Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0552:0551
Extra
PDB:
ATOM 1 O3' C A 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 2 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 3 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 4 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 5 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
ATOM 6 C5' G A 552 -8.184 95.603 94.941 1.00 57.37 C
ATOM 7 C4' G A 552 -7.088 96.350 95.661 1.00 55.99 C
ATOM 8 O4' G A 552 -7.547 97.682 96.007 1.00 57.31 O
ATOM 9 C3' G A 552 -6.640 95.761 96.985 1.00 54.52 C
ATOM 10 O3' G A 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 11 C2' G A 552 -5.999 96.965 97.667 1.00 55.45 C
ATOM 12 O2' G A 552 -4.685 97.210 97.221 1.00 56.93 O
ATOM 13 C1' G A 552 -6.906 98.108 97.196 1.00 57.90 C
ATOM 14 N9 G A 552 -7.926 98.486 98.169 1.00 61.58 N
ATOM 15 C8 G A 552 -9.076 97.797 98.473 1.00 63.62 C
ATOM 16 N7 G A 552 -9.761 98.346 99.440 1.00 65.59 N
ATOM 17 C5 G A 552 -9.028 99.473 99.786 1.00 65.16 C
ATOM 18 C6 G A 552 -9.265 100.453 100.791 1.00 66.55 C
ATOM 19 O6 G A 552 -10.189 100.511 101.615 1.00 67.84 O
ATOM 20 N1 G A 552 -8.280 101.430 100.790 1.00 66.81 N
ATOM 21 C2 G A 552 -7.201 101.462 99.945 1.00 66.80 C
ATOM 22 N2 G A 552 -6.370 102.499 100.105 1.00 68.22 N
ATOM 23 N3 G A 552 -6.957 100.550 99.016 1.00 64.94 N
ATOM 24 C4 G A 552 -7.906 99.590 98.994 1.00 63.56 C
ATOM 25 P A A 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 26 OP1 A A 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 27 OP2 A A 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 28 O5' A A 553 -3.639 93.675 97.679 1.00 52.35 O
TER
ATOM 1 O3' A B 550 -15.827 99.626 95.758 1.00 56.14 O
ATOM 2 P C B 551 -14.993 98.496 96.529 1.00 57.00 P
ATOM 3 OP1 C B 551 -15.688 97.195 96.344 1.00 58.09 O
ATOM 4 OP2 C B 551 -14.714 98.997 97.897 1.00 54.86 O
ATOM 5 O5' C B 551 -13.628 98.414 95.719 1.00 58.18 O
ATOM 6 C5' C B 551 -13.623 98.056 94.329 1.00 57.26 C
ATOM 7 C4' C B 551 -12.256 98.293 93.737 1.00 57.74 C
ATOM 8 O4' C B 551 -11.936 99.707 93.787 1.00 56.72 O
ATOM 9 C3' C B 551 -11.096 97.633 94.462 1.00 57.18 C
ATOM 10 O3' C B 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 11 C2' C B 551 -9.913 98.468 93.986 1.00 56.99 C
ATOM 12 O2' C B 551 -9.488 98.103 92.688 1.00 57.97 O
ATOM 13 C1' C B 551 -10.534 99.866 93.917 1.00 56.54 C
ATOM 14 N1 C B 551 -10.255 100.727 95.080 1.00 57.52 N
ATOM 15 C2 C B 551 -9.093 101.511 95.072 1.00 57.56 C
ATOM 16 O2 C B 551 -8.335 101.456 94.088 1.00 58.59 O
ATOM 17 N3 C B 551 -8.826 102.309 96.134 1.00 56.59 N
ATOM 18 C4 C B 551 -9.662 102.338 97.172 1.00 56.64 C
ATOM 19 N4 C B 551 -9.355 103.130 98.202 1.00 56.29 N
ATOM 20 C5 C B 551 -10.851 101.555 97.205 1.00 56.86 C
