Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0235:0253
Extra
PDB:
ATOM 1 O3' G A 234 94.162 118.005 -7.854 1.00 67.33 O
ATOM 2 P A A 235 94.751 119.007 -8.961 1.00 65.19 P
ATOM 3 OP1 A A 235 94.353 118.484 -10.293 1.00 66.10 O
ATOM 4 OP2 A A 235 96.196 119.209 -8.652 1.00 62.56 O
ATOM 5 O5' A A 235 93.948 120.356 -8.707 1.00 62.29 O
ATOM 6 C5' A A 235 92.543 120.452 -9.022 1.00 62.82 C
ATOM 7 C4' A A 235 91.928 121.612 -8.273 1.00 63.81 C
ATOM 8 O4' A A 235 91.828 121.282 -6.856 1.00 63.20 O
ATOM 9 C3' A A 235 92.739 122.903 -8.343 1.00 63.34 C
ATOM 10 O3' A A 235 91.861 124.014 -8.229 1.00 64.91 O
ATOM 11 C2' A A 235 93.584 122.809 -7.080 1.00 62.75 C
ATOM 12 O2' A A 235 94.090 124.045 -6.628 1.00 60.92 O
ATOM 13 C1' A A 235 92.563 122.226 -6.104 1.00 63.15 C
ATOM 14 N9 A A 235 93.141 121.557 -4.940 1.00 63.22 N
ATOM 15 C8 A A 235 93.891 120.404 -4.894 1.00 63.24 C
ATOM 16 N7 A A 235 94.279 120.077 -3.686 1.00 62.65 N
ATOM 17 C5 A A 235 93.744 121.075 -2.882 1.00 61.15 C
ATOM 18 C6 A A 235 93.797 121.303 -1.500 1.00 59.05 C
ATOM 19 N6 A A 235 94.446 120.514 -0.645 1.00 57.71 N
ATOM 20 N1 A A 235 93.156 122.386 -1.019 1.00 59.11 N
ATOM 21 C2 A A 235 92.512 123.183 -1.876 1.00 60.78 C
ATOM 22 N3 A A 235 92.391 123.077 -3.193 1.00 61.93 N
ATOM 23 C4 A A 235 93.038 121.989 -3.640 1.00 61.74 C
ATOM 24 P A A 236 91.372 124.784 -9.546 1.00 67.08 P
ATOM 25 OP1 A A 236 92.432 124.634 -10.579 1.00 66.75 O
ATOM 26 OP2 A A 236 90.933 126.143 -9.124 1.00 65.96 O
ATOM 27 O5' A A 236 90.078 123.979 -10.021 1.00 64.75 O
TER
ATOM 1 O3' G B 252 91.599 119.667 3.431 1.00 53.30 O
ATOM 2 P U B 253 90.299 119.504 4.355 1.00 52.50 P
ATOM 3 OP1 U B 253 90.641 120.091 5.671 1.00 52.75 O
ATOM 4 OP2 U B 253 89.851 118.089 4.277 1.00 52.02 O
ATOM 5 O5' U B 253 89.204 120.422 3.654 1.00 52.01 O
ATOM 6 C5' U B 253 89.022 121.796 4.048 1.00 52.18 C
ATOM 7 C4' U B 253 88.583 122.618 2.863 1.00 53.24 C
ATOM 8 O4' U B 253 89.697 122.805 1.948 1.00 53.08 O
ATOM 9 C3' U B 253 87.512 121.955 2.021 1.00 53.64 C
ATOM 10 O3' U B 253 86.217 122.155 2.570 1.00 53.14 O
ATOM 11 C2' U B 253 87.709 122.609 0.660 1.00 52.56 C
ATOM 12 O2' U B 253 87.121 123.893 0.575 1.00 53.87 O
ATOM 13 C1' U B 253 89.235 122.728 0.609 1.00 51.60 C
ATOM 14 N1 U B 253 89.896 121.581 -0.034 1.00 51.63 N
ATOM 15 C2 U B 253 89.706 121.393 -1.398 1.00 51.64 C
ATOM 16 O2 U B 253 89.032 122.146 -2.090 1.00 53.20 O
ATOM 17 N3 U B 253 90.338 120.294 -1.923 1.00 50.02 N
ATOM 18 C4 U B 253 91.128 119.387 -1.248 1.00 51.49 C
ATOM 19 O4 U B 253 91.609 118.432 -1.859 1.00 52.35 O
ATOM 20 C5 U B 253 91.288 119.655 0.151 1.00 51.12 C
ATOM 21 C6 U B 253 90.683 120.712 0.696 1.00 50.13 C
