ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1839:1841

Extra

PDB:
ATOM 1 O3' G A 838 1.739 25.983 108.572 1.00 51.28 O
ATOM 2 P A A 839 0.293 25.302 108.485 1.00 62.86 P
ATOM 3 OP1 A A 839 -0.486 26.005 107.398 1.00 62.90 O
ATOM 4 OP2 A A 839 -0.242 25.278 109.889 1.00 63.30 O
ATOM 5 O5' A A 839 0.608 23.842 108.007 1.00 62.33 O
ATOM 6 C5' A A 839 1.433 22.995 108.747 1.00 62.18 C
ATOM 7 C4' A A 839 2.400 22.331 107.844 1.00 61.65 C
ATOM 8 O4' A A 839 3.422 23.273 107.499 1.00 61.61 O
ATOM 9 C3' A A 839 3.087 21.105 108.396 1.00 61.41 C
ATOM 10 O3' A A 839 2.367 19.937 107.993 1.00 61.17 O
ATOM 11 C2' A A 839 4.512 21.182 107.817 1.00 61.05 C
ATOM 12 O2' A A 839 4.585 20.407 106.629 1.00 60.58 O
ATOM 13 C1' A A 839 4.665 22.666 107.417 1.00 61.26 C
ATOM 14 N9 A A 839 5.635 23.491 108.227 1.00 61.50 N
ATOM 15 C8 A A 839 6.384 24.616 107.750 1.00 61.53 C
ATOM 16 N7 A A 839 7.133 25.304 108.598 1.00 61.81 N
ATOM 17 C5 A A 839 6.837 24.600 109.728 1.00 61.97 C
ATOM 18 C6 A A 839 7.282 24.802 111.016 1.00 62.31 C
ATOM 19 N6 A A 839 8.126 25.750 111.404 1.00 62.53 N
ATOM 20 N1 A A 839 6.794 23.917 111.917 1.00 62.42 N
ATOM 21 C2 A A 839 5.923 22.939 111.559 1.00 62.22 C
ATOM 22 N3 A A 839 5.410 22.646 110.389 1.00 61.91 N
ATOM 23 C4 A A 839 5.917 23.524 109.543 1.00 61.81 C
ATOM 24 P A A 840 2.294 18.583 108.879 1.00 43.53 P
ATOM 25 OP1 A A 840 0.885 18.171 108.912 1.00 43.69 O
ATOM 26 OP2 A A 840 2.998 18.827 110.159 1.00 43.80 O
ATOM 27 O5' A A 840 3.128 17.556 108.009 1.00 42.97 O
TER

ATOM 1 O3' A B 840 6.990 16.696 107.207 1.00 42.03 O
ATOM 2 P U B 841 7.705 17.751 108.195 1.00 42.13 P
ATOM 3 OP1 U B 841 8.676 16.984 108.997 1.00 42.06 O
ATOM 4 OP2 U B 841 6.639 18.500 108.912 1.00 42.61 O
ATOM 5 O5' U B 841 8.480 18.736 107.198 1.00 41.97 O
ATOM 6 C5' U B 841 7.812 19.377 106.114 1.00 41.92 C
ATOM 7 C4' U B 841 8.446 20.710 105.766 1.00 42.02 C
ATOM 8 O4' U B 841 7.954 21.744 106.668 1.00 42.53 O
ATOM 9 C3' U B 841 9.962 20.795 105.895 1.00 41.87 C
ATOM 10 O3' U B 841 10.642 20.299 104.769 1.00 41.41 O
ATOM 11 C2' U B 841 10.191 22.271 106.094 1.00 42.21 C
ATOM 12 O2' U B 841 10.095 22.922 104.850 1.00 42.07 O
ATOM 13 C1' U B 841 8.978 22.670 106.932 1.00 42.66 C
ATOM 14 N1 U B 841 9.253 22.671 108.396 1.00 43.00 N
ATOM 15 C2 U B 841 10.052 23.647 108.977 1.00 43.26 C
ATOM 16 O2 U B 841 10.627 24.516 108.356 1.00 43.23 O
ATOM 17 N3 U B 841 10.210 23.557 110.334 1.00 43.59 N
ATOM 18 C4 U B 841 9.639 22.605 111.161 1.00 43.67 C
ATOM 19 O4 U B 841 9.847 22.663 112.379 1.00 44.00 O
ATOM 20 C5 U B 841 8.842 21.609 110.504 1.00 43.37 C
ATOM 21 C6 U B 841 8.677 21.695 109.181 1.00 43.06 C
ATOM 22 P U B 842 12.106 19.657 104.944 1.00 44.55 P
ATOM 23 OP1 U B 842 12.521 19.132 103.622 1.00 44.08 O
ATOM 24 OP2 U B 842 12.027 18.717 106.087 1.00 44.64 O
ATOM 25 O5' U B 842 13.012 20.907 105.342 1.00 44.79 O
TER

Atoms:
OP1: (-0.486,26.005,107.398)
OP2: (-0.242,25.278,109.889)
C3': (3.087,21.105,108.396)
C1': (4.665,22.666,107.417)
C5': (1.433,22.995,108.747)
O4': (3.422,23.273,107.499)
C8: (6.384,24.616,107.750)
O2': (4.585,20.407,106.629)
C6: (7.282,24.802,111.016)
C5: (6.837,24.600,109.728)
C4: (5.917,23.524,109.543)
P: (0.293,25.302,108.485)
C4': (2.400,22.331,107.844)
C2': (4.512,21.182,107.817)
C2: (5.923,22.939,111.559)
N1: (6.794,23.917,111.917)
N3: (5.410,22.646,110.389)
N6: (8.126,25.750,111.404)
N7: (7.133,25.304,108.598)
N9: (5.635,23.491,108.227)
O5': (0.608,23.842,108.007)
O3': (2.367,19.937,107.993)
C4: (9.639,22.605,111.161)
N3: (10.210,23.557,110.334)
OP1: (8.676,16.984,108.997)
OP2: (6.639,18.500,108.912)
C2: (10.052,23.647,108.977)
C1': (8.978,22.670,106.932)
C3': (9.962,20.795,105.895)
O5': (8.480,18.736,107.198)
O4': (7.954,21.744,106.668)
C5': (7.812,19.377,106.114)
P: (7.705,17.751,108.195)
C4': (8.446,20.710,105.766)
C2': (10.191,22.271,106.094)
O2': (10.095,22.922,104.850)
N1: (9.253,22.671,108.396)
O4: (9.847,22.663,112.379)
O2: (10.627,24.516,108.356)
C6: (8.677,21.695,109.181)
C5: (8.842,21.609,110.504)
O3': (10.642,20.299,104.769)
Image (generated by PyMOL):
PyMOL image
show in jmol