5': (19.531,148.512,48.768)
P: (19.745,148.460,51.407)
O2: (16.061,153.456,47.164)
C4': (19.013,149.413,47.667)
C2': (18.655,151.614,46.863)
O2': (18.607,151.373,45.474)
N1: (16.820,151.839,48.598)
N3: (15.580,153.726,49.361)
N4: (15.081,153.946,51.582)
C6: (16.947,151.391,49.882)
C5: (16.397,152.060,50.906)
O3': (20.911,150.650,46.849)
OP1: (23.335,151.054,46.473)
OP2: (22.262,151.507,48.763)
C3': (21.700,155.788,46.070)
C1': (19.445,155.804,46.818)
C5': (21.584,153.340,45.453)
O4': (19.653,154.617,46.080)
C8: (20.019,154.582,48.980)
O2': (20.200,157.666,45.511)
C6: (17.630,155.638,51.348)
C5: (18.509,155.306,50.292)
C4: (18.277,155.906,49.066)
P: (22.182,151.522,47.287)
C4': (20.917,154.688,45.374)
C2': (20.607,156.759,46.516)
C2: (16.527,156.998,49.839)
N1: (16.631,156.504,51.081)
N3: (17.290,156.767,48.768)
N6: (17.728,155.147,52.586)
N7: (19.609,154.465,50.222)
N9: (19.263,155.442,48.225)
O5': (21.827,153.007,46.838)
O3': (22.643,156.355,45.152)
OP2: (22.262,151.507,48.763)
C3': (21.700,155.788,46.070)
C1': (19.445,155.804,46.818)
C5': (21.584,153.340,45.453)
O4': (19.653,154.617,46.080)
C8: (20.019,154.582,48.980)
O2': (20.200,157.666,45.511)
C6: (17.630,155.638,51.348)
C5: (18.509,155.306,50.292)
C4: (18.277,155.906,49.066)
P: (22.182,151.522,47.287)
C4': (20.917,154.688,45.374)
C2': (20.607,156.759,46.516)
C2: (16.527,156.998,49.839)
N1: (16.631,156.504,51.081)
N3: (17.290,156.767,48.768)
N6: (17.728,155.147,52.586)
N7: (19.609,154.465,50.222)
N9: (19.263,155.442,48.225)
O5': (21.827,153.007,46.838)
O3': (22.643,156.355,45.152)
Image (generated by PyMOL):