Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBR:C9:C11
Extra
PDB:
ATOM 1 O3' C A 8 25.070 1.692 -9.928 1.00 54.90 O
ATOM 2 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A A 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A A 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A A 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A A 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A A 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A A 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A A 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A A 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A A 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A A 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A A 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A A 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A A 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A A 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A A 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A A 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A A 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A A 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G A 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G A 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G A 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G A 10 17.071 3.919 -6.794 1.00 62.63 O
TER
ATOM 1 O3' G B 10 17.636 0.528 -4.442 1.00 65.07 O
ATOM 2 P U B 11 16.939 -0.914 -4.395 1.00 65.11 P
ATOM 3 OP1 U B 11 15.789 -0.832 -5.332 1.00 65.78 O
ATOM 4 OP2 U B 11 16.705 -1.272 -2.976 1.00 64.03 O
ATOM 5 O5' U B 11 18.010 -1.928 -4.987 1.00 61.54 O
ATOM 6 C5' U B 11 18.213 -2.022 -6.383 1.00 63.71 C
ATOM 7 C4' U B 11 19.684 -2.130 -6.683 1.00 65.82 C
ATOM 8 O4' U B 11 20.369 -0.912 -6.293 1.00 65.34 O
ATOM 9 C3' U B 11 20.416 -3.219 -5.926 1.00 65.29 C
ATOM 10 O3' U B 11 20.225 -4.452 -6.597 1.00 68.38 O
ATOM 11 C2' U B 11 21.864 -2.744 -5.994 1.00 65.27 C
ATOM 12 O2' U B 11 22.526 -3.094 -7.195 1.00 66.79 O
ATOM 13 C1' U B 11 21.697 -1.224 -5.902 1.00 63.20 C
ATOM 14 N1 U B 11 21.956 -0.645 -4.571 1.00 59.16 N
ATOM 15 C2 U B 11 23.232 -0.764 -4.053 1.00 55.74 C
ATOM 16 O2 U B 11 24.133 -1.348 -4.633 1.00 53.48 O
ATOM 17 N3 U B 11 23.419 -0.169 -2.833 1.00 53.58 N
ATOM 18 C4 U B 11 22.490 0.517 -2.090 1.00 54.10 C
ATOM 19 O4 U B 11 22.822 1.009 -1.013 1.00 54.11 O
ATOM 20 C5 U B 11 21.190 0.589 -2.679 1.00 55.94 C
ATOM 21 C6 U B 11 20.970 0.017 -3.864 1.00 58.37 C
ATOM 22 P A B 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 23 OP1 A B 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 24 OP2 A B 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 25 O5' A B 12 20.703 -6.688 -5.574 1.00 66.40 O
TER
ATOM 2 P A A 9 23.956 0.706 -9.304 1.00 58.59 P
ATOM 3 OP1 A A 9 24.673 -0.167 -8.332 1.00 59.54 O
ATOM 4 OP2 A A 9 23.223 0.098 -10.447 1.00 59.80 O
ATOM 5 O5' A A 9 22.931 1.627 -8.500 1.00 55.99 O
ATOM 6 C5' A A 9 21.542 1.297 -8.480 1.00 56.25 C
ATOM 7 C4' A A 9 20.802 2.049 -7.389 1.00 55.45 C
ATOM 8 O4' A A 9 21.480 1.873 -6.107 1.00 54.39 O
ATOM 9 C3' A A 9 20.742 3.561 -7.603 1.00 55.36 C
ATOM 10 O3' A A 9 19.595 4.111 -6.943 1.00 59.44 O
ATOM 11 C2' A A 9 22.026 4.034 -6.925 1.00 54.51 C
ATOM 12 O2' A A 9 21.995 5.387 -6.514 1.00 55.10 O
ATOM 13 C1' A A 9 22.070 3.100 -5.715 1.00 53.23 C
ATOM 14 N9 A A 9 23.371 2.875 -5.078 1.00 49.02 N
ATOM 15 C8 A A 9 24.445 2.144 -5.519 1.00 48.43 C
ATOM 16 N7 A A 9 25.479 2.182 -4.709 1.00 44.34 N
ATOM 17 C5 A A 9 25.053 2.983 -3.662 1.00 45.69 C