ATOM 22 P G B 254 85.149 120.962 2.523 1.00 54.13 P
ATOM 23 OP1 G B 254 83.828 121.535 2.913 1.00 53.15 O
ATOM 24 OP2 G B 254 85.708 119.806 3.275 1.00 53.58 O
ATOM 25 O5' G B 254 85.081 120.550 0.984 1.00 55.41 O
TER
ATOM 2 P A A 235 94.751 119.007 -8.961 1.00 65.19 P
ATOM 3 OP1 A A 235 94.353 118.484 -10.293 1.00 66.10 O
ATOM 4 OP2 A A 235 96.196 119.209 -8.652 1.00 62.56 O
ATOM 5 O5' A A 235 93.948 120.356 -8.707 1.00 62.29 O
ATOM 6 C5' A A 235 92.543 120.452 -9.022 1.00 62.82 C
ATOM 7 C4' A A 235 91.928 121.612 -8.273 1.00 63.81 C
ATOM 8 O4' A A 235 91.828 121.282 -6.856 1.00 63.20 O
ATOM 9 C3' A A 235 92.739 122.903 -8.343 1.00 63.34 C
ATOM 10 O3' A A 235 91.861 124.014 -8.229 1.00 64.91 O
ATOM 11 C2' A A 235 93.584 122.809 -7.080 1.00 62.75 C
ATOM 12 O2' A A 235 94.090 124.045 -6.628 1.00 60.92 O
ATOM 13 C1' A A 235 92.563 122.226 -6.104 1.00 63.15 C
ATOM 14 N9 A A 235 93.141 121.557 -4.940 1.00 63.22 N
ATOM 15 C8 A A 235 93.891 120.404 -4.894 1.00 63.24 C
ATOM 16 N7 A A 235 94.279 120.077 -3.686 1.00 62.65 N
ATOM 17 C5 A A 235 93.744 121.075 -2.882 1.00 61.15 C
ATOM 18 C6 A A 235 93.797 121.303 -1.500 1.00 59.05 C
ATOM 19 N6 A A 235 94.446 120.514 -0.645 1.00 57.71 N
ATOM 20 N1 A A 235 93.156 122.386 -1.019 1.00 59.11 N
ATOM 21 C2 A A 235 92.512 123.183 -1.876 1.00 60.78 C
ATOM 22 N3 A A 235 92.391 123.077 -3.193 1.00 61.93 N
ATOM 23 C4 A A 235 93.038 121.989 -3.640 1.00 61.74 C
ATOM 24 P A A 236 91.372 124.784 -9.546 1.00 67.08 P
ATOM 25 OP1 A A 236 92.432 124.634 -10.579 1.00 66.75 O
ATOM 26 OP2 A A 236 90.933 126.143 -9.124 1.00 65.96 O
ATOM 27 O5' A A 236 90.078 123.979 -10.021 1.00 64.75 O
TER
ATOM 1 O3' G B 252 91.599 119.667 3.431 1.00 53.30 O
ATOM 2 P U B 253 90.299 119.504 4.355 1.00 52.50 P
ATOM 3 OP1 U B 253 90.641 120.091 5.671 1.00 52.75 O
ATOM 4 OP2 U B 253 89.851 118.089 4.277 1.00 52.02 O
ATOM 5 O5' U B 253 89.204 120.422 3.654 1.00 52.01 O
ATOM 6 C5' U B 253 89.022 121.796 4.048 1.00 52.18 C
ATOM 7 C4' U B 253 88.583 122.618 2.863 1.00 53.24 C
ATOM 8 O4' U B 253 89.697 122.805 1.948 1.00 53.08 O
ATOM 9 C3' U B 253 87.512 121.955 2.021 1.00 53.64 C
ATOM 10 O3' U B 253 86.217 122.155 2.570 1.00 53.14 O
ATOM 11 C2' U B 253 87.709 122.609 0.660 1.00 52.56 C
ATOM 12 O2' U B 253 87.121 123.893 0.575 1.00 53.87 O
ATOM 13 C1' U B 253 89.235 122.728 0.609 1.00 51.60 C
ATOM 14 N1 U B 253 89.896 121.581 -0.034 1.00 51.63 N
ATOM 15 C2 U B 253 89.706 121.393 -1.398 1.00 51.64 C
ATOM 16 O2 U B 253 89.032 122.146 -2.090 1.00 53.20 O
ATOM 17 N3 U B 253 90.338 120.294 -1.923 1.00 50.02 N
ATOM 18 C4 U B 253 91.128 119.387 -1.248 1.00 51.49 C
ATOM 19 O4 U B 253 91.609 118.432 -1.859 1.00 52.35 O
