Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0280:0279
Extra
PDB:
ATOM 1 O3' C A 279 55.501 129.007 -1.865 1.00 83.18 O
ATOM 2 P G A 280 54.945 129.831 -0.612 1.00 82.89 P
ATOM 3 OP1 G A 280 53.963 130.824 -1.117 1.00 83.16 O
ATOM 4 OP2 G A 280 56.118 130.293 0.173 1.00 83.44 O
ATOM 5 O5' G A 280 54.156 128.732 0.229 1.00 83.28 O
ATOM 6 C5' G A 280 53.011 128.060 -0.331 1.00 81.93 C
ATOM 7 C4' G A 280 52.627 126.870 0.520 1.00 80.83 C
ATOM 8 O4' G A 280 53.670 125.861 0.459 1.00 80.35 O
ATOM 9 C3' G A 280 52.465 127.153 2.002 1.00 79.90 C
ATOM 10 O3' G A 280 51.191 127.716 2.294 1.00 80.90 O
ATOM 11 C2' G A 280 52.685 125.776 2.612 1.00 78.75 C
ATOM 12 O2' G A 280 51.560 124.934 2.477 1.00 78.15 O
ATOM 13 C1' G A 280 53.811 125.240 1.727 1.00 78.15 C
ATOM 14 N9 G A 280 55.138 125.567 2.239 1.00 76.98 N
ATOM 15 C8 G A 280 55.860 126.712 1.991 1.00 76.41 C
ATOM 16 N7 G A 280 57.022 126.725 2.585 1.00 76.38 N
ATOM 17 C5 G A 280 57.072 125.517 3.267 1.00 76.31 C
ATOM 18 C6 G A 280 58.091 124.968 4.091 1.00 75.83 C
ATOM 19 O6 G A 280 59.194 125.449 4.376 1.00 75.03 O
ATOM 20 N1 G A 280 57.724 123.725 4.597 1.00 75.70 N
ATOM 21 C2 G A 280 56.538 123.084 4.335 1.00 75.68 C
ATOM 22 N2 G A 280 56.370 121.886 4.919 1.00 75.96 N
ATOM 23 N3 G A 280 55.585 123.579 3.559 1.00 75.52 N
ATOM 24 C4 G A 280 55.916 124.791 3.065 1.00 76.38 C
ATOM 25 P A A 281 50.964 128.491 3.686 1.00 82.47 P
ATOM 26 OP1 A A 281 49.656 129.193 3.606 1.00 81.76 O
ATOM 27 OP2 A A 281 52.199 129.270 4.000 1.00 81.49 O
ATOM 28 O5' A A 281 50.824 127.305 4.740 1.00 80.96 O
TER
ATOM 1 O3' C B 278 61.645 128.609 -1.844 1.00 88.51 O
ATOM 2 P C B 279 60.685 129.158 -0.681 1.00 87.53 P
ATOM 3 OP1 C B 279 60.620 130.636 -0.819 1.00 86.81 O
ATOM 4 OP2 C B 279 61.143 128.558 0.600 1.00 88.62 O
ATOM 5 O5' C B 279 59.255 128.568 -1.062 1.00 86.67 O
ATOM 6 C5' C B 279 58.666 128.869 -2.339 1.00 86.31 C
ATOM 7 C4' C B 279 57.522 127.928 -2.641 1.00 85.91 C
ATOM 8 O4' C B 279 57.984 126.551 -2.647 1.00 85.85 O
ATOM 9 C3' C B 279 56.377 127.915 -1.647 1.00 84.59 C
ATOM 10 O3' C B 279 55.501 129.007 -1.865 1.00 83.18 O
ATOM 11 C2' C B 279 55.702 126.586 -1.957 1.00 85.16 C
ATOM 12 O2' C B 279 54.868 126.654 -3.099 1.00 84.18 O
ATOM 13 C1' C B 279 56.915 125.696 -2.261 1.00 85.52 C
ATOM 14 N1 C B 279 57.355 124.840 -1.135 1.00 84.96 N
ATOM 15 C2 C B 279 56.530 123.765 -0.737 1.00 84.53 C
ATOM 16 O2 C B 279 55.443 123.586 -1.313 1.00 84.36 O
ATOM 17 N3 C B 279 56.939 122.959 0.264 1.00 84.52 N
ATOM 18 C4 C B 279 58.107 123.183 0.869 1.00 85.14 C
ATOM 19 N4 C B 279 58.475 122.340 1.840 1.00 86.16 N
ATOM 20 C5 C B 279 58.953 124.276 0.503 1.00 84.26 C
ATOM 21 C6 C B 279 58.542 125.069 -0.493 1.00 83.98 C
