Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VON:C3:C1
Extra
PDB:
ATOM 1 O3' A A 2 37.695 -5.103 -0.515 1.00 35.90 O
ATOM 2 P A A 3 36.673 -5.215 -1.750 1.00 32.51 P
ATOM 3 OP1 A A 3 35.436 -4.513 -1.329 1.00 33.71 O
ATOM 4 OP2 A A 3 37.323 -4.845 -3.027 1.00 35.62 O
ATOM 5 O5' A A 3 36.404 -6.773 -1.757 1.00 32.33 O
ATOM 6 C5' A A 3 37.504 -7.694 -1.680 1.00 26.47 C
ATOM 7 C4' A A 3 36.988 -9.074 -1.391 1.00 25.53 C
ATOM 8 O4' A A 3 36.963 -9.329 0.040 1.00 23.76 O
ATOM 9 C3' A A 3 35.574 -9.315 -1.909 1.00 25.22 C
ATOM 10 O3' A A 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 11 C2' A A 3 34.730 -9.226 -0.641 1.00 24.84 C
ATOM 12 O2' A A 3 33.510 -9.933 -0.702 1.00 26.35 O
ATOM 13 C1' A A 3 35.688 -9.811 0.398 1.00 24.01 C
ATOM 14 N9 A A 3 35.398 -9.453 1.787 1.00 22.28 N
ATOM 15 C8 A A 3 35.016 -8.236 2.305 1.00 22.20 C
ATOM 16 N7 A A 3 34.749 -8.270 3.589 1.00 21.63 N
ATOM 17 C5 A A 3 34.986 -9.591 3.947 1.00 21.25 C
ATOM 18 C6 A A 3 34.864 -10.279 5.169 1.00 23.52 C
ATOM 19 N6 A A 3 34.441 -9.709 6.304 1.00 25.82 N
ATOM 20 N1 A A 3 35.188 -11.592 5.188 1.00 23.25 N
ATOM 21 C2 A A 3 35.597 -12.167 4.050 1.00 22.30 C
ATOM 22 N3 A A 3 35.741 -11.630 2.839 1.00 23.70 N
ATOM 23 C4 A A 3 35.412 -10.325 2.854 1.00 23.10 C
ATOM 24 P U A 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 25 OP1 U A 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 26 OP2 U A 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 27 O5' U A 4 33.653 -10.160 -4.169 1.00 21.88 O
TER
ATOM 1 P U B 1 42.094 -8.834 1.951 1.00 25.59 P
ATOM 2 OP1 U B 1 41.598 -9.979 1.152 1.00 26.97 O
ATOM 3 OP2 U B 1 43.053 -9.072 3.057 1.00 26.87 O
ATOM 4 O5' U B 1 40.827 -8.080 2.560 1.00 24.76 O
ATOM 5 C5' U B 1 39.814 -7.503 1.702 1.00 25.47 C
ATOM 6 C4' U B 1 38.751 -6.824 2.539 1.00 26.41 C
ATOM 7 O4' U B 1 38.015 -7.834 3.279 1.00 24.38 O
ATOM 8 C3' U B 1 39.300 -5.843 3.571 1.00 26.41 C
ATOM 9 O3' U B 1 38.366 -4.777 3.733 1.00 28.46 O
ATOM 10 C2' U B 1 39.357 -6.687 4.843 1.00 26.31 C
ATOM 11 O2' U B 1 39.274 -5.925 6.028 1.00 26.89 O
ATOM 12 C1' U B 1 38.135 -7.593 4.668 1.00 26.03 C
ATOM 13 N1 U B 1 38.227 -8.890 5.356 1.00 23.29 N
ATOM 14 C2 U B 1 37.623 -9.013 6.598 1.00 24.84 C
ATOM 15 O2 U B 1 37.021 -8.098 7.143 1.00 24.22 O
ATOM 16 N3 U B 1 37.746 -10.251 7.180 1.00 25.51 N
ATOM 17 C4 U B 1 38.395 -11.355 6.659 1.00 27.11 C
ATOM 18 O4 U B 1 38.458 -12.393 7.321 1.00 26.59 O
ATOM 19 C5 U B 1 38.986 -11.147 5.374 1.00 25.21 C
ATOM 20 C6 U B 1 38.886 -9.953 4.784 1.00 25.28 C
