Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A1177:A1116
Extra
PDB:
ATOM 1 O3' G A1176 -137.318 74.661 13.247 1.00 58.48 O
ATOM 2 P A A1177 -138.351 73.907 14.208 1.00 41.82 P
ATOM 3 OP1 A A1177 -139.719 74.187 13.698 1.00 41.82 O
ATOM 4 OP2 A A1177 -138.004 74.303 15.600 1.00 41.82 O
ATOM 5 O5' A A1177 -137.993 72.363 13.977 1.00 41.82 O
ATOM 6 C5' A A1177 -138.796 71.324 14.545 1.00 41.82 C
ATOM 7 C4' A A1177 -138.737 70.056 13.722 1.00 41.82 C
ATOM 8 O4' A A1177 -139.481 70.229 12.486 1.00 41.82 O
ATOM 9 C3' A A1177 -137.358 69.632 13.258 1.00 41.82 C
ATOM 10 O3' A A1177 -136.626 68.953 14.259 1.00 41.82 O
ATOM 11 C2' A A1177 -137.661 68.776 12.034 1.00 41.82 C
ATOM 12 O2' A A1177 -138.048 67.464 12.411 1.00 41.82 O
ATOM 13 C1' A A1177 -138.874 69.488 11.448 1.00 41.82 C
ATOM 14 N9 A A1177 -138.505 70.406 10.356 1.00 41.22 N
ATOM 15 C8 A A1177 -138.454 71.778 10.350 1.00 41.22 C
ATOM 16 N7 A A1177 -138.090 72.300 9.201 1.00 41.22 N
ATOM 17 C5 A A1177 -137.893 71.200 8.389 1.00 41.22 C
ATOM 18 C6 A A1177 -137.505 71.083 7.046 1.00 41.22 C
ATOM 19 N6 A A1177 -137.231 72.097 6.220 1.00 41.22 N
ATOM 20 N1 A A1177 -137.410 69.832 6.569 1.00 41.22 N
ATOM 21 C2 A A1177 -137.687 68.788 7.373 1.00 41.22 C
ATOM 22 N3 A A1177 -138.066 68.769 8.648 1.00 41.22 N
ATOM 23 C4 A A1177 -138.148 70.029 9.093 1.00 41.22 C
ATOM 24 P A A1178 -135.054 69.221 14.418 1.00 54.77 P
ATOM 25 OP1 A A1178 -134.626 68.563 15.675 1.00 54.77 O
ATOM 26 OP2 A A1178 -134.844 70.679 14.272 1.00 54.77 O
ATOM 27 O5' A A1178 -134.433 68.466 13.159 1.00 54.77 O
TER
ATOM 1 O3' A B1115 -142.388 65.275 9.364 1.00 35.88 O
ATOM 2 P U B1116 -143.903 65.704 9.057 1.00 43.03 P
ATOM 3 OP1 U B1116 -144.778 64.742 9.783 1.00 43.03 O
ATOM 4 OP2 U B1116 -144.035 65.824 7.583 1.00 43.03 O
ATOM 5 O5' U B1116 -144.000 67.152 9.718 1.00 43.03 O
ATOM 6 C5' U B1116 -143.106 67.534 10.756 1.00 43.03 C
ATOM 7 C4' U B1116 -142.648 68.969 10.615 1.00 43.03 C
ATOM 8 O4' U B1116 -141.387 69.026 9.893 1.00 43.03 O
ATOM 9 C3' U B1116 -143.548 69.898 9.817 1.00 43.03 C
ATOM 10 O3' U B1116 -144.679 70.337 10.527 1.00 43.03 O
ATOM 11 C2' U B1116 -142.590 71.006 9.444 1.00 43.03 C
ATOM 12 O2' U B1116 -142.269 71.805 10.579 1.00 43.03 O
ATOM 13 C1' U B1116 -141.374 70.177 9.071 1.00 43.03 C
ATOM 14 N1 U B1116 -141.441 69.733 7.682 1.00 42.85 N
ATOM 15 C2 U B1116 -140.918 70.563 6.724 1.00 42.85 C
ATOM 16 O2 U B1116 -140.419 71.641 6.999 1.00 42.85 O
ATOM 17 N3 U B1116 -140.996 70.084 5.442 1.00 42.85 N
ATOM 18 C4 U B1116 -141.532 68.887 5.038 1.00 42.85 C
ATOM 19 O4 U B1116 -141.526 68.611 3.841 1.00 42.85 O
ATOM 20 C5 U B1116 -142.061 68.086 6.104 1.00 42.85 C
ATOM 21 C6 U B1116 -142.004 68.530 7.364 1.00 42.85 C
