Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0345:0347
Extra
PDB:
ATOM 1 O3' C A 344 53.363 120.649 15.324 1.00 67.84 O
ATOM 2 P A A 345 54.344 120.214 14.123 1.00 68.86 P
ATOM 3 OP1 A A 345 53.533 119.497 13.103 1.00 69.98 O
ATOM 4 OP2 A A 345 55.548 119.560 14.700 1.00 68.54 O
ATOM 5 O5' A A 345 54.807 121.587 13.479 1.00 70.00 O
ATOM 6 C5' A A 345 55.992 121.658 12.691 1.00 72.09 C
ATOM 7 C4' A A 345 56.060 122.993 12.012 1.00 74.31 C
ATOM 8 O4' A A 345 55.032 123.051 10.985 1.00 75.94 O
ATOM 9 C3' A A 345 55.813 124.179 12.935 1.00 75.28 C
ATOM 10 O3' A A 345 56.639 125.255 12.526 1.00 77.35 O
ATOM 11 C2' A A 345 54.332 124.477 12.710 1.00 75.65 C
ATOM 12 O2' A A 345 53.976 125.821 12.962 1.00 75.50 O
ATOM 13 C1' A A 345 54.179 124.149 11.227 1.00 76.32 C
ATOM 14 N9 A A 345 52.817 123.773 10.843 1.00 77.47 N
ATOM 15 C8 A A 345 52.110 122.648 11.199 1.00 77.39 C
ATOM 16 N7 A A 345 50.892 122.612 10.712 1.00 78.03 N
ATOM 17 C5 A A 345 50.786 123.789 9.982 1.00 78.46 C
ATOM 18 C6 A A 345 49.730 124.352 9.229 1.00 78.01 C
ATOM 19 N6 A A 345 48.532 123.778 9.084 1.00 77.46 N
ATOM 20 N1 A A 345 49.952 125.543 8.626 1.00 78.05 N
ATOM 21 C2 A A 345 51.153 126.123 8.771 1.00 78.89 C
ATOM 22 N3 A A 345 52.222 125.696 9.452 1.00 79.52 N
ATOM 23 C4 A A 345 51.969 124.511 10.044 1.00 79.01 C
ATOM 24 P G A 346 58.080 125.447 13.208 1.00 78.69 P
ATOM 25 OP1 G A 346 58.382 124.223 13.986 1.00 78.28 O
ATOM 26 OP2 G A 346 58.082 126.766 13.882 1.00 78.92 O
ATOM 27 O5' G A 346 59.099 125.477 11.982 1.00 79.71 O
TER
ATOM 1 O3' G B 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 2 P U B 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 3 OP1 U B 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 4 OP2 U B 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 5 O5' U B 347 59.167 120.941 7.934 1.00 82.71 O
ATOM 6 C5' U B 347 59.245 120.229 9.192 1.00 80.29 C
ATOM 7 C4' U B 347 57.896 119.641 9.548 1.00 78.96 C
ATOM 8 O4' U B 347 56.977 120.714 9.865 1.00 78.08 O
ATOM 9 C3' U B 347 57.191 118.860 8.447 1.00 79.37 C
ATOM 10 O3' U B 347 57.672 117.516 8.376 1.00 81.56 O
ATOM 11 C2' U B 347 55.724 118.944 8.864 1.00 78.12 C
ATOM 12 O2' U B 347 55.343 118.003 9.850 1.00 77.43 O
ATOM 13 C1' U B 347 55.664 120.339 9.489 1.00 76.73 C
ATOM 14 N1 U B 347 55.076 121.403 8.659 1.00 74.92 N
ATOM 15 C2 U B 347 53.713 121.355 8.438 1.00 74.72 C
ATOM 16 O2 U B 347 53.004 120.448 8.852 1.00 75.45 O
ATOM 17 N3 U B 347 53.206 122.406 7.715 1.00 73.84 N
ATOM 18 C4 U B 347 53.905 123.473 7.197 1.00 73.24 C
ATOM 19 O4 U B 347 53.292 124.376 6.628 1.00 72.66 O
ATOM 20 C5 U B 347 55.314 123.438 7.442 1.00 73.26 C
