Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1335:A1390
Extra
PDB:
ATOM 1 O3' G A1334 -4.140 -50.609 32.612 1.00 0.01 O
ATOM 2 P A A1335 -4.836 -49.598 33.605 1.00 0.01 P
ATOM 3 OP1 A A1335 -4.157 -49.714 34.904 1.00 0.01 O
ATOM 4 OP2 A A1335 -6.269 -49.873 33.540 1.00 0.01 O
ATOM 5 O5' A A1335 -4.514 -48.202 32.922 1.00 0.01 O
ATOM 6 C5' A A1335 -3.169 -47.777 32.752 1.00 0.01 C
ATOM 7 C4' A A1335 -3.063 -46.301 32.426 1.00 0.01 C
ATOM 8 O4' A A1335 -3.833 -46.027 31.236 1.00 0.01 O
ATOM 9 C3' A A1335 -3.586 -45.326 33.484 1.00 0.01 C
ATOM 10 O3' A A1335 -2.881 -44.092 33.363 1.00 0.01 O
ATOM 11 C2' A A1335 -5.011 -45.093 33.022 1.00 0.01 C
ATOM 12 O2' A A1335 -5.589 -43.896 33.488 1.00 0.01 O
ATOM 13 C1' A A1335 -4.812 -45.054 31.521 1.00 0.01 C
ATOM 14 N9 A A1335 -5.991 -45.384 30.747 1.00 0.01 N
ATOM 15 C8 A A1335 -6.948 -46.346 30.920 1.00 0.01 C
ATOM 16 N7 A A1335 -7.849 -46.356 29.966 1.00 0.01 N
ATOM 17 C5 A A1335 -7.427 -45.355 29.112 1.00 0.01 C
ATOM 18 C6 A A1335 -7.931 -44.852 27.930 1.00 0.01 C
ATOM 19 N6 A A1335 -9.017 -45.275 27.303 1.00 0.01 N
ATOM 20 N1 A A1335 -7.254 -43.872 27.358 1.00 0.01 N
ATOM 21 C2 A A1335 -6.149 -43.415 27.933 1.00 0.01 C
ATOM 22 N3 A A1335 -5.574 -43.781 29.052 1.00 0.01 N
ATOM 23 C4 A A1335 -6.282 -44.768 29.582 1.00 0.01 C
ATOM 24 P G A1336 -1.644 -43.736 34.316 1.00 0.01 P
ATOM 25 OP1 G A1336 -0.479 -43.403 33.418 1.00 0.01 O
ATOM 26 OP2 G A1336 -1.515 -44.856 35.280 1.00 0.01 O
ATOM 27 O5' G A1336 -2.163 -42.419 35.067 1.00 0.01 O
TER
ATOM 1 O3' U B1389 -2.301 -43.777 24.364 1.00 12.13 O
ATOM 2 P U B1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 3 OP1 U B1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 4 OP2 U B1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 5 O5' U B1390 -2.248 -45.700 25.951 1.00 0.01 O
ATOM 6 C5' U B1390 -2.082 -45.164 27.262 1.00 0.01 C
ATOM 7 C4' U B1390 -2.343 -46.180 28.367 1.00 0.01 C
ATOM 8 O4' U B1390 -3.766 -46.407 28.487 1.00 0.01 O
ATOM 9 C3' U B1390 -1.710 -47.555 28.190 1.00 0.01 C
ATOM 10 O3' U B1390 -1.257 -48.035 29.459 1.00 0.01 O
ATOM 11 C2' U B1390 -2.874 -48.396 27.681 1.00 0.01 C
ATOM 12 O2' U B1390 -2.784 -49.771 27.939 1.00 0.01 O
ATOM 13 C1' U B1390 -4.043 -47.774 28.406 1.00 0.01 C
ATOM 14 N1 U B1390 -5.273 -47.905 27.694 1.00 0.06 N
ATOM 15 C2 U B1390 -6.288 -48.547 28.287 1.00 0.06 C
ATOM 16 O2 U B1390 -6.191 -48.994 29.399 1.00 0.06 O
ATOM 17 N3 U B1390 -7.407 -48.640 27.533 1.00 0.06 N
ATOM 18 C4 U B1390 -7.596 -48.141 26.274 1.00 0.06 C
ATOM 19 O4 U B1390 -8.676 -48.307 25.728 1.00 0.06 O
ATOM 20 C5 U B1390 -6.479 -47.481 25.711 1.00 0.06 C
ATOM 21 C6 U B1390 -5.374 -47.392 26.444 1.00 0.06 C
