Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQO:0560:0559
Extra
PDB:
ATOM 1 O3' C A 559 -9.312 98.254 125.653 1.00 73.99 O
ATOM 2 P G A 560 -9.154 97.238 126.889 1.00 76.05 P
ATOM 3 OP1 G A 560 -9.612 97.960 128.100 1.00 75.95 O
ATOM 4 OP2 G A 560 -7.786 96.658 126.859 1.00 76.42 O
ATOM 5 O5' G A 560 -10.199 96.080 126.558 1.00 76.56 O
ATOM 6 C5' G A 560 -11.614 96.350 126.568 1.00 77.64 C
ATOM 7 C4' G A 560 -12.388 95.152 126.076 1.00 78.08 C
ATOM 8 O4' G A 560 -12.041 94.885 124.693 1.00 77.53 O
ATOM 9 C3' G A 560 -12.117 93.834 126.784 1.00 78.78 C
ATOM 10 O3' G A 560 -12.829 93.725 128.017 1.00 80.66 O
ATOM 11 C2' G A 560 -12.579 92.820 125.745 1.00 77.74 C
ATOM 12 O2' G A 560 -13.985 92.669 125.711 1.00 77.31 O
ATOM 13 C1' G A 560 -12.111 93.488 124.448 1.00 76.82 C
ATOM 14 N9 G A 560 -10.798 93.024 124.003 1.00 75.30 N
ATOM 15 C8 G A 560 -9.585 93.654 124.169 1.00 74.19 C
ATOM 16 N7 G A 560 -8.585 92.978 123.672 1.00 73.77 N
ATOM 17 C5 G A 560 -9.171 91.834 123.144 1.00 73.34 C
ATOM 18 C6 G A 560 -8.588 90.723 122.475 1.00 73.24 C
ATOM 19 O6 G A 560 -7.396 90.516 122.214 1.00 73.09 O
ATOM 20 N1 G A 560 -9.550 89.789 122.103 1.00 72.20 N
ATOM 21 C2 G A 560 -10.893 89.901 122.348 1.00 71.50 C
ATOM 22 N2 G A 560 -11.656 88.891 121.923 1.00 70.59 N
ATOM 23 N3 G A 560 -11.448 90.926 122.968 1.00 72.58 N
ATOM 24 C4 G A 560 -10.535 91.849 123.336 1.00 73.36 C
ATOM 25 P A A 561 -12.253 92.787 129.193 1.00 82.11 P
ATOM 26 OP1 A A 561 -13.185 92.909 130.345 1.00 82.42 O
ATOM 27 OP2 A A 561 -10.807 93.087 129.388 1.00 80.81 O
ATOM 28 O5' A A 561 -12.389 91.310 128.608 1.00 79.78 O
TER
ATOM 1 O3' C B 558 -4.385 98.658 122.077 1.00 65.88 O
ATOM 2 P C B 559 -4.670 97.695 123.335 1.00 66.93 P
ATOM 3 OP1 C B 559 -4.018 98.291 124.529 1.00 66.66 O
ATOM 4 OP2 C B 559 -4.358 96.292 122.948 1.00 66.31 O
ATOM 5 O5' C B 559 -6.243 97.793 123.532 1.00 68.29 O
ATOM 6 C5' C B 559 -6.893 99.060 123.699 1.00 68.63 C
ATOM 7 C4' C B 559 -8.376 98.898 123.494 1.00 70.37 C
ATOM 8 O4' C B 559 -8.623 98.475 122.127 1.00 69.35 O
ATOM 9 C3' C B 559 -9.017 97.805 124.333 1.00 71.66 C
ATOM 10 O3' C B 559 -9.312 98.254 125.653 1.00 73.99 O
ATOM 11 C2' C B 559 -10.263 97.471 123.527 1.00 70.71 C
ATOM 12 O2' C B 559 -11.287 98.427 123.719 1.00 71.78 O
ATOM 13 C1' C B 559 -9.729 97.587 122.095 1.00 68.87 C
ATOM 14 N1 C B 559 -9.295 96.303 121.506 1.00 66.66 N
ATOM 15 C2 C B 559 -10.255 95.486 120.880 1.00 66.40 C
ATOM 16 O2 C B 559 -11.438 95.864 120.837 1.00 66.37 O
ATOM 17 N3 C B 559 -9.868 94.303 120.340 1.00 65.09 N
ATOM 18 C4 C B 559 -8.590 93.923 120.411 1.00 63.87 C
ATOM 19 N4 C B 559 -8.258 92.742 119.874 1.00 61.79 N
ATOM 20 C5 C B 559 -7.596 94.734 121.037 1.00 63.88 C
ATOM 21 C6 C B 559 -7.987 95.904 121.563 1.00 65.20 C