ATOM 21 C6 C B 551 -11.106 100.770 96.150 1.00 57.47 C
ATOM 22 P G B 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 23 OP1 G B 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 24 OP2 G B 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 25 O5' G B 552 -9.329 95.444 95.803 1.00 59.62 O
TER
ATOM 2 P G A 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 3 OP1 G A 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 4 OP2 G A 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 5 O5' G A 552 -9.329 95.444 95.803 1.00 59.62 O
ATOM 6 C5' G A 552 -8.184 95.603 94.941 1.00 57.37 C
ATOM 7 C4' G A 552 -7.088 96.350 95.661 1.00 55.99 C
ATOM 8 O4' G A 552 -7.547 97.682 96.007 1.00 57.31 O
ATOM 9 C3' G A 552 -6.640 95.761 96.985 1.00 54.52 C
ATOM 10 O3' G A 552 -5.722 94.699 96.748 1.00 51.06 O
ATOM 11 C2' G A 552 -5.999 96.965 97.667 1.00 55.45 C
ATOM 12 O2' G A 552 -4.685 97.210 97.221 1.00 56.93 O
ATOM 13 C1' G A 552 -6.906 98.108 97.196 1.00 57.90 C
ATOM 14 N9 G A 552 -7.926 98.486 98.169 1.00 61.58 N
ATOM 15 C8 G A 552 -9.076 97.797 98.473 1.00 63.62 C
ATOM 16 N7 G A 552 -9.761 98.346 99.440 1.00 65.59 N
ATOM 17 C5 G A 552 -9.028 99.473 99.786 1.00 65.16 C
ATOM 18 C6 G A 552 -9.265 100.453 100.791 1.00 66.55 C
ATOM 19 O6 G A 552 -10.189 100.511 101.615 1.00 67.84 O
ATOM 20 N1 G A 552 -8.280 101.430 100.790 1.00 66.81 N
ATOM 21 C2 G A 552 -7.201 101.462 99.945 1.00 66.80 C
ATOM 22 N2 G A 552 -6.370 102.499 100.105 1.00 68.22 N
ATOM 23 N3 G A 552 -6.957 100.550 99.016 1.00 64.94 N
ATOM 24 C4 G A 552 -7.906 99.590 98.994 1.00 63.56 C
ATOM 25 P A A 553 -5.200 93.784 97.968 1.00 52.97 P
ATOM 26 OP1 A A 553 -5.738 92.412 97.772 1.00 49.89 O
ATOM 27 OP2 A A 553 -5.399 94.479 99.273 1.00 49.07 O
ATOM 28 O5' A A 553 -3.639 93.675 97.679 1.00 52.35 O
TER
ATOM 1 O3' A B 550 -15.827 99.626 95.758 1.00 56.14 O
ATOM 2 P C B 551 -14.993 98.496 96.529 1.00 57.00 P
ATOM 3 OP1 C B 551 -15.688 97.195 96.344 1.00 58.09 O
ATOM 4 OP2 C B 551 -14.714 98.997 97.897 1.00 54.86 O
ATOM 5 O5' C B 551 -13.628 98.414 95.719 1.00 58.18 O
ATOM 6 C5' C B 551 -13.623 98.056 94.329 1.00 57.26 C
ATOM 7 C4' C B 551 -12.256 98.293 93.737 1.00 57.74 C
ATOM 8 O4' C B 551 -11.936 99.707 93.787 1.00 56.72 O
ATOM 9 C3' C B 551 -11.096 97.633 94.462 1.00 57.18 C
ATOM 10 O3' C B 551 -10.975 96.264 94.079 1.00 56.79 O
ATOM 11 C2' C B 551 -9.913 98.468 93.986 1.00 56.99 C
ATOM 12 O2' C B 551 -9.488 98.103 92.688 1.00 57.97 O
ATOM 13 C1' C B 551 -10.534 99.866 93.917 1.00 56.54 C
ATOM 14 N1 C B 551 -10.255 100.727 95.080 1.00 57.52 N
ATOM 15 C2 C B 551 -9.093 101.511 95.072 1.00 57.56 C
ATOM 16 O2 C B 551 -8.335 101.456 94.088 1.00 58.59 O
ATOM 17 N3 C B 551 -8.826 102.309 96.134 1.00 56.59 N
ATOM 18 C4 C B 551 -9.662 102.338 97.172 1.00 56.64 C
ATOM 19 N4 C B 551 -9.355 103.130 98.202 1.00 56.29 N