ATOM 22 P C B1391 0.300 -47.886 29.864 1.00 0.01 P
ATOM 23 OP1 C B1391 0.411 -48.055 31.326 1.00 0.01 O
ATOM 24 OP2 C B1391 0.778 -46.629 29.279 1.00 0.01 O
ATOM 25 O5' C B1391 0.968 -49.128 29.136 1.00 0.01 O
TER
ATOM 2 P A A1335 -4.836 -49.598 33.605 1.00 0.01 P
ATOM 3 OP1 A A1335 -4.157 -49.714 34.904 1.00 0.01 O
ATOM 4 OP2 A A1335 -6.269 -49.873 33.540 1.00 0.01 O
ATOM 5 O5' A A1335 -4.514 -48.202 32.922 1.00 0.01 O
ATOM 6 C5' A A1335 -3.169 -47.777 32.752 1.00 0.01 C
ATOM 7 C4' A A1335 -3.063 -46.301 32.426 1.00 0.01 C
ATOM 8 O4' A A1335 -3.833 -46.027 31.236 1.00 0.01 O
ATOM 9 C3' A A1335 -3.586 -45.326 33.484 1.00 0.01 C
ATOM 10 O3' A A1335 -2.881 -44.092 33.363 1.00 0.01 O
ATOM 11 C2' A A1335 -5.011 -45.093 33.022 1.00 0.01 C
ATOM 12 O2' A A1335 -5.589 -43.896 33.488 1.00 0.01 O
ATOM 13 C1' A A1335 -4.812 -45.054 31.521 1.00 0.01 C
ATOM 14 N9 A A1335 -5.991 -45.384 30.747 1.00 0.01 N
ATOM 15 C8 A A1335 -6.948 -46.346 30.920 1.00 0.01 C
ATOM 16 N7 A A1335 -7.849 -46.356 29.966 1.00 0.01 N
ATOM 17 C5 A A1335 -7.427 -45.355 29.112 1.00 0.01 C
ATOM 18 C6 A A1335 -7.931 -44.852 27.930 1.00 0.01 C
ATOM 19 N6 A A1335 -9.017 -45.275 27.303 1.00 0.01 N
ATOM 20 N1 A A1335 -7.254 -43.872 27.358 1.00 0.01 N
ATOM 21 C2 A A1335 -6.149 -43.415 27.933 1.00 0.01 C
ATOM 22 N3 A A1335 -5.574 -43.781 29.052 1.00 0.01 N
ATOM 23 C4 A A1335 -6.282 -44.768 29.582 1.00 0.01 C
ATOM 24 P G A1336 -1.644 -43.736 34.316 1.00 0.01 P
ATOM 25 OP1 G A1336 -0.479 -43.403 33.418 1.00 0.01 O
ATOM 26 OP2 G A1336 -1.515 -44.856 35.280 1.00 0.01 O
ATOM 27 O5' G A1336 -2.163 -42.419 35.067 1.00 0.01 O
TER
ATOM 1 O3' U B1389 -2.301 -43.777 24.364 1.00 12.13 O
ATOM 2 P U B1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 3 OP1 U B1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 4 OP2 U B1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 5 O5' U B1390 -2.248 -45.700 25.951 1.00 0.01 O
ATOM 6 C5' U B1390 -2.082 -45.164 27.262 1.00 0.01 C
ATOM 7 C4' U B1390 -2.343 -46.180 28.367 1.00 0.01 C
ATOM 8 O4' U B1390 -3.766 -46.407 28.487 1.00 0.01 O
ATOM 9 C3' U B1390 -1.710 -47.555 28.190 1.00 0.01 C
ATOM 10 O3' U B1390 -1.257 -48.035 29.459 1.00 0.01 O
ATOM 11 C2' U B1390 -2.874 -48.396 27.681 1.00 0.01 C
ATOM 12 O2' U B1390 -2.784 -49.771 27.939 1.00 0.01 O
ATOM 13 C1' U B1390 -4.043 -47.774 28.406 1.00 0.01 C
ATOM 14 N1 U B1390 -5.273 -47.905 27.694 1.00 0.06 N
ATOM 15 C2 U B1390 -6.288 -48.547 28.287 1.00 0.06 C
ATOM 16 O2 U B1390 -6.191 -48.994 29.399 1.00 0.06 O
ATOM 17 N3 U B1390 -7.407 -48.640 27.533 1.00 0.06 N
ATOM 18 C4 U B1390 -7.596 -48.141 26.274 1.00 0.06 C
ATOM 19 O4 U B1390 -8.676 -48.307 25.728 1.00 0.06 O