ATOM 21 C6 U B 347 55.839 122.428 8.142 1.00 73.83 C
ATOM 22 P A B 348 57.802 116.780 6.947 1.00 82.30 P
ATOM 23 OP1 A B 348 58.446 115.458 7.190 1.00 81.65 O
ATOM 24 OP2 A B 348 58.422 117.731 5.991 1.00 82.13 O
ATOM 25 O5' A B 348 56.290 116.539 6.494 1.00 82.69 O
TER
ATOM 2 P A A 345 54.344 120.214 14.123 1.00 68.86 P
ATOM 3 OP1 A A 345 53.533 119.497 13.103 1.00 69.98 O
ATOM 4 OP2 A A 345 55.548 119.560 14.700 1.00 68.54 O
ATOM 5 O5' A A 345 54.807 121.587 13.479 1.00 70.00 O
ATOM 6 C5' A A 345 55.992 121.658 12.691 1.00 72.09 C
ATOM 7 C4' A A 345 56.060 122.993 12.012 1.00 74.31 C
ATOM 8 O4' A A 345 55.032 123.051 10.985 1.00 75.94 O
ATOM 9 C3' A A 345 55.813 124.179 12.935 1.00 75.28 C
ATOM 10 O3' A A 345 56.639 125.255 12.526 1.00 77.35 O
ATOM 11 C2' A A 345 54.332 124.477 12.710 1.00 75.65 C
ATOM 12 O2' A A 345 53.976 125.821 12.962 1.00 75.50 O
ATOM 13 C1' A A 345 54.179 124.149 11.227 1.00 76.32 C
ATOM 14 N9 A A 345 52.817 123.773 10.843 1.00 77.47 N
ATOM 15 C8 A A 345 52.110 122.648 11.199 1.00 77.39 C
ATOM 16 N7 A A 345 50.892 122.612 10.712 1.00 78.03 N
ATOM 17 C5 A A 345 50.786 123.789 9.982 1.00 78.46 C
ATOM 18 C6 A A 345 49.730 124.352 9.229 1.00 78.01 C
ATOM 19 N6 A A 345 48.532 123.778 9.084 1.00 77.46 N
ATOM 20 N1 A A 345 49.952 125.543 8.626 1.00 78.05 N
ATOM 21 C2 A A 345 51.153 126.123 8.771 1.00 78.89 C
ATOM 22 N3 A A 345 52.222 125.696 9.452 1.00 79.52 N
ATOM 23 C4 A A 345 51.969 124.511 10.044 1.00 79.01 C
ATOM 24 P G A 346 58.080 125.447 13.208 1.00 78.69 P
ATOM 25 OP1 G A 346 58.382 124.223 13.986 1.00 78.28 O
ATOM 26 OP2 G A 346 58.082 126.766 13.882 1.00 78.92 O
ATOM 27 O5' G A 346 59.099 125.477 11.982 1.00 79.71 O
TER
ATOM 1 O3' G B 346 59.022 123.405 8.423 1.00 83.03 O
ATOM 2 P U B 347 59.958 122.306 7.697 1.00 83.68 P
ATOM 3 OP1 U B 347 61.284 122.216 8.372 1.00 84.06 O
ATOM 4 OP2 U B 347 59.898 122.569 6.233 1.00 83.42 O
ATOM 5 O5' U B 347 59.167 120.941 7.934 1.00 82.71 O
ATOM 6 C5' U B 347 59.245 120.229 9.192 1.00 80.29 C
ATOM 7 C4' U B 347 57.896 119.641 9.548 1.00 78.96 C
ATOM 8 O4' U B 347 56.977 120.714 9.865 1.00 78.08 O
ATOM 9 C3' U B 347 57.191 118.860 8.447 1.00 79.37 C
ATOM 10 O3' U B 347 57.672 117.516 8.376 1.00 81.56 O
ATOM 11 C2' U B 347 55.724 118.944 8.864 1.00 78.12 C
ATOM 12 O2' U B 347 55.343 118.003 9.850 1.00 77.43 O
ATOM 13 C1' U B 347 55.664 120.339 9.489 1.00 76.73 C
ATOM 14 N1 U B 347 55.076 121.403 8.659 1.00 74.92 N
ATOM 15 C2 U B 347 53.713 121.355 8.438 1.00 74.72 C
ATOM 16 O2 U B 347 53.004 120.448 8.852 1.00 75.45 O
ATOM 17 N3 U B 347 53.206 122.406 7.715 1.00 73.84 N
ATOM 18 C4 U B 347 53.905 123.473 7.197 1.00 73.24 C
ATOM 19 O4 U B 347 53.292 124.376 6.628 1.00 72.66 O
