Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0280:0279
Extra
PDB:
ATOM 1 O3' C A 279 55.400 129.077 -1.902 1.00 75.04 O
ATOM 2 P G A 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 3 OP1 G A 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 4 OP2 G A 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 5 O5' G A 280 54.028 128.814 0.187 1.00 75.09 O
ATOM 6 C5' G A 280 52.842 128.173 -0.326 1.00 74.08 C
ATOM 7 C4' G A 280 52.469 126.990 0.538 1.00 73.50 C
ATOM 8 O4' G A 280 53.527 125.994 0.474 1.00 73.31 O
ATOM 9 C3' G A 280 52.328 127.280 2.023 1.00 72.97 C
ATOM 10 O3' G A 280 51.061 127.844 2.346 1.00 74.18 O
ATOM 11 C2' G A 280 52.561 125.906 2.634 1.00 71.79 C
ATOM 12 O2' G A 280 51.447 125.046 2.511 1.00 71.40 O
ATOM 13 C1' G A 280 53.688 125.381 1.744 1.00 70.98 C
ATOM 14 N9 G A 280 55.007 125.740 2.258 1.00 69.41 N
ATOM 15 C8 G A 280 55.701 126.906 2.026 1.00 68.48 C
ATOM 16 N7 G A 280 56.848 126.952 2.646 1.00 68.31 N
ATOM 17 C5 G A 280 56.923 125.742 3.323 1.00 68.22 C
ATOM 18 C6 G A 280 57.940 125.221 4.170 1.00 67.98 C
ATOM 19 O6 G A 280 59.012 125.744 4.499 1.00 68.38 O
ATOM 20 N1 G A 280 57.608 123.958 4.650 1.00 66.57 N
ATOM 21 C2 G A 280 56.450 123.281 4.352 1.00 66.74 C
ATOM 22 N2 G A 280 56.310 122.075 4.910 1.00 66.66 N
ATOM 23 N3 G A 280 55.497 123.753 3.564 1.00 66.65 N
ATOM 24 C4 G A 280 55.797 124.979 3.089 1.00 68.26 C
ATOM 25 P A A 281 50.873 128.638 3.733 1.00 76.61 P
ATOM 26 OP1 A A 281 49.577 129.370 3.667 1.00 75.54 O
ATOM 27 OP2 A A 281 52.126 129.390 4.020 1.00 75.26 O
ATOM 28 O5' A A 281 50.743 127.470 4.811 1.00 75.35 O
TER
ATOM 1 O3' C B 278 61.607 128.800 -1.833 1.00 79.59 O
ATOM 2 P C B 279 60.529 129.286 -0.746 1.00 78.93 P
ATOM 3 OP1 C B 279 60.337 130.746 -0.927 1.00 78.72 O
ATOM 4 OP2 C B 279 60.961 128.762 0.575 1.00 79.46 O
ATOM 5 O5' C B 279 59.176 128.561 -1.183 1.00 77.64 O
ATOM 6 C5' C B 279 58.566 128.849 -2.458 1.00 76.78 C
ATOM 7 C4' C B 279 57.379 127.942 -2.699 1.00 76.78 C
ATOM 8 O4' C B 279 57.804 126.553 -2.708 1.00 77.84 O
ATOM 9 C3' C B 279 56.277 127.988 -1.656 1.00 75.86 C
ATOM 10 O3' C B 279 55.400 129.077 -1.902 1.00 75.04 O
ATOM 11 C2' C B 279 55.579 126.649 -1.863 1.00 76.67 C
ATOM 12 O2' C B 279 54.693 126.653 -2.966 1.00 76.15 O
ATOM 13 C1' C B 279 56.768 125.734 -2.179 1.00 76.89 C
ATOM 14 N1 C B 279 57.291 124.993 -1.009 1.00 75.92 N
ATOM 15 C2 C B 279 56.525 123.941 -0.466 1.00 74.98 C
ATOM 16 O2 C B 279 55.419 123.673 -0.967 1.00 74.17 O
ATOM 17 N3 C B 279 57.012 123.251 0.590 1.00 74.76 N
ATOM 18 C4 C B 279 58.200 123.573 1.111 1.00 75.59 C
ATOM 19 N4 C B 279 58.646 122.859 2.150 1.00 76.23 N
ATOM 20 C5 C B 279 58.989 124.641 0.589 1.00 74.88 C
ATOM 21 C6 C B 279 58.503 125.315 -0.459 1.00 75.08 C