ATOM 20 C5 U B1390 -6.479 -47.481 25.711 1.00 0.06 C
ATOM 21 C6 U B1390 -5.374 -47.392 26.444 1.00 0.06 C
ATOM 22 P C B1391 0.300 -47.886 29.864 1.00 0.01 P
ATOM 23 OP1 C B1391 0.411 -48.055 31.326 1.00 0.01 O
ATOM 24 OP2 C B1391 0.778 -46.629 29.279 1.00 0.01 O
ATOM 25 O5' C B1391 0.968 -49.128 29.136 1.00 0.01 O
TER
Atoms:
OP1: (-4.157,-49.714,34.904)
OP2: (-6.269,-49.873,33.540)
C3': (-3.586,-45.326,33.484)
C1': (-4.812,-45.054,31.521)
C5': (-3.169,-47.777,32.752)
O4': (-3.833,-46.027,31.236)
C8: (-6.948,-46.346,30.920)
O2': (-5.589,-43.896,33.488)
C6: (-7.931,-44.852,27.930)
C5: (-7.427,-45.355,29.112)
C4: (-6.282,-44.768,29.582)
P: (-4.836,-49.598,33.605)
C4': (-3.063,-46.301,32.426)
C2': (-5.011,-45.093,33.022)
C2: (-6.149,-43.415,27.933)
N1: (-7.254,-43.872,27.358)
N3: (-5.574,-43.781,29.052)
N6: (-9.017,-45.275,27.303)
N7: (-7.849,-46.356,29.966)
N9: (-5.991,-45.384,30.747)
O5': (-4.514,-48.202,32.922)
O3': (-2.881,-44.092,33.363)
OP2: (-6.269,-49.873,33.540)
C3': (-3.586,-45.326,33.484)
C1': (-4.812,-45.054,31.521)
C5': (-3.169,-47.777,32.752)
O4': (-3.833,-46.027,31.236)
C8: (-6.948,-46.346,30.920)
O2': (-5.589,-43.896,33.488)
C6: (-7.931,-44.852,27.930)
C5: (-7.427,-45.355,29.112)
C4: (-6.282,-44.768,29.582)
P: (-4.836,-49.598,33.605)
C4': (-3.063,-46.301,32.426)
C2': (-5.011,-45.093,33.022)
C2: (-6.149,-43.415,27.933)
N1: (-7.254,-43.872,27.358)
N3: (-5.574,-43.781,29.052)
N6: (-9.017,-45.275,27.303)
N7: (-7.849,-46.356,29.966)
N9: (-5.991,-45.384,30.747)
O5': (-4.514,-48.202,32.922)
O3': (-2.881,-44.092,33.363)
C4: (-7.596,-48.141,26.274)
N3: (-7.407,-48.640,27.533)
OP1: (-0.148,-44.626,25.181)
OP2: (-1.527,-45.951,23.566)
C2: (-6.288,-48.547,28.287)
C1': (-4.043,-47.774,28.406)
C3': (-1.710,-47.555,28.190)
O5': (-2.248,-45.700,25.951)
O4': (-3.766,-46.407,28.487)
C5': (-2.082,-45.164,27.262)
P: (-1.454,-45.073,24.725)
C4': (-2.343,-46.180,28.367)
C2': (-2.874,-48.396,27.681)
O2': (-2.784,-49.771,27.939)
N1: (-5.273,-47.905,27.694)
O4: (-8.676,-48.307,25.728)
O2: (-6.191,-48.994,29.399)
C6: (-5.374,-47.392,26.444)
C5: (-6.479,-47.481,25.711)
O3': (-1.257,-48.035,29.459)
N3: (-7.407,-48.640,27.533)
OP1: (-0.148,-44.626,25.181)
OP2: (-1.527,-45.951,23.566)
C2: (-6.288,-48.547,28.287)
C1': (-4.043,-47.774,28.406)
C3': (-1.710,-47.555,28.190)
O5': (-2.248,-45.700,25.951)
O4': (-3.766,-46.407,28.487)
C5': (-2.082,-45.164,27.262)
P: (-1.454,-45.073,24.725)
C4': (-2.343,-46.180,28.367)
C2': (-2.874,-48.396,27.681)
O2': (-2.784,-49.771,27.939)
N1: (-5.273,-47.905,27.694)
O4: (-8.676,-48.307,25.728)
O2: (-6.191,-48.994,29.399)
C6: (-5.374,-47.392,26.444)
C5: (-6.479,-47.481,25.711)
O3': (-1.257,-48.035,29.459)
Image (generated by PyMOL):