ATOM 21 P A B 2 38.865 -3.251 3.655 1.00 30.58 P
ATOM 22 OP1 A B 2 37.748 -2.405 4.155 1.00 28.23 O
ATOM 23 OP2 A B 2 40.208 -3.152 4.286 1.00 32.25 O
ATOM 24 O5' A B 2 39.037 -2.965 2.100 1.00 30.32 O
TER
ATOM 2 P A A 3 36.673 -5.215 -1.750 1.00 32.51 P
ATOM 3 OP1 A A 3 35.436 -4.513 -1.329 1.00 33.71 O
ATOM 4 OP2 A A 3 37.323 -4.845 -3.027 1.00 35.62 O
ATOM 5 O5' A A 3 36.404 -6.773 -1.757 1.00 32.33 O
ATOM 6 C5' A A 3 37.504 -7.694 -1.680 1.00 26.47 C
ATOM 7 C4' A A 3 36.988 -9.074 -1.391 1.00 25.53 C
ATOM 8 O4' A A 3 36.963 -9.329 0.040 1.00 23.76 O
ATOM 9 C3' A A 3 35.574 -9.315 -1.909 1.00 25.22 C
ATOM 10 O3' A A 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 11 C2' A A 3 34.730 -9.226 -0.641 1.00 24.84 C
ATOM 12 O2' A A 3 33.510 -9.933 -0.702 1.00 26.35 O
ATOM 13 C1' A A 3 35.688 -9.811 0.398 1.00 24.01 C
ATOM 14 N9 A A 3 35.398 -9.453 1.787 1.00 22.28 N
ATOM 15 C8 A A 3 35.016 -8.236 2.305 1.00 22.20 C
ATOM 16 N7 A A 3 34.749 -8.270 3.589 1.00 21.63 N
ATOM 17 C5 A A 3 34.986 -9.591 3.947 1.00 21.25 C
ATOM 18 C6 A A 3 34.864 -10.279 5.169 1.00 23.52 C
ATOM 19 N6 A A 3 34.441 -9.709 6.304 1.00 25.82 N
ATOM 20 N1 A A 3 35.188 -11.592 5.188 1.00 23.25 N
ATOM 21 C2 A A 3 35.597 -12.167 4.050 1.00 22.30 C
ATOM 22 N3 A A 3 35.741 -11.630 2.839 1.00 23.70 N
ATOM 23 C4 A A 3 35.412 -10.325 2.854 1.00 23.10 C
ATOM 24 P U A 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 25 OP1 U A 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 26 OP2 U A 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 27 O5' U A 4 33.653 -10.160 -4.169 1.00 21.88 O
TER
ATOM 1 P U B 1 42.094 -8.834 1.951 1.00 25.59 P
ATOM 2 OP1 U B 1 41.598 -9.979 1.152 1.00 26.97 O
ATOM 3 OP2 U B 1 43.053 -9.072 3.057 1.00 26.87 O
ATOM 4 O5' U B 1 40.827 -8.080 2.560 1.00 24.76 O
ATOM 5 C5' U B 1 39.814 -7.503 1.702 1.00 25.47 C
ATOM 6 C4' U B 1 38.751 -6.824 2.539 1.00 26.41 C
ATOM 7 O4' U B 1 38.015 -7.834 3.279 1.00 24.38 O
ATOM 8 C3' U B 1 39.300 -5.843 3.571 1.00 26.41 C
ATOM 9 O3' U B 1 38.366 -4.777 3.733 1.00 28.46 O
ATOM 10 C2' U B 1 39.357 -6.687 4.843 1.00 26.31 C
ATOM 11 O2' U B 1 39.274 -5.925 6.028 1.00 26.89 O
ATOM 12 C1' U B 1 38.135 -7.593 4.668 1.00 26.03 C
ATOM 13 N1 U B 1 38.227 -8.890 5.356 1.00 23.29 N
ATOM 14 C2 U B 1 37.623 -9.013 6.598 1.00 24.84 C
ATOM 15 O2 U B 1 37.021 -8.098 7.143 1.00 24.22 O
ATOM 16 N3 U B 1 37.746 -10.251 7.180 1.00 25.51 N
ATOM 17 C4 U B 1 38.395 -11.355 6.659 1.00 27.11 C
ATOM 18 O4 U B 1 38.458 -12.393 7.321 1.00 26.59 O
ATOM 19 C5 U B 1 38.986 -11.147 5.374 1.00 25.21 C