ATOM 22 P G B 280 54.945 129.831 -0.612 1.00 82.89 P
ATOM 23 OP1 G B 280 53.963 130.824 -1.117 1.00 83.16 O
ATOM 24 OP2 G B 280 56.118 130.293 0.173 1.00 83.44 O
ATOM 25 O5' G B 280 54.156 128.732 0.229 1.00 83.28 O
TER
ATOM 2 P G A 280 54.945 129.831 -0.612 1.00 82.89 P
ATOM 3 OP1 G A 280 53.963 130.824 -1.117 1.00 83.16 O
ATOM 4 OP2 G A 280 56.118 130.293 0.173 1.00 83.44 O
ATOM 5 O5' G A 280 54.156 128.732 0.229 1.00 83.28 O
ATOM 6 C5' G A 280 53.011 128.060 -0.331 1.00 81.93 C
ATOM 7 C4' G A 280 52.627 126.870 0.520 1.00 80.83 C
ATOM 8 O4' G A 280 53.670 125.861 0.459 1.00 80.35 O
ATOM 9 C3' G A 280 52.465 127.153 2.002 1.00 79.90 C
ATOM 10 O3' G A 280 51.191 127.716 2.294 1.00 80.90 O
ATOM 11 C2' G A 280 52.685 125.776 2.612 1.00 78.75 C
ATOM 12 O2' G A 280 51.560 124.934 2.477 1.00 78.15 O
ATOM 13 C1' G A 280 53.811 125.240 1.727 1.00 78.15 C
ATOM 14 N9 G A 280 55.138 125.567 2.239 1.00 76.98 N
ATOM 15 C8 G A 280 55.860 126.712 1.991 1.00 76.41 C
ATOM 16 N7 G A 280 57.022 126.725 2.585 1.00 76.38 N
ATOM 17 C5 G A 280 57.072 125.517 3.267 1.00 76.31 C
ATOM 18 C6 G A 280 58.091 124.968 4.091 1.00 75.83 C
ATOM 19 O6 G A 280 59.194 125.449 4.376 1.00 75.03 O
ATOM 20 N1 G A 280 57.724 123.725 4.597 1.00 75.70 N
ATOM 21 C2 G A 280 56.538 123.084 4.335 1.00 75.68 C
ATOM 22 N2 G A 280 56.370 121.886 4.919 1.00 75.96 N
ATOM 23 N3 G A 280 55.585 123.579 3.559 1.00 75.52 N
ATOM 24 C4 G A 280 55.916 124.791 3.065 1.00 76.38 C
ATOM 25 P A A 281 50.964 128.491 3.686 1.00 82.47 P
ATOM 26 OP1 A A 281 49.656 129.193 3.606 1.00 81.76 O
ATOM 27 OP2 A A 281 52.199 129.270 4.000 1.00 81.49 O
ATOM 28 O5' A A 281 50.824 127.305 4.740 1.00 80.96 O
TER
ATOM 1 O3' C B 278 61.645 128.609 -1.844 1.00 88.51 O
ATOM 2 P C B 279 60.685 129.158 -0.681 1.00 87.53 P
ATOM 3 OP1 C B 279 60.620 130.636 -0.819 1.00 86.81 O
ATOM 4 OP2 C B 279 61.143 128.558 0.600 1.00 88.62 O
ATOM 5 O5' C B 279 59.255 128.568 -1.062 1.00 86.67 O
ATOM 6 C5' C B 279 58.666 128.869 -2.339 1.00 86.31 C
ATOM 7 C4' C B 279 57.522 127.928 -2.641 1.00 85.91 C
ATOM 8 O4' C B 279 57.984 126.551 -2.647 1.00 85.85 O
ATOM 9 C3' C B 279 56.377 127.915 -1.647 1.00 84.59 C
ATOM 10 O3' C B 279 55.501 129.007 -1.865 1.00 83.18 O
ATOM 11 C2' C B 279 55.702 126.586 -1.957 1.00 85.16 C
ATOM 12 O2' C B 279 54.868 126.654 -3.099 1.00 84.18 O
ATOM 13 C1' C B 279 56.915 125.696 -2.261 1.00 85.52 C
ATOM 14 N1 C B 279 57.355 124.840 -1.135 1.00 84.96 N
ATOM 15 C2 C B 279 56.530 123.765 -0.737 1.00 84.53 C
ATOM 16 O2 C B 279 55.443 123.586 -1.313 1.00 84.36 O
ATOM 17 N3 C B 279 56.939 122.959 0.264 1.00 84.52 N
ATOM 18 C4 C B 279 58.107 123.183 0.869 1.00 85.14 C
ATOM 19 N4 C B 279 58.475 122.340 1.840 1.00 86.16 N