ATOM 22 P C B1117 -146.061 70.492 9.750 1.00 47.95 P
ATOM 23 OP1 C B1117 -147.122 70.590 10.772 1.00 47.95 O
ATOM 24 OP2 C B1117 -146.128 69.389 8.759 1.00 47.95 O
ATOM 25 O5' C B1117 -145.880 71.891 8.989 1.00 47.95 O
TER
ATOM 2 P A A1177 -138.351 73.907 14.208 1.00 41.82 P
ATOM 3 OP1 A A1177 -139.719 74.187 13.698 1.00 41.82 O
ATOM 4 OP2 A A1177 -138.004 74.303 15.600 1.00 41.82 O
ATOM 5 O5' A A1177 -137.993 72.363 13.977 1.00 41.82 O
ATOM 6 C5' A A1177 -138.796 71.324 14.545 1.00 41.82 C
ATOM 7 C4' A A1177 -138.737 70.056 13.722 1.00 41.82 C
ATOM 8 O4' A A1177 -139.481 70.229 12.486 1.00 41.82 O
ATOM 9 C3' A A1177 -137.358 69.632 13.258 1.00 41.82 C
ATOM 10 O3' A A1177 -136.626 68.953 14.259 1.00 41.82 O
ATOM 11 C2' A A1177 -137.661 68.776 12.034 1.00 41.82 C
ATOM 12 O2' A A1177 -138.048 67.464 12.411 1.00 41.82 O
ATOM 13 C1' A A1177 -138.874 69.488 11.448 1.00 41.82 C
ATOM 14 N9 A A1177 -138.505 70.406 10.356 1.00 41.22 N
ATOM 15 C8 A A1177 -138.454 71.778 10.350 1.00 41.22 C
ATOM 16 N7 A A1177 -138.090 72.300 9.201 1.00 41.22 N
ATOM 17 C5 A A1177 -137.893 71.200 8.389 1.00 41.22 C
ATOM 18 C6 A A1177 -137.505 71.083 7.046 1.00 41.22 C
ATOM 19 N6 A A1177 -137.231 72.097 6.220 1.00 41.22 N
ATOM 20 N1 A A1177 -137.410 69.832 6.569 1.00 41.22 N
ATOM 21 C2 A A1177 -137.687 68.788 7.373 1.00 41.22 C
ATOM 22 N3 A A1177 -138.066 68.769 8.648 1.00 41.22 N
ATOM 23 C4 A A1177 -138.148 70.029 9.093 1.00 41.22 C
ATOM 24 P A A1178 -135.054 69.221 14.418 1.00 54.77 P
ATOM 25 OP1 A A1178 -134.626 68.563 15.675 1.00 54.77 O
ATOM 26 OP2 A A1178 -134.844 70.679 14.272 1.00 54.77 O
ATOM 27 O5' A A1178 -134.433 68.466 13.159 1.00 54.77 O
TER
ATOM 1 O3' A B1115 -142.388 65.275 9.364 1.00 35.88 O
ATOM 2 P U B1116 -143.903 65.704 9.057 1.00 43.03 P
ATOM 3 OP1 U B1116 -144.778 64.742 9.783 1.00 43.03 O
ATOM 4 OP2 U B1116 -144.035 65.824 7.583 1.00 43.03 O
ATOM 5 O5' U B1116 -144.000 67.152 9.718 1.00 43.03 O
ATOM 6 C5' U B1116 -143.106 67.534 10.756 1.00 43.03 C
ATOM 7 C4' U B1116 -142.648 68.969 10.615 1.00 43.03 C
ATOM 8 O4' U B1116 -141.387 69.026 9.893 1.00 43.03 O
ATOM 9 C3' U B1116 -143.548 69.898 9.817 1.00 43.03 C
ATOM 10 O3' U B1116 -144.679 70.337 10.527 1.00 43.03 O
ATOM 11 C2' U B1116 -142.590 71.006 9.444 1.00 43.03 C
ATOM 12 O2' U B1116 -142.269 71.805 10.579 1.00 43.03 O
ATOM 13 C1' U B1116 -141.374 70.177 9.071 1.00 43.03 C
ATOM 14 N1 U B1116 -141.441 69.733 7.682 1.00 42.85 N
ATOM 15 C2 U B1116 -140.918 70.563 6.724 1.00 42.85 C
ATOM 16 O2 U B1116 -140.419 71.641 6.999 1.00 42.85 O
ATOM 17 N3 U B1116 -140.996 70.084 5.442 1.00 42.85 N
ATOM 18 C4 U B1116 -141.532 68.887 5.038 1.00 42.85 C
ATOM 19 O4 U B1116 -141.526 68.611 3.841 1.00 42.85 O
ATOM 20 C5 U B1116 -142.061 68.086 6.104 1.00 42.85 C