ATOM 22 P G B 560 -9.154 97.238 126.889 1.00 76.05 P
ATOM 23 OP1 G B 560 -9.612 97.960 128.100 1.00 75.95 O
ATOM 24 OP2 G B 560 -7.786 96.658 126.859 1.00 76.42 O
ATOM 25 O5' G B 560 -10.199 96.080 126.558 1.00 76.56 O
TER
ATOM 2 P G A 560 -9.154 97.238 126.889 1.00 76.05 P
ATOM 3 OP1 G A 560 -9.612 97.960 128.100 1.00 75.95 O
ATOM 4 OP2 G A 560 -7.786 96.658 126.859 1.00 76.42 O
ATOM 5 O5' G A 560 -10.199 96.080 126.558 1.00 76.56 O
ATOM 6 C5' G A 560 -11.614 96.350 126.568 1.00 77.64 C
ATOM 7 C4' G A 560 -12.388 95.152 126.076 1.00 78.08 C
ATOM 8 O4' G A 560 -12.041 94.885 124.693 1.00 77.53 O
ATOM 9 C3' G A 560 -12.117 93.834 126.784 1.00 78.78 C
ATOM 10 O3' G A 560 -12.829 93.725 128.017 1.00 80.66 O
ATOM 11 C2' G A 560 -12.579 92.820 125.745 1.00 77.74 C
ATOM 12 O2' G A 560 -13.985 92.669 125.711 1.00 77.31 O
ATOM 13 C1' G A 560 -12.111 93.488 124.448 1.00 76.82 C
ATOM 14 N9 G A 560 -10.798 93.024 124.003 1.00 75.30 N
ATOM 15 C8 G A 560 -9.585 93.654 124.169 1.00 74.19 C
ATOM 16 N7 G A 560 -8.585 92.978 123.672 1.00 73.77 N
ATOM 17 C5 G A 560 -9.171 91.834 123.144 1.00 73.34 C
ATOM 18 C6 G A 560 -8.588 90.723 122.475 1.00 73.24 C
ATOM 19 O6 G A 560 -7.396 90.516 122.214 1.00 73.09 O
ATOM 20 N1 G A 560 -9.550 89.789 122.103 1.00 72.20 N
ATOM 21 C2 G A 560 -10.893 89.901 122.348 1.00 71.50 C
ATOM 22 N2 G A 560 -11.656 88.891 121.923 1.00 70.59 N
ATOM 23 N3 G A 560 -11.448 90.926 122.968 1.00 72.58 N
ATOM 24 C4 G A 560 -10.535 91.849 123.336 1.00 73.36 C
ATOM 25 P A A 561 -12.253 92.787 129.193 1.00 82.11 P
ATOM 26 OP1 A A 561 -13.185 92.909 130.345 1.00 82.42 O
ATOM 27 OP2 A A 561 -10.807 93.087 129.388 1.00 80.81 O
ATOM 28 O5' A A 561 -12.389 91.310 128.608 1.00 79.78 O
TER
ATOM 1 O3' C B 558 -4.385 98.658 122.077 1.00 65.88 O
ATOM 2 P C B 559 -4.670 97.695 123.335 1.00 66.93 P
ATOM 3 OP1 C B 559 -4.018 98.291 124.529 1.00 66.66 O
ATOM 4 OP2 C B 559 -4.358 96.292 122.948 1.00 66.31 O
ATOM 5 O5' C B 559 -6.243 97.793 123.532 1.00 68.29 O
ATOM 6 C5' C B 559 -6.893 99.060 123.699 1.00 68.63 C
ATOM 7 C4' C B 559 -8.376 98.898 123.494 1.00 70.37 C
ATOM 8 O4' C B 559 -8.623 98.475 122.127 1.00 69.35 O
ATOM 9 C3' C B 559 -9.017 97.805 124.333 1.00 71.66 C
ATOM 10 O3' C B 559 -9.312 98.254 125.653 1.00 73.99 O
ATOM 11 C2' C B 559 -10.263 97.471 123.527 1.00 70.71 C
ATOM 12 O2' C B 559 -11.287 98.427 123.719 1.00 71.78 O
ATOM 13 C1' C B 559 -9.729 97.587 122.095 1.00 68.87 C
ATOM 14 N1 C B 559 -9.295 96.303 121.506 1.00 66.66 N
ATOM 15 C2 C B 559 -10.255 95.486 120.880 1.00 66.40 C
ATOM 16 O2 C B 559 -11.438 95.864 120.837 1.00 66.37 O
ATOM 17 N3 C B 559 -9.868 94.303 120.340 1.00 65.09 N
ATOM 18 C4 C B 559 -8.590 93.923 120.411 1.00 63.87 C
ATOM 19 N4 C B 559 -8.258 92.742 119.874 1.00 61.79 N
ATOM 20 C5 C B 559 -7.596 94.734 121.037 1.00 63.88 C