ATOM 22 P G B 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 23 OP1 G B 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 24 OP2 G B 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 25 O5' G B 280 54.028 128.814 0.187 1.00 75.09 O
TER
ATOM 2 P G A 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 3 OP1 G A 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 4 OP2 G A 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 5 O5' G A 280 54.028 128.814 0.187 1.00 75.09 O
ATOM 6 C5' G A 280 52.842 128.173 -0.326 1.00 74.08 C
ATOM 7 C4' G A 280 52.469 126.990 0.538 1.00 73.50 C
ATOM 8 O4' G A 280 53.527 125.994 0.474 1.00 73.31 O
ATOM 9 C3' G A 280 52.328 127.280 2.023 1.00 72.97 C
ATOM 10 O3' G A 280 51.061 127.844 2.346 1.00 74.18 O
ATOM 11 C2' G A 280 52.561 125.906 2.634 1.00 71.79 C
ATOM 12 O2' G A 280 51.447 125.046 2.511 1.00 71.40 O
ATOM 13 C1' G A 280 53.688 125.381 1.744 1.00 70.98 C
ATOM 14 N9 G A 280 55.007 125.740 2.258 1.00 69.41 N
ATOM 15 C8 G A 280 55.701 126.906 2.026 1.00 68.48 C
ATOM 16 N7 G A 280 56.848 126.952 2.646 1.00 68.31 N
ATOM 17 C5 G A 280 56.923 125.742 3.323 1.00 68.22 C
ATOM 18 C6 G A 280 57.940 125.221 4.170 1.00 67.98 C
ATOM 19 O6 G A 280 59.012 125.744 4.499 1.00 68.38 O
ATOM 20 N1 G A 280 57.608 123.958 4.650 1.00 66.57 N
ATOM 21 C2 G A 280 56.450 123.281 4.352 1.00 66.74 C
ATOM 22 N2 G A 280 56.310 122.075 4.910 1.00 66.66 N
ATOM 23 N3 G A 280 55.497 123.753 3.564 1.00 66.65 N
ATOM 24 C4 G A 280 55.797 124.979 3.089 1.00 68.26 C
ATOM 25 P A A 281 50.873 128.638 3.733 1.00 76.61 P
ATOM 26 OP1 A A 281 49.577 129.370 3.667 1.00 75.54 O
ATOM 27 OP2 A A 281 52.126 129.390 4.020 1.00 75.26 O
ATOM 28 O5' A A 281 50.743 127.470 4.811 1.00 75.35 O
TER
ATOM 1 O3' C B 278 61.607 128.800 -1.833 1.00 79.59 O
ATOM 2 P C B 279 60.529 129.286 -0.746 1.00 78.93 P
ATOM 3 OP1 C B 279 60.337 130.746 -0.927 1.00 78.72 O
ATOM 4 OP2 C B 279 60.961 128.762 0.575 1.00 79.46 O
ATOM 5 O5' C B 279 59.176 128.561 -1.183 1.00 77.64 O
ATOM 6 C5' C B 279 58.566 128.849 -2.458 1.00 76.78 C
ATOM 7 C4' C B 279 57.379 127.942 -2.699 1.00 76.78 C
ATOM 8 O4' C B 279 57.804 126.553 -2.708 1.00 77.84 O
ATOM 9 C3' C B 279 56.277 127.988 -1.656 1.00 75.86 C
ATOM 10 O3' C B 279 55.400 129.077 -1.902 1.00 75.04 O
ATOM 11 C2' C B 279 55.579 126.649 -1.863 1.00 76.67 C
ATOM 12 O2' C B 279 54.693 126.653 -2.966 1.00 76.15 O
ATOM 13 C1' C B 279 56.768 125.734 -2.179 1.00 76.89 C
ATOM 14 N1 C B 279 57.291 124.993 -1.009 1.00 75.92 N
ATOM 15 C2 C B 279 56.525 123.941 -0.466 1.00 74.98 C
ATOM 16 O2 C B 279 55.419 123.673 -0.967 1.00 74.17 O
ATOM 17 N3 C B 279 57.012 123.251 0.590 1.00 74.76 N
ATOM 18 C4 C B 279 58.200 123.573 1.111 1.00 75.59 C
ATOM 19 N4 C B 279 58.646 122.859 2.150 1.00 76.23 N
