Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XDB:G16:G25
Extra
PDB:
ATOM 1 O3' U A 15 -3.250 -0.810 15.573 1.00 51.86 O
ATOM 2 P A A 16 -2.290 -0.127 16.654 1.00 61.05 P
ATOM 3 OP1 A A 16 -0.979 -0.786 16.516 1.00 64.59 O
ATOM 4 OP2 A A 16 -2.958 -0.157 17.969 1.00 70.25 O
ATOM 5 O5' A A 16 -2.236 1.367 16.154 1.00 50.54 O
ATOM 6 C5' A A 16 -1.480 1.782 15.036 1.00 48.62 C
ATOM 7 C4' A A 16 -1.551 3.281 14.933 1.00 52.06 C
ATOM 8 O4' A A 16 -2.930 3.700 14.739 1.00 56.32 O
ATOM 9 C3' A A 16 -1.104 4.031 16.175 1.00 45.72 C
ATOM 10 O3' A A 16 0.296 4.199 16.213 1.00 43.82 O
ATOM 11 C2' A A 16 -1.829 5.349 16.014 1.00 44.57 C
ATOM 12 O2' A A 16 -1.172 6.077 14.997 1.00 49.10 O
ATOM 13 C1' A A 16 -3.174 4.887 15.454 1.00 54.62 C
ATOM 14 N9 A A 16 -4.135 4.601 16.539 1.00 57.09 N
ATOM 15 C8 A A 16 -4.523 3.387 17.034 1.00 54.52 C
ATOM 16 N7 A A 16 -5.379 3.467 18.019 1.00 55.72 N
ATOM 17 C5 A A 16 -5.573 4.826 18.185 1.00 58.66 C
ATOM 18 C6 A A 16 -6.378 5.569 19.063 1.00 58.59 C
ATOM 19 N6 A A 16 -7.175 5.037 19.982 1.00 52.32 N
ATOM 20 N1 A A 16 -6.344 6.910 18.959 1.00 64.30 N
ATOM 21 C2 A A 16 -5.554 7.459 18.031 1.00 68.11 C
ATOM 22 N3 A A 16 -4.755 6.873 17.146 1.00 70.10 N
ATOM 23 C4 A A 16 -4.813 5.536 17.279 1.00 63.95 C
ATOM 24 P C A 17 1.098 4.262 17.592 1.00 59.78 P
ATOM 25 OP1 C A 17 2.475 4.615 17.161 1.00 54.91 O
ATOM 26 OP2 C A 17 0.813 3.008 18.356 1.00 58.69 O
ATOM 27 O5' C A 17 0.453 5.507 18.315 1.00 62.19 O
TER
ATOM 1 O3' G B 24 -7.468 12.067 15.659 1.00 41.57 O
ATOM 2 P U B 25 -8.037 12.941 14.436 1.00 54.33 P
ATOM 3 OP1 U B 25 -7.642 14.341 14.712 1.00 51.16 O
ATOM 4 OP2 U B 25 -9.463 12.614 14.214 1.00 52.93 O
ATOM 5 O5' U B 25 -7.240 12.352 13.205 1.00 52.27 O
ATOM 6 C5' U B 25 -5.871 12.649 13.003 1.00 41.68 C
ATOM 7 C4' U B 25 -5.122 11.455 12.458 1.00 43.89 C
ATOM 8 O4' U B 25 -4.772 10.549 13.538 1.00 41.15 O
ATOM 9 C3' U B 25 -5.831 10.561 11.439 1.00 40.61 C
ATOM 10 O3' U B 25 -5.820 11.087 10.131 1.00 36.98 O
ATOM 11 C2' U B 25 -4.994 9.299 11.526 1.00 49.28 C
ATOM 12 O2' U B 25 -3.746 9.517 10.888 1.00 51.45 O
ATOM 13 C1' U B 25 -4.728 9.236 13.026 1.00 49.42 C
ATOM 14 N1 U B 25 -5.705 8.426 13.762 1.00 56.71 N
ATOM 15 C2 U B 25 -5.616 7.058 13.612 1.00 61.08 C
ATOM 16 O2 U B 25 -4.797 6.525 12.889 1.00 64.42 O
ATOM 17 N3 U B 25 -6.529 6.346 14.336 1.00 55.47 N
ATOM 18 C4 U B 25 -7.490 6.860 15.172 1.00 51.91 C
ATOM 19 O4 U B 25 -8.230 6.084 15.762 1.00 55.87 O
ATOM 20 C5 U B 25 -7.522 8.283 15.272 1.00 50.86 C
ATOM 21 C6 U B 25 -6.639 9.006 14.580 1.00 52.29 C