ATOM 20 C5 U B 347 55.314 123.438 7.442 1.00 73.26 C
ATOM 21 C6 U B 347 55.839 122.428 8.142 1.00 73.83 C
ATOM 22 P A B 348 57.802 116.780 6.947 1.00 82.30 P
ATOM 23 OP1 A B 348 58.446 115.458 7.190 1.00 81.65 O
ATOM 24 OP2 A B 348 58.422 117.731 5.991 1.00 82.13 O
ATOM 25 O5' A B 348 56.290 116.539 6.494 1.00 82.69 O
TER
Atoms:
OP1: (53.533,119.497,13.103)
OP2: (55.548,119.560,14.700)
C3': (55.813,124.179,12.935)
C1': (54.179,124.149,11.227)
C5': (55.992,121.658,12.691)
O4': (55.032,123.051,10.985)
C8: (52.110,122.648,11.199)
O2': (53.976,125.821,12.962)
C6: (49.730,124.352,9.229)
C5: (50.786,123.789,9.982)
C4: (51.969,124.511,10.044)
P: (54.344,120.214,14.123)
C4': (56.060,122.993,12.012)
C2': (54.332,124.477,12.710)
C2: (51.153,126.123,8.771)
N1: (49.952,125.543,8.626)
N3: (52.222,125.696,9.452)
N6: (48.532,123.778,9.084)
N7: (50.892,122.612,10.712)
N9: (52.817,123.773,10.843)
O5': (54.807,121.587,13.479)
O3': (56.639,125.255,12.526)
OP2: (55.548,119.560,14.700)
C3': (55.813,124.179,12.935)
C1': (54.179,124.149,11.227)
C5': (55.992,121.658,12.691)
O4': (55.032,123.051,10.985)
C8: (52.110,122.648,11.199)
O2': (53.976,125.821,12.962)
C6: (49.730,124.352,9.229)
C5: (50.786,123.789,9.982)
C4: (51.969,124.511,10.044)
P: (54.344,120.214,14.123)
C4': (56.060,122.993,12.012)
C2': (54.332,124.477,12.710)
C2: (51.153,126.123,8.771)
N1: (49.952,125.543,8.626)
N3: (52.222,125.696,9.452)
N6: (48.532,123.778,9.084)
N7: (50.892,122.612,10.712)
N9: (52.817,123.773,10.843)
O5': (54.807,121.587,13.479)
O3': (56.639,125.255,12.526)
C4: (53.905,123.473,7.197)
N3: (53.206,122.406,7.715)
OP1: (61.284,122.216,8.372)
OP2: (59.898,122.569,6.233)
C2: (53.713,121.355,8.438)
C1': (55.664,120.339,9.489)
C3': (57.191,118.860,8.447)
O5': (59.167,120.941,7.934)
O4': (56.977,120.714,9.865)
C5': (59.245,120.229,9.192)
P: (59.958,122.306,7.697)
C4': (57.896,119.641,9.548)
C2': (55.724,118.944,8.864)
O2': (55.343,118.003,9.850)
N1: (55.076,121.403,8.659)
O4: (53.292,124.376,6.628)
O2: (53.004,120.448,8.852)
C6: (55.839,122.428,8.142)
C5: (55.314,123.438,7.442)
O3': (57.672,117.516,8.376)
N3: (53.206,122.406,7.715)
OP1: (61.284,122.216,8.372)
OP2: (59.898,122.569,6.233)
C2: (53.713,121.355,8.438)
C1': (55.664,120.339,9.489)
C3': (57.191,118.860,8.447)
O5': (59.167,120.941,7.934)
O4': (56.977,120.714,9.865)
C5': (59.245,120.229,9.192)
P: (59.958,122.306,7.697)
C4': (57.896,119.641,9.548)
C2': (55.724,118.944,8.864)
O2': (55.343,118.003,9.850)
N1: (55.076,121.403,8.659)
O4: (53.292,124.376,6.628)
O2: (53.004,120.448,8.852)
C6: (55.839,122.428,8.142)
C5: (55.314,123.438,7.442)
O3': (57.672,117.516,8.376)
Image (generated by PyMOL):