ATOM 20 C5 C B 279 58.953 124.276 0.503 1.00 84.26 C
ATOM 21 C6 C B 279 58.542 125.069 -0.493 1.00 83.98 C
ATOM 22 P G B 280 54.945 129.831 -0.612 1.00 82.89 P
ATOM 23 OP1 G B 280 53.963 130.824 -1.117 1.00 83.16 O
ATOM 24 OP2 G B 280 56.118 130.293 0.173 1.00 83.44 O
ATOM 25 O5' G B 280 54.156 128.732 0.229 1.00 83.28 O
TER
Atoms:
OP1: (53.963,130.824,-1.117)
OP2: (56.118,130.293,0.173)
C3': (52.465,127.153,2.002)
C1': (53.811,125.240,1.727)
C5': (53.011,128.060,-0.331)
O6: (59.194,125.449,4.376)
O4': (53.670,125.861,0.459)
C8: (55.860,126.712,1.991)
C2: (56.538,123.084,4.335)
C6: (58.091,124.968,4.091)
C5: (57.072,125.517,3.267)
C4: (55.916,124.791,3.065)
P: (54.945,129.831,-0.612)
C4': (52.627,126.870,0.520)
C2': (52.685,125.776,2.612)
O2': (51.560,124.934,2.477)
N1: (57.724,123.725,4.597)
N2: (56.370,121.886,4.919)
N3: (55.585,123.579,3.559)
N7: (57.022,126.725,2.585)
N9: (55.138,125.567,2.239)
O5': (54.156,128.732,0.229)
O3': (51.191,127.716,2.294)
OP2: (56.118,130.293,0.173)
C3': (52.465,127.153,2.002)
C1': (53.811,125.240,1.727)
C5': (53.011,128.060,-0.331)
O6: (59.194,125.449,4.376)
O4': (53.670,125.861,0.459)
C8: (55.860,126.712,1.991)
C2: (56.538,123.084,4.335)
C6: (58.091,124.968,4.091)
C5: (57.072,125.517,3.267)
C4: (55.916,124.791,3.065)
P: (54.945,129.831,-0.612)
C4': (52.627,126.870,0.520)
C2': (52.685,125.776,2.612)
O2': (51.560,124.934,2.477)
N1: (57.724,123.725,4.597)
N2: (56.370,121.886,4.919)
N3: (55.585,123.579,3.559)
N7: (57.022,126.725,2.585)
N9: (55.138,125.567,2.239)
O5': (54.156,128.732,0.229)
O3': (51.191,127.716,2.294)
C2: (56.530,123.765,-0.737)
OP1: (60.620,130.636,-0.819)
OP2: (61.143,128.558,0.600)
C4: (58.107,123.183,0.869)
O5': (59.255,128.568,-1.062)
C3': (56.377,127.915,-1.647)
C1': (56.915,125.696,-2.261)
O4': (57.984,126.551,-2.647)
C5': (58.666,128.869,-2.339)
P: (60.685,129.158,-0.681)
O2: (55.443,123.586,-1.313)
C4': (57.522,127.928,-2.641)
C2': (55.702,126.586,-1.957)
O2': (54.868,126.654,-3.099)
N1: (57.355,124.840,-1.135)
N3: (56.939,122.959,0.264)
N4: (58.475,122.340,1.840)
C6: (58.542,125.069,-0.493)
C5: (58.953,124.276,0.503)
O3': (55.501,129.007,-1.865)
OP1: (60.620,130.636,-0.819)
OP2: (61.143,128.558,0.600)
C4: (58.107,123.183,0.869)
O5': (59.255,128.568,-1.062)
C3': (56.377,127.915,-1.647)
C1': (56.915,125.696,-2.261)
O4': (57.984,126.551,-2.647)
C5': (58.666,128.869,-2.339)
P: (60.685,129.158,-0.681)
O2: (55.443,123.586,-1.313)
C4': (57.522,127.928,-2.641)
C2': (55.702,126.586,-1.957)
O2': (54.868,126.654,-3.099)
N1: (57.355,124.840,-1.135)
N3: (56.939,122.959,0.264)
N4: (58.475,122.340,1.840)
C6: (58.542,125.069,-0.493)
C5: (58.953,124.276,0.503)
O3': (55.501,129.007,-1.865)
Image (generated by PyMOL):