Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12389:1939
Extra
PDB:
ATOM 1 O3' A A2388 36.665 -36.199 32.001 1.00 41.05 O
ATOM 2 P A A2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 3 OP1 A A2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 4 OP2 A A2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 5 O5' A A2389 36.055 -38.636 31.764 1.00 45.14 O
ATOM 6 C5' A A2389 35.431 -39.390 32.795 1.00 45.09 C
ATOM 7 C4' A A2389 35.426 -40.872 32.511 1.00 45.46 C
ATOM 8 O4' A A2389 35.038 -41.130 31.141 1.00 45.85 O
ATOM 9 C3' A A2389 36.742 -41.597 32.637 1.00 45.53 C
ATOM 10 O3' A A2389 37.144 -41.814 33.980 1.00 45.27 O
ATOM 11 C2' A A2389 36.440 -42.879 31.902 1.00 45.99 C
ATOM 12 O2' A A2389 35.637 -43.712 32.693 1.00 46.03 O
ATOM 13 C1' A A2389 35.614 -42.355 30.724 1.00 46.18 C
ATOM 14 N9 A A2389 36.497 -42.110 29.566 1.00 46.37 N
ATOM 15 C8 A A2389 37.067 -40.932 29.227 1.00 46.17 C
ATOM 16 N7 A A2389 37.872 -41.012 28.221 1.00 46.40 N
ATOM 17 C5 A A2389 37.883 -42.339 27.893 1.00 46.78 C
ATOM 18 C6 A A2389 38.591 -43.024 26.897 1.00 47.16 C
ATOM 19 N6 A A2389 39.428 -42.406 26.048 1.00 47.21 N
ATOM 20 N1 A A2389 38.387 -44.348 26.789 1.00 47.50 N
ATOM 21 C2 A A2389 37.519 -44.889 27.645 1.00 47.44 C
ATOM 22 N3 A A2389 36.822 -44.339 28.637 1.00 47.09 N
ATOM 23 C4 A A2389 37.053 -43.031 28.713 1.00 46.76 C
ATOM 24 P C A2390 38.645 -41.434 34.483 1.00 40.27 P
ATOM 25 OP1 C A2390 38.492 -40.224 35.357 1.00 39.84 O
ATOM 26 OP2 C A2390 39.508 -41.327 33.277 1.00 40.48 O
ATOM 27 O5' C A2390 39.066 -42.695 35.370 1.00 40.35 O
TER
ATOM 1 O3' G B 938 29.940 -42.955 31.099 1.00 42.47 O
ATOM 2 P U B 939 29.344 -41.861 32.108 1.00 48.37 P
ATOM 3 OP1 U B 939 29.524 -42.383 33.473 1.00 48.16 O
ATOM 4 OP2 U B 939 27.976 -41.533 31.657 1.00 48.51 O
ATOM 5 O5' U B 939 30.284 -40.619 31.868 1.00 48.09 O
ATOM 6 C5' U B 939 30.198 -39.885 30.672 1.00 48.23 C
ATOM 7 C4' U B 939 31.156 -38.738 30.655 1.00 47.94 C
ATOM 8 O4' U B 939 32.519 -39.228 30.756 1.00 47.93 O
ATOM 9 C3' U B 939 31.138 -37.934 29.390 1.00 48.09 C
ATOM 10 O3' U B 939 30.140 -36.942 29.407 1.00 47.97 O
ATOM 11 C2' U B 939 32.545 -37.393 29.315 1.00 47.91 C
ATOM 12 O2' U B 939 32.689 -36.347 30.228 1.00 47.49 O
ATOM 13 C1' U B 939 33.340 -38.572 29.840 1.00 47.97 C
ATOM 14 N1 U B 939 33.692 -39.545 28.772 1.00 48.40 N
ATOM 15 C2 U B 939 34.616 -39.225 27.820 1.00 48.53 C
ATOM 16 O2 U B 939 35.149 -38.145 27.820 1.00 48.28 O
ATOM 17 N3 U B 939 34.896 -40.191 26.895 1.00 48.95 N
ATOM 18 C4 U B 939 34.338 -41.443 26.814 1.00 49.26 C
ATOM 19 O4 U B 939 34.690 -42.222 25.926 1.00 49.65 O
ATOM 20 C5 U B 939 33.396 -41.744 27.829 1.00 49.12 C
ATOM 21 C6 U B 939 33.130 -40.806 28.740 1.00 48.70 C