ATOM 20 C5 C B 279 58.989 124.641 0.589 1.00 74.88 C
ATOM 21 C6 C B 279 58.503 125.315 -0.459 1.00 75.08 C
ATOM 22 P G B 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 23 OP1 G B 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 24 OP2 G B 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 25 O5' G B 280 54.028 128.814 0.187 1.00 75.09 O
TER
Atoms:
OP1: (53.798,130.866,-1.219)
OP2: (55.946,130.426,0.127)
C3': (52.328,127.280,2.023)
C1': (53.688,125.381,1.744)
C5': (52.842,128.173,-0.326)
O6: (59.012,125.744,4.499)
O4': (53.527,125.994,0.474)
C8: (55.701,126.906,2.026)
C2: (56.450,123.281,4.352)
C6: (57.940,125.221,4.170)
C5: (56.923,125.742,3.323)
C4: (55.797,124.979,3.089)
P: (54.802,129.911,-0.670)
C4': (52.469,126.990,0.538)
C2': (52.561,125.906,2.634)
O2': (51.447,125.046,2.511)
N1: (57.608,123.958,4.650)
N2: (56.310,122.075,4.910)
N3: (55.497,123.753,3.564)
N7: (56.848,126.952,2.646)
N9: (55.007,125.740,2.258)
O5': (54.028,128.814,0.187)
O3': (51.061,127.844,2.346)
OP2: (55.946,130.426,0.127)
C3': (52.328,127.280,2.023)
C1': (53.688,125.381,1.744)
C5': (52.842,128.173,-0.326)
O6: (59.012,125.744,4.499)
O4': (53.527,125.994,0.474)
C8: (55.701,126.906,2.026)
C2: (56.450,123.281,4.352)
C6: (57.940,125.221,4.170)
C5: (56.923,125.742,3.323)
C4: (55.797,124.979,3.089)
P: (54.802,129.911,-0.670)
C4': (52.469,126.990,0.538)
C2': (52.561,125.906,2.634)
O2': (51.447,125.046,2.511)
N1: (57.608,123.958,4.650)
N2: (56.310,122.075,4.910)
N3: (55.497,123.753,3.564)
N7: (56.848,126.952,2.646)
N9: (55.007,125.740,2.258)
O5': (54.028,128.814,0.187)
O3': (51.061,127.844,2.346)
C2: (56.525,123.941,-0.466)
OP1: (60.337,130.746,-0.927)
OP2: (60.961,128.762,0.575)
C4: (58.200,123.573,1.111)
O5': (59.176,128.561,-1.183)
C3': (56.277,127.988,-1.656)
C1': (56.768,125.734,-2.179)
O4': (57.804,126.553,-2.708)
C5': (58.566,128.849,-2.458)
P: (60.529,129.286,-0.746)
O2: (55.419,123.673,-0.967)
C4': (57.379,127.942,-2.699)
C2': (55.579,126.649,-1.863)
O2': (54.693,126.653,-2.966)
N1: (57.291,124.993,-1.009)
N3: (57.012,123.251,0.590)
N4: (58.646,122.859,2.150)
C6: (58.503,125.315,-0.459)
C5: (58.989,124.641,0.589)
O3': (55.400,129.077,-1.902)
OP1: (60.337,130.746,-0.927)
OP2: (60.961,128.762,0.575)
C4: (58.200,123.573,1.111)
O5': (59.176,128.561,-1.183)
C3': (56.277,127.988,-1.656)
C1': (56.768,125.734,-2.179)
O4': (57.804,126.553,-2.708)
C5': (58.566,128.849,-2.458)
P: (60.529,129.286,-0.746)
O2: (55.419,123.673,-0.967)
C4': (57.379,127.942,-2.699)
C2': (55.579,126.649,-1.863)
O2': (54.693,126.653,-2.966)
N1: (57.291,124.993,-1.009)
N3: (57.012,123.251,0.590)
N4: (58.646,122.859,2.150)
C6: (58.503,125.315,-0.459)
C5: (58.989,124.641,0.589)
O3': (55.400,129.077,-1.902)
Image (generated by PyMOL):