ATOM 18 C6 A A 9 25.682 3.409 -2.485 1.00 45.59 C
ATOM 19 N6 A A 9 26.934 3.081 -2.153 1.00 44.83 N
ATOM 20 N1 A A 9 24.976 4.200 -1.648 1.00 44.10 N
ATOM 21 C2 A A 9 23.728 4.533 -1.983 1.00 44.12 C
ATOM 22 N3 A A 9 23.030 4.199 -3.056 1.00 45.14 N
ATOM 23 C4 A A 9 23.757 3.413 -3.870 1.00 47.35 C
ATOM 24 P G A 10 18.240 4.389 -7.772 1.00 60.80 P
ATOM 25 OP1 G A 10 18.247 3.490 -8.953 1.00 62.26 O
ATOM 26 OP2 G A 10 18.102 5.850 -7.973 1.00 59.44 O
ATOM 27 O5' G A 10 17.071 3.919 -6.794 1.00 62.63 O
TER
ATOM 1 O3' G B 10 17.636 0.528 -4.442 1.00 65.07 O
ATOM 2 P U B 11 16.939 -0.914 -4.395 1.00 65.11 P
ATOM 3 OP1 U B 11 15.789 -0.832 -5.332 1.00 65.78 O
ATOM 4 OP2 U B 11 16.705 -1.272 -2.976 1.00 64.03 O
ATOM 5 O5' U B 11 18.010 -1.928 -4.987 1.00 61.54 O
ATOM 6 C5' U B 11 18.213 -2.022 -6.383 1.00 63.71 C
ATOM 7 C4' U B 11 19.684 -2.130 -6.683 1.00 65.82 C
ATOM 8 O4' U B 11 20.369 -0.912 -6.293 1.00 65.34 O
ATOM 9 C3' U B 11 20.416 -3.219 -5.926 1.00 65.29 C
ATOM 10 O3' U B 11 20.225 -4.452 -6.597 1.00 68.38 O
ATOM 11 C2' U B 11 21.864 -2.744 -5.994 1.00 65.27 C
ATOM 12 O2' U B 11 22.526 -3.094 -7.195 1.00 66.79 O
ATOM 13 C1' U B 11 21.697 -1.224 -5.902 1.00 63.20 C
ATOM 14 N1 U B 11 21.956 -0.645 -4.571 1.00 59.16 N
ATOM 15 C2 U B 11 23.232 -0.764 -4.053 1.00 55.74 C
ATOM 16 O2 U B 11 24.133 -1.348 -4.633 1.00 53.48 O
ATOM 17 N3 U B 11 23.419 -0.169 -2.833 1.00 53.58 N
ATOM 18 C4 U B 11 22.490 0.517 -2.090 1.00 54.10 C
ATOM 19 O4 U B 11 22.822 1.009 -1.013 1.00 54.11 O
ATOM 20 C5 U B 11 21.190 0.589 -2.679 1.00 55.94 C
ATOM 21 C6 U B 11 20.970 0.017 -3.864 1.00 58.37 C
ATOM 22 P A B 12 19.507 -5.673 -5.836 1.00 70.30 P
ATOM 23 OP1 A B 12 18.558 -6.296 -6.801 1.00 71.64 O
ATOM 24 OP2 A B 12 19.004 -5.214 -4.513 1.00 71.63 O
ATOM 25 O5' A B 12 20.703 -6.688 -5.574 1.00 66.40 O
TER
Atoms:
OP1: (24.673,-0.167,-8.332)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
OP2: (23.223,0.098,-10.447)
C3': (20.742,3.561,-7.603)
C1': (22.070,3.100,-5.715)
C5': (21.542,1.297,-8.480)
O4': (21.480,1.873,-6.107)
C8: (24.445,2.144,-5.519)
O2': (21.995,5.387,-6.514)
C6: (25.682,3.409,-2.485)
C5: (25.053,2.983,-3.662)
C4: (23.757,3.413,-3.870)
P: (23.956,0.706,-9.304)
C4': (20.802,2.049,-7.389)
C2': (22.026,4.034,-6.925)
C2: (23.728,4.533,-1.983)
N1: (24.976,4.200,-1.648)
N3: (23.030,4.199,-3.056)
N6: (26.934,3.081,-2.153)
N7: (25.479,2.182,-4.709)
N9: (23.371,2.875,-5.078)
O5': (22.931,1.627,-8.500)
O3': (19.595,4.111,-6.943)
C4: (22.490,0.517,-2.090)
N3: (23.419,-0.169,-2.833)
OP1: (15.789,-0.832,-5.332)
OP2: (16.705,-1.272,-2.976)
C2: (23.232,-0.764,-4.053)
C1': (21.697,-1.224,-5.902)
C3': (20.416,-3.219,-5.926)
O5': (18.010,-1.928,-4.987)
O4': (20.369,-0.912,-6.293)
C5': (18.213,-2.022,-6.383)
P: (16.939,-0.914,-4.395)
C4': (19.684,-2.130,-6.683)
C2': (21.864,-2.744,-5.994)
O2': (22.526,-3.094,-7.195)
N1: (21.956,-0.645,-4.571)
O4: (22.822,1.009,-1.013)
O2: (24.133,-1.348,-4.633)
C6: (20.970,0.017,-3.864)
C5: (21.190,0.589,-2.679)
O3': (20.225,-4.452,-6.597)
N3: (23.419,-0.169,-2.833)
OP1: (15.789,-0.832,-5.332)
OP2: (16.705,-1.272,-2.976)
C2: (23.232,-0.764,-4.053)
C1': (21.697,-1.224,-5.902)
C3': (20.416,-3.219,-5.926)
O5': (18.010,-1.928,-4.987)
O4': (20.369,-0.912,-6.293)
C5': (18.213,-2.022,-6.383)
P: (16.939,-0.914,-4.395)
C4': (19.684,-2.130,-6.683)
C2': (21.864,-2.744,-5.994)
O2': (22.526,-3.094,-7.195)
N1: (21.956,-0.645,-4.571)
O4: (22.822,1.009,-1.013)
O2: (24.133,-1.348,-4.633)
C6: (20.970,0.017,-3.864)
C5: (21.190,0.589,-2.679)
O3': (20.225,-4.452,-6.597)
Image (generated by PyMOL):