ATOM 20 C5 C B 551 -10.851 101.555 97.205 1.00 56.86 C
ATOM 21 C6 C B 551 -11.106 100.770 96.150 1.00 57.47 C
ATOM 22 P G B 552 -10.773 95.135 95.203 1.00 57.63 P
ATOM 23 OP1 G B 552 -10.735 93.817 94.517 1.00 56.25 O
ATOM 24 OP2 G B 552 -11.752 95.368 96.293 1.00 58.79 O
ATOM 25 O5' G B 552 -9.329 95.444 95.803 1.00 59.62 O
TER
Atoms:
OP1: (-10.735,93.817,94.517)
OP2: (-11.752,95.368,96.293)
C3': (-6.640,95.761,96.985)
C1': (-6.906,98.108,97.196)
C5': (-8.184,95.603,94.941)
O6: (-10.189,100.511,101.615)
O4': (-7.547,97.682,96.007)
C8: (-9.076,97.797,98.473)
C2: (-7.201,101.462,99.945)
C6: (-9.265,100.453,100.791)
C5: (-9.028,99.473,99.786)
C4: (-7.906,99.590,98.994)
P: (-10.773,95.135,95.203)
C4': (-7.088,96.350,95.661)
C2': (-5.999,96.965,97.667)
O2': (-4.685,97.210,97.221)
N1: (-8.280,101.430,100.790)
N2: (-6.370,102.499,100.105)
N3: (-6.957,100.550,99.016)
N7: (-9.761,98.346,99.440)
N9: (-7.926,98.486,98.169)
O5': (-9.329,95.444,95.803)
O3': (-5.722,94.699,96.748)
OP2: (-11.752,95.368,96.293)
C3': (-6.640,95.761,96.985)
C1': (-6.906,98.108,97.196)
C5': (-8.184,95.603,94.941)
O6: (-10.189,100.511,101.615)
O4': (-7.547,97.682,96.007)
C8: (-9.076,97.797,98.473)
C2: (-7.201,101.462,99.945)
C6: (-9.265,100.453,100.791)
C5: (-9.028,99.473,99.786)
C4: (-7.906,99.590,98.994)
P: (-10.773,95.135,95.203)
C4': (-7.088,96.350,95.661)
C2': (-5.999,96.965,97.667)
O2': (-4.685,97.210,97.221)
N1: (-8.280,101.430,100.790)
N2: (-6.370,102.499,100.105)
N3: (-6.957,100.550,99.016)
N7: (-9.761,98.346,99.440)
N9: (-7.926,98.486,98.169)
O5': (-9.329,95.444,95.803)
O3': (-5.722,94.699,96.748)
C2: (-9.093,101.511,95.072)
OP1: (-15.688,97.195,96.344)
OP2: (-14.714,98.997,97.897)
C4: (-9.662,102.338,97.172)
O5': (-13.628,98.414,95.719)
C3': (-11.096,97.633,94.462)
C1': (-10.534,99.866,93.917)
O4': (-11.936,99.707,93.787)
C5': (-13.623,98.056,94.329)
P: (-14.993,98.496,96.529)
O2: (-8.335,101.456,94.088)
C4': (-12.256,98.293,93.737)
C2': (-9.913,98.468,93.986)
O2': (-9.488,98.103,92.688)
N1: (-10.255,100.727,95.080)
N3: (-8.826,102.309,96.134)
N4: (-9.355,103.130,98.202)
C6: (-11.106,100.770,96.150)
C5: (-10.851,101.555,97.205)
O3': (-10.975,96.264,94.079)
OP1: (-15.688,97.195,96.344)
OP2: (-14.714,98.997,97.897)
C4: (-9.662,102.338,97.172)
O5': (-13.628,98.414,95.719)
C3': (-11.096,97.633,94.462)
C1': (-10.534,99.866,93.917)
O4': (-11.936,99.707,93.787)
C5': (-13.623,98.056,94.329)
P: (-14.993,98.496,96.529)
O2: (-8.335,101.456,94.088)
C4': (-12.256,98.293,93.737)
C2': (-9.913,98.468,93.986)
O2': (-9.488,98.103,92.688)
N1: (-10.255,100.727,95.080)
N3: (-8.826,102.309,96.134)
N4: (-9.355,103.130,98.202)
C6: (-11.106,100.770,96.150)
C5: (-10.851,101.555,97.205)
O3': (-10.975,96.264,94.079)
Image (generated by PyMOL):