Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B65:B63
Extra
PDB:
ATOM 1 O3' G A 64 -24.597 49.895 4.513 1.00 84.23 O
ATOM 2 P A A 65 -24.940 51.475 4.437 1.00 83.65 P
ATOM 3 OP1 A A 65 -25.803 51.706 3.253 1.00 82.96 O
ATOM 4 OP2 A A 65 -23.718 52.308 4.618 1.00 83.51 O
ATOM 5 O5' A A 65 -25.849 51.655 5.733 1.00 84.25 O
ATOM 6 C5' A A 65 -26.634 50.556 6.208 1.00 83.96 C
ATOM 7 C4' A A 65 -26.532 50.416 7.710 1.00 83.54 C
ATOM 8 O4' A A 65 -25.145 50.363 8.110 1.00 82.56 O
ATOM 9 C3' A A 65 -27.115 51.545 8.533 1.00 83.94 C
ATOM 10 O3' A A 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 11 C2' A A 65 -26.381 51.417 9.856 1.00 82.53 C
ATOM 12 O2' A A 65 -26.947 50.439 10.705 1.00 80.45 O
ATOM 13 C1' A A 65 -25.006 50.942 9.394 1.00 82.49 C
ATOM 14 N9 A A 65 -24.009 52.001 9.305 1.00 82.29 N
ATOM 15 C8 A A 65 -23.494 52.561 8.162 1.00 82.54 C
ATOM 16 N7 A A 65 -22.562 53.456 8.385 1.00 82.23 N
ATOM 17 C5 A A 65 -22.468 53.500 9.768 1.00 81.54 C
ATOM 18 C6 A A 65 -21.656 54.246 10.624 1.00 80.89 C
ATOM 19 N6 A A 65 -20.747 55.121 10.192 1.00 80.24 N
ATOM 20 N1 A A 65 -21.808 54.060 11.955 1.00 80.02 N
ATOM 21 C2 A A 65 -22.721 53.177 12.378 1.00 79.06 C
ATOM 22 N3 A A 65 -23.544 52.411 11.666 1.00 79.40 N
ATOM 23 C4 A A 65 -23.364 52.621 10.350 1.00 81.45 C
ATOM 24 P A A 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 25 OP1 A A 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 26 OP2 A A 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 27 O5' A A 66 -30.072 53.218 9.388 1.00 90.52 O
TER
ATOM 1 O3' G B 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 2 P U B 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U B 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U B 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U B 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U B 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U B 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U B 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U B 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U B 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U B 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U B 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U B 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U B 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U B 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U B 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U B 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U B 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U B 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U B 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U B 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G B 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G B 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G B 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G B 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 2 P A A 65 -24.940 51.475 4.437 1.00 83.65 P
ATOM 3 OP1 A A 65 -25.803 51.706 3.253 1.00 82.96 O
ATOM 4 OP2 A A 65 -23.718 52.308 4.618 1.00 83.51 O
ATOM 5 O5' A A 65 -25.849 51.655 5.733 1.00 84.25 O
ATOM 6 C5' A A 65 -26.634 50.556 6.208 1.00 83.96 C
ATOM 7 C4' A A 65 -26.532 50.416 7.710 1.00 83.54 C
ATOM 8 O4' A A 65 -25.145 50.363 8.110 1.00 82.56 O
ATOM 9 C3' A A 65 -27.115 51.545 8.533 1.00 83.94 C
ATOM 10 O3' A A 65 -28.509 51.393 8.682 1.00 86.65 O
ATOM 11 C2' A A 65 -26.381 51.417 9.856 1.00 82.53 C
ATOM 12 O2' A A 65 -26.947 50.439 10.705 1.00 80.45 O
ATOM 13 C1' A A 65 -25.006 50.942 9.394 1.00 82.49 C
ATOM 14 N9 A A 65 -24.009 52.001 9.305 1.00 82.29 N
ATOM 15 C8 A A 65 -23.494 52.561 8.162 1.00 82.54 C
ATOM 16 N7 A A 65 -22.562 53.456 8.385 1.00 82.23 N
ATOM 17 C5 A A 65 -22.468 53.500 9.768 1.00 81.54 C
ATOM 18 C6 A A 65 -21.656 54.246 10.624 1.00 80.89 C
ATOM 19 N6 A A 65 -20.747 55.121 10.192 1.00 80.24 N
ATOM 20 N1 A A 65 -21.808 54.060 11.955 1.00 80.02 N
ATOM 21 C2 A A 65 -22.721 53.177 12.378 1.00 79.06 C
ATOM 22 N3 A A 65 -23.544 52.411 11.666 1.00 79.40 N
ATOM 23 C4 A A 65 -23.364 52.621 10.350 1.00 81.45 C
ATOM 24 P A A 66 -29.474 52.517 8.090 1.00 90.31 P
ATOM 25 OP1 A A 66 -30.578 51.857 7.355 1.00 90.56 O
ATOM 26 OP2 A A 66 -28.589 53.485 7.384 1.00 90.06 O
ATOM 27 O5' A A 66 -30.072 53.218 9.388 1.00 90.52 O
TER
ATOM 1 O3' G B 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 2 P U B 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U B 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U B 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U B 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U B 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U B 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U B 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U B 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U B 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U B 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U B 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U B 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U B 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U B 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U B 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U B 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U B 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U B 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U B 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U B 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G B 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G B 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G B 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G B 64 -20.960 49.918 2.819 1.00 77.20 O
TER
Atoms:
OP1: (-25.803,51.706,3.253)
OP2: (-23.718,52.308,4.618)
C3': (-27.115,51.545,8.533)
C1': (-25.006,50.942,9.394)
C5': (-26.634,50.556,6.208)
O4': (-25.145,50.363,8.110)
C8: (-23.494,52.561,8.162)
O2': (-26.947,50.439,10.705)
C6: (-21.656,54.246,10.624)
C5: (-22.468,53.500,9.768)
C4: (-23.364,52.621,10.350)
P: (-24.940,51.475,4.437)
C4': (-26.532,50.416,7.710)
C2': (-26.381,51.417,9.856)
C2: (-22.721,53.177,12.378)
N1: (-21.808,54.060,11.955)
N3: (-23.544,52.411,11.666)
N6: (-20.747,55.121,10.192)
N7: (-22.562,53.456,8.385)
N9: (-24.009,52.001,9.305)
O5': (-25.849,51.655,5.733)
O3': (-28.509,51.393,8.682)
OP2: (-23.718,52.308,4.618)
C3': (-27.115,51.545,8.533)
C1': (-25.006,50.942,9.394)
C5': (-26.634,50.556,6.208)
O4': (-25.145,50.363,8.110)
C8: (-23.494,52.561,8.162)
O2': (-26.947,50.439,10.705)
C6: (-21.656,54.246,10.624)
C5: (-22.468,53.500,9.768)
C4: (-23.364,52.621,10.350)
P: (-24.940,51.475,4.437)
C4': (-26.532,50.416,7.710)
C2': (-26.381,51.417,9.856)
C2: (-22.721,53.177,12.378)
N1: (-21.808,54.060,11.955)
N3: (-23.544,52.411,11.666)
N6: (-20.747,55.121,10.192)
N7: (-22.562,53.456,8.385)
N9: (-24.009,52.001,9.305)
O5': (-25.849,51.655,5.733)
O3': (-28.509,51.393,8.682)
C4: (-19.082,51.996,11.594)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
Image (generated by PyMOL):