ATOM 21 C6 C B 559 -7.987 95.904 121.563 1.00 65.20 C
ATOM 22 P G B 560 -9.154 97.238 126.889 1.00 76.05 P
ATOM 23 OP1 G B 560 -9.612 97.960 128.100 1.00 75.95 O
ATOM 24 OP2 G B 560 -7.786 96.658 126.859 1.00 76.42 O
ATOM 25 O5' G B 560 -10.199 96.080 126.558 1.00 76.56 O
TER
Atoms:
OP1: (-9.612,97.960,128.100)
OP2: (-7.786,96.658,126.859)
C3': (-12.117,93.834,126.784)
C1': (-12.111,93.488,124.448)
C5': (-11.614,96.350,126.568)
O6: (-7.396,90.516,122.214)
O4': (-12.041,94.885,124.693)
C8: (-9.585,93.654,124.169)
C2: (-10.893,89.901,122.348)
C6: (-8.588,90.723,122.475)
C5: (-9.171,91.834,123.144)
C4: (-10.535,91.849,123.336)
P: (-9.154,97.238,126.889)
C4': (-12.388,95.152,126.076)
C2': (-12.579,92.820,125.745)
O2': (-13.985,92.669,125.711)
N1: (-9.550,89.789,122.103)
N2: (-11.656,88.891,121.923)
N3: (-11.448,90.926,122.968)
N7: (-8.585,92.978,123.672)
N9: (-10.798,93.024,124.003)
O5': (-10.199,96.080,126.558)
O3': (-12.829,93.725,128.017)
OP2: (-7.786,96.658,126.859)
C3': (-12.117,93.834,126.784)
C1': (-12.111,93.488,124.448)
C5': (-11.614,96.350,126.568)
O6: (-7.396,90.516,122.214)
O4': (-12.041,94.885,124.693)
C8: (-9.585,93.654,124.169)
C2: (-10.893,89.901,122.348)
C6: (-8.588,90.723,122.475)
C5: (-9.171,91.834,123.144)
C4: (-10.535,91.849,123.336)
P: (-9.154,97.238,126.889)
C4': (-12.388,95.152,126.076)
C2': (-12.579,92.820,125.745)
O2': (-13.985,92.669,125.711)
N1: (-9.550,89.789,122.103)
N2: (-11.656,88.891,121.923)
N3: (-11.448,90.926,122.968)
N7: (-8.585,92.978,123.672)
N9: (-10.798,93.024,124.003)
O5': (-10.199,96.080,126.558)
O3': (-12.829,93.725,128.017)
C2: (-10.255,95.486,120.880)
OP1: (-4.018,98.291,124.529)
OP2: (-4.358,96.292,122.948)
C4: (-8.590,93.923,120.411)
O5': (-6.243,97.793,123.532)
C3': (-9.017,97.805,124.333)
C1': (-9.729,97.587,122.095)
O4': (-8.623,98.475,122.127)
C5': (-6.893,99.060,123.699)
P: (-4.670,97.695,123.335)
O2: (-11.438,95.864,120.837)
C4': (-8.376,98.898,123.494)
C2': (-10.263,97.471,123.527)
O2': (-11.287,98.427,123.719)
N1: (-9.295,96.303,121.506)
N3: (-9.868,94.303,120.340)
N4: (-8.258,92.742,119.874)
C6: (-7.987,95.904,121.563)
C5: (-7.596,94.734,121.037)
O3': (-9.312,98.254,125.653)
OP1: (-4.018,98.291,124.529)
OP2: (-4.358,96.292,122.948)
C4: (-8.590,93.923,120.411)
O5': (-6.243,97.793,123.532)
C3': (-9.017,97.805,124.333)
C1': (-9.729,97.587,122.095)
O4': (-8.623,98.475,122.127)
C5': (-6.893,99.060,123.699)
P: (-4.670,97.695,123.335)
O2: (-11.438,95.864,120.837)
C4': (-8.376,98.898,123.494)
C2': (-10.263,97.471,123.527)
O2': (-11.287,98.427,123.719)
N1: (-9.295,96.303,121.506)
N3: (-9.868,94.303,120.340)
N4: (-8.258,92.742,119.874)
C6: (-7.987,95.904,121.563)
C5: (-7.596,94.734,121.037)
O3': (-9.312,98.254,125.653)
Image (generated by PyMOL):