ATOM 22 P G B 26 -6.881 10.724 8.987 1.00 53.38 P
ATOM 23 OP1 G B 26 -6.420 11.585 7.870 1.00 45.69 O
ATOM 24 OP2 G B 26 -8.286 10.870 9.441 1.00 56.92 O
ATOM 25 O5' G B 26 -6.579 9.186 8.735 1.00 53.12 O
TER
ATOM 2 P A A 16 -2.290 -0.127 16.654 1.00 61.05 P
ATOM 3 OP1 A A 16 -0.979 -0.786 16.516 1.00 64.59 O
ATOM 4 OP2 A A 16 -2.958 -0.157 17.969 1.00 70.25 O
ATOM 5 O5' A A 16 -2.236 1.367 16.154 1.00 50.54 O
ATOM 6 C5' A A 16 -1.480 1.782 15.036 1.00 48.62 C
ATOM 7 C4' A A 16 -1.551 3.281 14.933 1.00 52.06 C
ATOM 8 O4' A A 16 -2.930 3.700 14.739 1.00 56.32 O
ATOM 9 C3' A A 16 -1.104 4.031 16.175 1.00 45.72 C
ATOM 10 O3' A A 16 0.296 4.199 16.213 1.00 43.82 O
ATOM 11 C2' A A 16 -1.829 5.349 16.014 1.00 44.57 C
ATOM 12 O2' A A 16 -1.172 6.077 14.997 1.00 49.10 O
ATOM 13 C1' A A 16 -3.174 4.887 15.454 1.00 54.62 C
ATOM 14 N9 A A 16 -4.135 4.601 16.539 1.00 57.09 N
ATOM 15 C8 A A 16 -4.523 3.387 17.034 1.00 54.52 C
ATOM 16 N7 A A 16 -5.379 3.467 18.019 1.00 55.72 N
ATOM 17 C5 A A 16 -5.573 4.826 18.185 1.00 58.66 C
ATOM 18 C6 A A 16 -6.378 5.569 19.063 1.00 58.59 C
ATOM 19 N6 A A 16 -7.175 5.037 19.982 1.00 52.32 N
ATOM 20 N1 A A 16 -6.344 6.910 18.959 1.00 64.30 N
ATOM 21 C2 A A 16 -5.554 7.459 18.031 1.00 68.11 C
ATOM 22 N3 A A 16 -4.755 6.873 17.146 1.00 70.10 N
ATOM 23 C4 A A 16 -4.813 5.536 17.279 1.00 63.95 C
ATOM 24 P C A 17 1.098 4.262 17.592 1.00 59.78 P
ATOM 25 OP1 C A 17 2.475 4.615 17.161 1.00 54.91 O
ATOM 26 OP2 C A 17 0.813 3.008 18.356 1.00 58.69 O
ATOM 27 O5' C A 17 0.453 5.507 18.315 1.00 62.19 O
TER
ATOM 1 O3' G B 24 -7.468 12.067 15.659 1.00 41.57 O
ATOM 2 P U B 25 -8.037 12.941 14.436 1.00 54.33 P
ATOM 3 OP1 U B 25 -7.642 14.341 14.712 1.00 51.16 O
ATOM 4 OP2 U B 25 -9.463 12.614 14.214 1.00 52.93 O
ATOM 5 O5' U B 25 -7.240 12.352 13.205 1.00 52.27 O
ATOM 6 C5' U B 25 -5.871 12.649 13.003 1.00 41.68 C
ATOM 7 C4' U B 25 -5.122 11.455 12.458 1.00 43.89 C
ATOM 8 O4' U B 25 -4.772 10.549 13.538 1.00 41.15 O
ATOM 9 C3' U B 25 -5.831 10.561 11.439 1.00 40.61 C
ATOM 10 O3' U B 25 -5.820 11.087 10.131 1.00 36.98 O
ATOM 11 C2' U B 25 -4.994 9.299 11.526 1.00 49.28 C
ATOM 12 O2' U B 25 -3.746 9.517 10.888 1.00 51.45 O
ATOM 13 C1' U B 25 -4.728 9.236 13.026 1.00 49.42 C
ATOM 14 N1 U B 25 -5.705 8.426 13.762 1.00 56.71 N
ATOM 15 C2 U B 25 -5.616 7.058 13.612 1.00 61.08 C
ATOM 16 O2 U B 25 -4.797 6.525 12.889 1.00 64.42 O
ATOM 17 N3 U B 25 -6.529 6.346 14.336 1.00 55.47 N
ATOM 18 C4 U B 25 -7.490 6.860 15.172 1.00 51.91 C
ATOM 19 O4 U B 25 -8.230 6.084 15.762 1.00 55.87 O