ATOM 21 C6 U B1116 -142.004 68.530 7.364 1.00 42.85 C
ATOM 22 P C B1117 -146.061 70.492 9.750 1.00 47.95 P
ATOM 23 OP1 C B1117 -147.122 70.590 10.772 1.00 47.95 O
ATOM 24 OP2 C B1117 -146.128 69.389 8.759 1.00 47.95 O
ATOM 25 O5' C B1117 -145.880 71.891 8.989 1.00 47.95 O
TER
Atoms:
OP1: (-139.719,74.187,13.698)
OP2: (-138.004,74.303,15.600)
C3': (-137.358,69.632,13.258)
C1': (-138.874,69.488,11.448)
C5': (-138.796,71.324,14.545)
O4': (-139.481,70.229,12.486)
C8: (-138.454,71.778,10.350)
O2': (-138.048,67.464,12.411)
C6: (-137.505,71.083,7.046)
C5: (-137.893,71.200,8.389)
C4: (-138.148,70.029,9.093)
P: (-138.351,73.907,14.208)
C4': (-138.737,70.056,13.722)
C2': (-137.661,68.776,12.034)
C2: (-137.687,68.788,7.373)
N1: (-137.410,69.832,6.569)
N3: (-138.066,68.769,8.648)
N6: (-137.231,72.097,6.220)
N7: (-138.090,72.300,9.201)
N9: (-138.505,70.406,10.356)
O5': (-137.993,72.363,13.977)
O3': (-136.626,68.953,14.259)
OP2: (-138.004,74.303,15.600)
C3': (-137.358,69.632,13.258)
C1': (-138.874,69.488,11.448)
C5': (-138.796,71.324,14.545)
O4': (-139.481,70.229,12.486)
C8: (-138.454,71.778,10.350)
O2': (-138.048,67.464,12.411)
C6: (-137.505,71.083,7.046)
C5: (-137.893,71.200,8.389)
C4: (-138.148,70.029,9.093)
P: (-138.351,73.907,14.208)
C4': (-138.737,70.056,13.722)
C2': (-137.661,68.776,12.034)
C2: (-137.687,68.788,7.373)
N1: (-137.410,69.832,6.569)
N3: (-138.066,68.769,8.648)
N6: (-137.231,72.097,6.220)
N7: (-138.090,72.300,9.201)
N9: (-138.505,70.406,10.356)
O5': (-137.993,72.363,13.977)
O3': (-136.626,68.953,14.259)
C4: (-141.532,68.887,5.038)
N3: (-140.996,70.084,5.442)
OP1: (-144.778,64.742,9.783)
OP2: (-144.035,65.824,7.583)
C2: (-140.918,70.563,6.724)
C1': (-141.374,70.177,9.071)
C3': (-143.548,69.898,9.817)
O5': (-144.000,67.152,9.718)
O4': (-141.387,69.026,9.893)
C5': (-143.106,67.534,10.756)
P: (-143.903,65.704,9.057)
C4': (-142.648,68.969,10.615)
C2': (-142.590,71.006,9.444)
O2': (-142.269,71.805,10.579)
N1: (-141.441,69.733,7.682)
O4: (-141.526,68.611,3.841)
O2: (-140.419,71.641,6.999)
C6: (-142.004,68.530,7.364)
C5: (-142.061,68.086,6.104)
O3': (-144.679,70.337,10.527)
N3: (-140.996,70.084,5.442)
OP1: (-144.778,64.742,9.783)
OP2: (-144.035,65.824,7.583)
C2: (-140.918,70.563,6.724)
C1': (-141.374,70.177,9.071)
C3': (-143.548,69.898,9.817)
O5': (-144.000,67.152,9.718)
O4': (-141.387,69.026,9.893)
C5': (-143.106,67.534,10.756)
P: (-143.903,65.704,9.057)
C4': (-142.648,68.969,10.615)
C2': (-142.590,71.006,9.444)
O2': (-142.269,71.805,10.579)
N1: (-141.441,69.733,7.682)
O4: (-141.526,68.611,3.841)
O2: (-140.419,71.641,6.999)
C6: (-142.004,68.530,7.364)
C5: (-142.061,68.086,6.104)
O3': (-144.679,70.337,10.527)
Image (generated by PyMOL):