ATOM 20 C6 U B 1 38.886 -9.953 4.784 1.00 25.28 C
ATOM 21 P A B 2 38.865 -3.251 3.655 1.00 30.58 P
ATOM 22 OP1 A B 2 37.748 -2.405 4.155 1.00 28.23 O
ATOM 23 OP2 A B 2 40.208 -3.152 4.286 1.00 32.25 O
ATOM 24 O5' A B 2 39.037 -2.965 2.100 1.00 30.32 O
TER
Atoms:
OP1: (35.436,-4.513,-1.329)
OP2: (37.323,-4.845,-3.027)
C3': (35.574,-9.315,-1.909)
C1': (35.688,-9.811,0.398)
C5': (37.504,-7.694,-1.680)
O4': (36.963,-9.329,0.040)
C8: (35.016,-8.236,2.305)
O2': (33.510,-9.933,-0.702)
C6: (34.864,-10.279,5.169)
C5: (34.986,-9.591,3.947)
C4: (35.412,-10.325,2.854)
P: (36.673,-5.215,-1.750)
C4': (36.988,-9.074,-1.391)
C2': (34.730,-9.226,-0.641)
C2: (35.597,-12.167,4.050)
N1: (35.188,-11.592,5.188)
N3: (35.741,-11.630,2.839)
N6: (34.441,-9.709,6.304)
N7: (34.749,-8.270,3.589)
N9: (35.398,-9.453,1.787)
O5': (36.404,-6.773,-1.757)
O3': (35.484,-10.599,-2.511)
OP2: (37.323,-4.845,-3.027)
C3': (35.574,-9.315,-1.909)
C1': (35.688,-9.811,0.398)
C5': (37.504,-7.694,-1.680)
O4': (36.963,-9.329,0.040)
C8: (35.016,-8.236,2.305)
O2': (33.510,-9.933,-0.702)
C6: (34.864,-10.279,5.169)
C5: (34.986,-9.591,3.947)
C4: (35.412,-10.325,2.854)
P: (36.673,-5.215,-1.750)
C4': (36.988,-9.074,-1.391)
C2': (34.730,-9.226,-0.641)
C2: (35.597,-12.167,4.050)
N1: (35.188,-11.592,5.188)
N3: (35.741,-11.630,2.839)
N6: (34.441,-9.709,6.304)
N7: (34.749,-8.270,3.589)
N9: (35.398,-9.453,1.787)
O5': (36.404,-6.773,-1.757)
O3': (35.484,-10.599,-2.511)
C4: (38.395,-11.355,6.659)
N3: (37.746,-10.251,7.180)
OP1: (41.598,-9.979,1.152)
OP2: (43.053,-9.072,3.057)
C2: (37.623,-9.013,6.598)
C1': (38.135,-7.593,4.668)
C3': (39.300,-5.843,3.571)
O5': (40.827,-8.080,2.560)
O4': (38.015,-7.834,3.279)
C5': (39.814,-7.503,1.702)
P: (42.094,-8.834,1.951)
C4': (38.751,-6.824,2.539)
C2': (39.357,-6.687,4.843)
O2': (39.274,-5.925,6.028)
N1: (38.227,-8.890,5.356)
O4: (38.458,-12.393,7.321)
O2: (37.021,-8.098,7.143)
C6: (38.886,-9.953,4.784)
C5: (38.986,-11.147,5.374)
O3': (38.366,-4.777,3.733)
N3: (37.746,-10.251,7.180)
OP1: (41.598,-9.979,1.152)
OP2: (43.053,-9.072,3.057)
C2: (37.623,-9.013,6.598)
C1': (38.135,-7.593,4.668)
C3': (39.300,-5.843,3.571)
O5': (40.827,-8.080,2.560)
O4': (38.015,-7.834,3.279)
C5': (39.814,-7.503,1.702)
P: (42.094,-8.834,1.951)
C4': (38.751,-6.824,2.539)
C2': (39.357,-6.687,4.843)
O2': (39.274,-5.925,6.028)
N1: (38.227,-8.890,5.356)
O4: (38.458,-12.393,7.321)
O2: (37.021,-8.098,7.143)
C6: (38.886,-9.953,4.784)
C5: (38.986,-11.147,5.374)
O3': (38.366,-4.777,3.733)
Image (generated by PyMOL):