ATOM 20 C5 U B 25 -7.522 8.283 15.272 1.00 50.86 C
ATOM 21 C6 U B 25 -6.639 9.006 14.580 1.00 52.29 C
ATOM 22 P G B 26 -6.881 10.724 8.987 1.00 53.38 P
ATOM 23 OP1 G B 26 -6.420 11.585 7.870 1.00 45.69 O
ATOM 24 OP2 G B 26 -8.286 10.870 9.441 1.00 56.92 O
ATOM 25 O5' G B 26 -6.579 9.186 8.735 1.00 53.12 O
TER
Atoms:
OP1: (-0.979,-0.786,16.516)
OP2: (-2.958,-0.157,17.969)
C3': (-1.104,4.031,16.175)
C1': (-3.174,4.887,15.454)
C5': (-1.480,1.782,15.036)
O4': (-2.930,3.700,14.739)
C8: (-4.523,3.387,17.034)
O2': (-1.172,6.077,14.997)
C6: (-6.378,5.569,19.063)
C5: (-5.573,4.826,18.185)
C4: (-4.813,5.536,17.279)
P: (-2.290,-0.127,16.654)
C4': (-1.551,3.281,14.933)
C2': (-1.829,5.349,16.014)
C2: (-5.554,7.459,18.031)
N1: (-6.344,6.910,18.959)
N3: (-4.755,6.873,17.146)
N6: (-7.175,5.037,19.982)
N7: (-5.379,3.467,18.019)
N9: (-4.135,4.601,16.539)
O5': (-2.236,1.367,16.154)
O3': (0.296,4.199,16.213)
OP2: (-2.958,-0.157,17.969)
C3': (-1.104,4.031,16.175)
C1': (-3.174,4.887,15.454)
C5': (-1.480,1.782,15.036)
O4': (-2.930,3.700,14.739)
C8: (-4.523,3.387,17.034)
O2': (-1.172,6.077,14.997)
C6: (-6.378,5.569,19.063)
C5: (-5.573,4.826,18.185)
C4: (-4.813,5.536,17.279)
P: (-2.290,-0.127,16.654)
C4': (-1.551,3.281,14.933)
C2': (-1.829,5.349,16.014)
C2: (-5.554,7.459,18.031)
N1: (-6.344,6.910,18.959)
N3: (-4.755,6.873,17.146)
N6: (-7.175,5.037,19.982)
N7: (-5.379,3.467,18.019)
N9: (-4.135,4.601,16.539)
O5': (-2.236,1.367,16.154)
O3': (0.296,4.199,16.213)
C4: (-7.490,6.860,15.172)
N3: (-6.529,6.346,14.336)
OP1: (-7.642,14.341,14.712)
OP2: (-9.463,12.614,14.214)
C2: (-5.616,7.058,13.612)
C1': (-4.728,9.236,13.026)
C3': (-5.831,10.561,11.439)
O5': (-7.240,12.352,13.205)
O4': (-4.772,10.549,13.538)
C5': (-5.871,12.649,13.003)
P: (-8.037,12.941,14.436)
C4': (-5.122,11.455,12.458)
C2': (-4.994,9.299,11.526)
O2': (-3.746,9.517,10.888)
N1: (-5.705,8.426,13.762)
O4: (-8.230,6.084,15.762)
O2: (-4.797,6.525,12.889)
C6: (-6.639,9.006,14.580)
C5: (-7.522,8.283,15.272)
O3': (-5.820,11.087,10.131)
N3: (-6.529,6.346,14.336)
OP1: (-7.642,14.341,14.712)
OP2: (-9.463,12.614,14.214)
C2: (-5.616,7.058,13.612)
C1': (-4.728,9.236,13.026)
C3': (-5.831,10.561,11.439)
O5': (-7.240,12.352,13.205)
O4': (-4.772,10.549,13.538)
C5': (-5.871,12.649,13.003)
P: (-8.037,12.941,14.436)
C4': (-5.122,11.455,12.458)
C2': (-4.994,9.299,11.526)
O2': (-3.746,9.517,10.888)
N1: (-5.705,8.426,13.762)
O4: (-8.230,6.084,15.762)
O2: (-4.797,6.525,12.889)
C6: (-6.639,9.006,14.580)
C5: (-7.522,8.283,15.272)
O3': (-5.820,11.087,10.131)
Image (generated by PyMOL):