ATOM 22 P A B 940 29.340 -36.622 28.077 1.00 43.01 P
ATOM 23 OP1 A B 940 28.405 -35.577 28.379 1.00 42.82 O
ATOM 24 OP2 A B 940 28.817 -37.910 27.530 1.00 43.43 O
ATOM 25 O5' A B 940 30.483 -36.074 27.142 1.00 43.06 O
TER
ATOM 2 P A A2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 3 OP1 A A2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 4 OP2 A A2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 5 O5' A A2389 36.055 -38.636 31.764 1.00 45.14 O
ATOM 6 C5' A A2389 35.431 -39.390 32.795 1.00 45.09 C
ATOM 7 C4' A A2389 35.426 -40.872 32.511 1.00 45.46 C
ATOM 8 O4' A A2389 35.038 -41.130 31.141 1.00 45.85 O
ATOM 9 C3' A A2389 36.742 -41.597 32.637 1.00 45.53 C
ATOM 10 O3' A A2389 37.144 -41.814 33.980 1.00 45.27 O
ATOM 11 C2' A A2389 36.440 -42.879 31.902 1.00 45.99 C
ATOM 12 O2' A A2389 35.637 -43.712 32.693 1.00 46.03 O
ATOM 13 C1' A A2389 35.614 -42.355 30.724 1.00 46.18 C
ATOM 14 N9 A A2389 36.497 -42.110 29.566 1.00 46.37 N
ATOM 15 C8 A A2389 37.067 -40.932 29.227 1.00 46.17 C
ATOM 16 N7 A A2389 37.872 -41.012 28.221 1.00 46.40 N
ATOM 17 C5 A A2389 37.883 -42.339 27.893 1.00 46.78 C
ATOM 18 C6 A A2389 38.591 -43.024 26.897 1.00 47.16 C
ATOM 19 N6 A A2389 39.428 -42.406 26.048 1.00 47.21 N
ATOM 20 N1 A A2389 38.387 -44.348 26.789 1.00 47.50 N
ATOM 21 C2 A A2389 37.519 -44.889 27.645 1.00 47.44 C
ATOM 22 N3 A A2389 36.822 -44.339 28.637 1.00 47.09 N
ATOM 23 C4 A A2389 37.053 -43.031 28.713 1.00 46.76 C
ATOM 24 P C A2390 38.645 -41.434 34.483 1.00 40.27 P
ATOM 25 OP1 C A2390 38.492 -40.224 35.357 1.00 39.84 O
ATOM 26 OP2 C A2390 39.508 -41.327 33.277 1.00 40.48 O
ATOM 27 O5' C A2390 39.066 -42.695 35.370 1.00 40.35 O
TER
ATOM 1 O3' G B 938 29.940 -42.955 31.099 1.00 42.47 O
ATOM 2 P U B 939 29.344 -41.861 32.108 1.00 48.37 P
ATOM 3 OP1 U B 939 29.524 -42.383 33.473 1.00 48.16 O
ATOM 4 OP2 U B 939 27.976 -41.533 31.657 1.00 48.51 O
ATOM 5 O5' U B 939 30.284 -40.619 31.868 1.00 48.09 O
ATOM 6 C5' U B 939 30.198 -39.885 30.672 1.00 48.23 C
ATOM 7 C4' U B 939 31.156 -38.738 30.655 1.00 47.94 C
ATOM 8 O4' U B 939 32.519 -39.228 30.756 1.00 47.93 O
ATOM 9 C3' U B 939 31.138 -37.934 29.390 1.00 48.09 C
ATOM 10 O3' U B 939 30.140 -36.942 29.407 1.00 47.97 O
ATOM 11 C2' U B 939 32.545 -37.393 29.315 1.00 47.91 C
ATOM 12 O2' U B 939 32.689 -36.347 30.228 1.00 47.49 O
ATOM 13 C1' U B 939 33.340 -38.572 29.840 1.00 47.97 C
ATOM 14 N1 U B 939 33.692 -39.545 28.772 1.00 48.40 N
ATOM 15 C2 U B 939 34.616 -39.225 27.820 1.00 48.53 C
ATOM 16 O2 U B 939 35.149 -38.145 27.820 1.00 48.28 O
ATOM 17 N3 U B 939 34.896 -40.191 26.895 1.00 48.95 N
ATOM 18 C4 U B 939 34.338 -41.443 26.814 1.00 49.26 C
ATOM 19 O4 U B 939 34.690 -42.222 25.926 1.00 49.65 O
