Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A345:A347
Extra
PDB:
ATOM 1 O3' C A 344 53.371 120.572 15.624 1.00 69.55 O
ATOM 2 P A A 345 54.407 120.230 14.447 1.00 70.19 P
ATOM 3 OP1 A A 345 53.647 119.932 13.204 1.00 70.23 O
ATOM 4 OP2 A A 345 55.412 119.259 14.946 1.00 69.91 O
ATOM 5 O5' A A 345 55.181 121.591 14.198 1.00 71.37 O
ATOM 6 C5' A A 345 56.370 121.593 13.412 1.00 72.51 C
ATOM 7 C4' A A 345 56.431 122.836 12.585 1.00 73.89 C
ATOM 8 O4' A A 345 55.413 122.808 11.546 1.00 74.89 O
ATOM 9 C3' A A 345 56.202 124.116 13.364 1.00 75.21 C
ATOM 10 O3' A A 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 11 C2' A A 345 54.749 124.457 13.065 1.00 75.63 C
ATOM 12 O2' A A 345 54.498 125.850 13.148 1.00 75.65 O
ATOM 13 C1' A A 345 54.626 123.978 11.623 1.00 75.75 C
ATOM 14 N9 A A 345 53.253 123.650 11.239 1.00 76.35 N
ATOM 15 C8 A A 345 52.497 122.549 11.576 1.00 76.24 C
ATOM 16 N7 A A 345 51.285 122.569 11.080 1.00 76.49 N
ATOM 17 C5 A A 345 51.239 123.758 10.359 1.00 77.30 C
ATOM 18 C6 A A 345 50.220 124.373 9.588 1.00 77.58 C
ATOM 19 N6 A A 345 49.003 123.850 9.406 1.00 77.91 N
ATOM 20 N1 A A 345 50.502 125.562 9.007 1.00 76.64 N
ATOM 21 C2 A A 345 51.719 126.091 9.186 1.00 76.78 C
ATOM 22 N3 A A 345 52.756 125.612 9.880 1.00 77.10 N
ATOM 23 C4 A A 345 52.446 124.431 10.448 1.00 76.90 C
ATOM 24 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 25 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 26 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 27 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
ATOM 2 P A A 345 54.407 120.230 14.447 1.00 70.19 P
ATOM 3 OP1 A A 345 53.647 119.932 13.204 1.00 70.23 O
ATOM 4 OP2 A A 345 55.412 119.259 14.946 1.00 69.91 O
ATOM 5 O5' A A 345 55.181 121.591 14.198 1.00 71.37 O
ATOM 6 C5' A A 345 56.370 121.593 13.412 1.00 72.51 C
ATOM 7 C4' A A 345 56.431 122.836 12.585 1.00 73.89 C
ATOM 8 O4' A A 345 55.413 122.808 11.546 1.00 74.89 O
ATOM 9 C3' A A 345 56.202 124.116 13.364 1.00 75.21 C
ATOM 10 O3' A A 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 11 C2' A A 345 54.749 124.457 13.065 1.00 75.63 C
ATOM 12 O2' A A 345 54.498 125.850 13.148 1.00 75.65 O
ATOM 13 C1' A A 345 54.626 123.978 11.623 1.00 75.75 C
ATOM 14 N9 A A 345 53.253 123.650 11.239 1.00 76.35 N
ATOM 15 C8 A A 345 52.497 122.549 11.576 1.00 76.24 C
ATOM 16 N7 A A 345 51.285 122.569 11.080 1.00 76.49 N
ATOM 17 C5 A A 345 51.239 123.758 10.359 1.00 77.30 C
ATOM 18 C6 A A 345 50.220 124.373 9.588 1.00 77.58 C
ATOM 19 N6 A A 345 49.003 123.850 9.406 1.00 77.91 N
ATOM 20 N1 A A 345 50.502 125.562 9.007 1.00 76.64 N
ATOM 21 C2 A A 345 51.719 126.091 9.186 1.00 76.78 C
ATOM 22 N3 A A 345 52.756 125.612 9.880 1.00 77.10 N
ATOM 23 C4 A A 345 52.446 124.431 10.448 1.00 76.90 C
ATOM 24 P G A 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 25 OP1 G A 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 26 OP2 G A 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 27 O5' G A 346 59.488 125.552 12.502 1.00 80.63 O
TER