ATOM 20 C5 U B 253 91.288 119.655 0.151 1.00 51.12 C
ATOM 21 C6 U B 253 90.683 120.712 0.696 1.00 50.13 C
ATOM 22 P G B 254 85.149 120.962 2.523 1.00 54.13 P
ATOM 23 OP1 G B 254 83.828 121.535 2.913 1.00 53.15 O
ATOM 24 OP2 G B 254 85.708 119.806 3.275 1.00 53.58 O
ATOM 25 O5' G B 254 85.081 120.550 0.984 1.00 55.41 O
TER
Atoms:
OP1: (94.353,118.484,-10.293)
OP2: (96.196,119.209,-8.652)
C3': (92.739,122.903,-8.343)
C1': (92.563,122.226,-6.104)
C5': (92.543,120.452,-9.022)
O4': (91.828,121.282,-6.856)
C8: (93.891,120.404,-4.894)
O2': (94.090,124.045,-6.628)
C6: (93.797,121.303,-1.500)
C5: (93.744,121.075,-2.882)
C4: (93.038,121.989,-3.640)
P: (94.751,119.007,-8.961)
C4': (91.928,121.612,-8.273)
C2': (93.584,122.809,-7.080)
C2: (92.512,123.183,-1.876)
N1: (93.156,122.386,-1.019)
N3: (92.391,123.077,-3.193)
N6: (94.446,120.514,-0.645)
N7: (94.279,120.077,-3.686)
N9: (93.141,121.557,-4.940)
O5': (93.948,120.356,-8.707)
O3': (91.861,124.014,-8.229)
OP2: (96.196,119.209,-8.652)
C3': (92.739,122.903,-8.343)
C1': (92.563,122.226,-6.104)
C5': (92.543,120.452,-9.022)
O4': (91.828,121.282,-6.856)
C8: (93.891,120.404,-4.894)
O2': (94.090,124.045,-6.628)
C6: (93.797,121.303,-1.500)
C5: (93.744,121.075,-2.882)
C4: (93.038,121.989,-3.640)
P: (94.751,119.007,-8.961)
C4': (91.928,121.612,-8.273)
C2': (93.584,122.809,-7.080)
C2: (92.512,123.183,-1.876)
N1: (93.156,122.386,-1.019)
N3: (92.391,123.077,-3.193)
N6: (94.446,120.514,-0.645)
N7: (94.279,120.077,-3.686)
N9: (93.141,121.557,-4.940)
O5': (93.948,120.356,-8.707)
O3': (91.861,124.014,-8.229)
C4: (91.128,119.387,-1.248)
N3: (90.338,120.294,-1.923)
OP1: (90.641,120.091,5.671)
OP2: (89.851,118.089,4.277)
C2: (89.706,121.393,-1.398)
C1': (89.235,122.728,0.609)
C3': (87.512,121.955,2.021)
O5': (89.204,120.422,3.654)
O4': (89.697,122.805,1.948)
C5': (89.022,121.796,4.048)
P: (90.299,119.504,4.355)
C4': (88.583,122.618,2.863)
C2': (87.709,122.609,0.660)
O2': (87.121,123.893,0.575)
N1: (89.896,121.581,-0.034)
O4: (91.609,118.432,-1.859)
O2: (89.032,122.146,-2.090)
C6: (90.683,120.712,0.696)
C5: (91.288,119.655,0.151)
O3': (86.217,122.155,2.570)
N3: (90.338,120.294,-1.923)
OP1: (90.641,120.091,5.671)
OP2: (89.851,118.089,4.277)
C2: (89.706,121.393,-1.398)
C1': (89.235,122.728,0.609)
C3': (87.512,121.955,2.021)
O5': (89.204,120.422,3.654)
O4': (89.697,122.805,1.948)
C5': (89.022,121.796,4.048)
P: (90.299,119.504,4.355)
C4': (88.583,122.618,2.863)
C2': (87.709,122.609,0.660)
O2': (87.121,123.893,0.575)
N1: (89.896,121.581,-0.034)
O4: (91.609,118.432,-1.859)
O2: (89.032,122.146,-2.090)
C6: (90.683,120.712,0.696)
C5: (91.288,119.655,0.151)
O3': (86.217,122.155,2.570)
Image (generated by PyMOL):