ATOM 20 C5 U B 939 33.396 -41.744 27.829 1.00 49.12 C
ATOM 21 C6 U B 939 33.130 -40.806 28.740 1.00 48.70 C
ATOM 22 P A B 940 29.340 -36.622 28.077 1.00 43.01 P
ATOM 23 OP1 A B 940 28.405 -35.577 28.379 1.00 42.82 O
ATOM 24 OP2 A B 940 28.817 -37.910 27.530 1.00 43.43 O
ATOM 25 O5' A B 940 30.483 -36.074 27.142 1.00 43.06 O
TER
Atoms:
OP1: (37.686,-37.864,33.496)
OP2: (38.322,-37.774,31.026)
C3': (36.742,-41.597,32.637)
C1': (35.614,-42.355,30.724)
C5': (35.431,-39.390,32.795)
O4': (35.038,-41.130,31.141)
C8: (37.067,-40.932,29.227)
O2': (35.637,-43.712,32.693)
C6: (38.591,-43.024,26.897)
C5: (37.883,-42.339,27.893)
C4: (37.053,-43.031,28.713)
P: (37.283,-37.667,32.094)
C4': (35.426,-40.872,32.511)
C2': (36.440,-42.879,31.902)
C2: (37.519,-44.889,27.645)
N1: (38.387,-44.348,26.789)
N3: (36.822,-44.339,28.637)
N6: (39.428,-42.406,26.048)
N7: (37.872,-41.012,28.221)
N9: (36.497,-42.110,29.566)
O5': (36.055,-38.636,31.764)
O3': (37.144,-41.814,33.980)
OP2: (38.322,-37.774,31.026)
C3': (36.742,-41.597,32.637)
C1': (35.614,-42.355,30.724)
C5': (35.431,-39.390,32.795)
O4': (35.038,-41.130,31.141)
C8: (37.067,-40.932,29.227)
O2': (35.637,-43.712,32.693)
C6: (38.591,-43.024,26.897)
C5: (37.883,-42.339,27.893)
C4: (37.053,-43.031,28.713)
P: (37.283,-37.667,32.094)
C4': (35.426,-40.872,32.511)
C2': (36.440,-42.879,31.902)
C2: (37.519,-44.889,27.645)
N1: (38.387,-44.348,26.789)
N3: (36.822,-44.339,28.637)
N6: (39.428,-42.406,26.048)
N7: (37.872,-41.012,28.221)
N9: (36.497,-42.110,29.566)
O5': (36.055,-38.636,31.764)
O3': (37.144,-41.814,33.980)
C4: (34.338,-41.443,26.814)
N3: (34.896,-40.191,26.895)
OP1: (29.524,-42.383,33.473)
OP2: (27.976,-41.533,31.657)
C2: (34.616,-39.225,27.820)
C1': (33.340,-38.572,29.840)
C3': (31.138,-37.934,29.390)
O5': (30.284,-40.619,31.868)
O4': (32.519,-39.228,30.756)
C5': (30.198,-39.885,30.672)
P: (29.344,-41.861,32.108)
C4': (31.156,-38.738,30.655)
C2': (32.545,-37.393,29.315)
O2': (32.689,-36.347,30.228)
N1: (33.692,-39.545,28.772)
O4: (34.690,-42.222,25.926)
O2: (35.149,-38.145,27.820)
C6: (33.130,-40.806,28.740)
C5: (33.396,-41.744,27.829)
O3': (30.140,-36.942,29.407)
N3: (34.896,-40.191,26.895)
OP1: (29.524,-42.383,33.473)
OP2: (27.976,-41.533,31.657)
C2: (34.616,-39.225,27.820)
C1': (33.340,-38.572,29.840)
C3': (31.138,-37.934,29.390)
O5': (30.284,-40.619,31.868)
O4': (32.519,-39.228,30.756)
C5': (30.198,-39.885,30.672)
P: (29.344,-41.861,32.108)
C4': (31.156,-38.738,30.655)
C2': (32.545,-37.393,29.315)
O2': (32.689,-36.347,30.228)
N1: (33.692,-39.545,28.772)
O4: (34.690,-42.222,25.926)
O2: (35.149,-38.145,27.820)
C6: (33.130,-40.806,28.740)
C5: (33.396,-41.744,27.829)
O3': (30.140,-36.942,29.407)
Image (generated by PyMOL):