ATOM 1 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 2 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 3 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 4 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 5 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
ATOM 6 C5' U B 347 59.364 120.236 9.512 1.00 83.79 C
ATOM 7 C4' U B 347 58.026 119.594 9.854 1.00 82.39 C
ATOM 8 O4' U B 347 57.073 120.613 10.239 1.00 81.57 O
ATOM 9 C3' U B 347 57.320 118.801 8.762 1.00 81.78 C
ATOM 10 O3' U B 347 57.858 117.479 8.680 1.00 82.83 O
ATOM 11 C2' U B 347 55.855 118.838 9.213 1.00 80.67 C
ATOM 12 O2' U B 347 55.481 117.919 10.222 1.00 80.58 O
ATOM 13 C1' U B 347 55.768 120.215 9.867 1.00 80.17 C
ATOM 14 N1 U B 347 55.171 121.270 9.039 1.00 79.46 N
ATOM 15 C2 U B 347 53.839 121.135 8.677 1.00 79.08 C
ATOM 16 O2 U B 347 53.159 120.175 8.993 1.00 79.45 O
ATOM 17 N3 U B 347 53.338 122.175 7.932 1.00 78.36 N
ATOM 18 C4 U B 347 54.019 123.307 7.522 1.00 77.73 C
ATOM 19 O4 U B 347 53.426 124.163 6.872 1.00 76.83 O
ATOM 20 C5 U B 347 55.391 123.364 7.924 1.00 77.97 C
ATOM 21 C6 U B 347 55.908 122.370 8.644 1.00 79.16 C
ATOM 22 P A B 348 57.879 116.697 7.270 1.00 83.63 P
ATOM 23 OP1 A B 348 58.447 115.351 7.571 1.00 83.22 O
ATOM 24 OP2 A B 348 58.495 117.527 6.200 1.00 82.86 O
ATOM 25 O5' A B 348 56.335 116.506 6.923 1.00 84.41 O
TER
Atoms:
OP1: (53.647,119.932,13.204)
OP2: (55.412,119.259,14.946)
C3': (56.202,124.116,13.364)
C1': (54.626,123.978,11.623)
C5': (56.370,121.593,13.412)
O4': (55.413,122.808,11.546)
C8: (52.497,122.549,11.576)
O2': (54.498,125.850,13.148)
C6: (50.220,124.373,9.588)
C5: (51.239,123.758,10.359)
C4: (52.446,124.431,10.448)
P: (54.407,120.230,14.447)
C4': (56.431,122.836,12.585)
C2': (54.749,124.457,13.065)
C2: (51.719,126.091,9.186)
N1: (50.502,125.562,9.007)
N3: (52.756,125.612,9.880)
N6: (49.003,123.850,9.406)
N7: (51.285,122.569,11.080)
N9: (53.253,123.650,11.239)
O5': (55.181,121.591,14.198)
O3': (57.049,125.089,12.813)
OP2: (55.412,119.259,14.946)
C3': (56.202,124.116,13.364)
C1': (54.626,123.978,11.623)
C5': (56.370,121.593,13.412)
O4': (55.413,122.808,11.546)
C8: (52.497,122.549,11.576)
O2': (54.498,125.850,13.148)
C6: (50.220,124.373,9.588)
C5: (51.239,123.758,10.359)
C4: (52.446,124.431,10.448)
P: (54.407,120.230,14.447)
C4': (56.431,122.836,12.585)
C2': (54.749,124.457,13.065)
C2: (51.719,126.091,9.186)
N1: (50.502,125.562,9.007)
N3: (52.756,125.612,9.880)
N6: (49.003,123.850,9.406)
N7: (51.285,122.569,11.080)
N9: (53.253,123.650,11.239)
O5': (55.181,121.591,14.198)
O3': (57.049,125.089,12.813)
C4: (54.019,123.307,7.522)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
N3: (53.338,122.175,7.932)
OP1: (61.488,122.116,8.607)
OP2: (59.929,122.693,6.635)
C2: (53.839,121.135,8.677)
C1': (55.768,120.215,9.867)
C3': (57.320,118.801,8.762)
O5': (59.269,120.996,8.287)
O4': (57.073,120.613,10.239)
C5': (59.364,120.236,9.512)
P: (60.110,122.335,8.069)
C4': (58.026,119.594,9.854)
C2': (55.855,118.838,9.213)
O2': (55.481,117.919,10.222)
N1: (55.171,121.270,9.039)
O4: (53.426,124.163,6.872)
O2: (53.159,120.175,8.993)
C6: (55.908,122.370,8.644)
C5: (55.391,123.364,7.924)
O3': (57.858,117.479,8.680)
Image (generated by PyMOL):