Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X124:X125
Extra
PDB:
ATOM 1 O3' U A 123 -12.281 -5.855 26.299 1.00 31.44 O
ATOM 2 P A A 124 -10.786 -5.262 26.384 1.00 30.48 P
ATOM 3 OP1 A A 124 -11.019 -3.941 27.020 1.00 31.54 O
ATOM 4 OP2 A A 124 -10.105 -5.330 25.064 1.00 27.44 O
ATOM 5 O5' A A 124 -10.064 -6.259 27.391 1.00 26.65 O
ATOM 6 C5' A A 124 -10.653 -6.654 28.618 1.00 28.74 C
ATOM 7 C4' A A 124 -9.769 -7.617 29.391 1.00 23.74 C
ATOM 8 O4' A A 124 -9.672 -8.924 28.748 1.00 25.57 O
ATOM 9 C3' A A 124 -8.308 -7.237 29.588 1.00 21.38 C
ATOM 10 O3' A A 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 11 C2' A A 124 -7.734 -8.557 30.093 1.00 23.59 C
ATOM 12 O2' A A 124 -8.132 -8.847 31.419 1.00 23.63 O
ATOM 13 C1' A A 124 -8.491 -9.556 29.236 1.00 22.56 C
ATOM 14 N9 A A 124 -7.611 -10.123 28.203 1.00 29.19 N
ATOM 15 C8 A A 124 -6.517 -10.967 28.378 1.00 22.85 C
ATOM 16 N7 A A 124 -5.903 -11.344 27.293 1.00 25.58 N
ATOM 17 C5 A A 124 -6.678 -10.675 26.353 1.00 25.41 C
ATOM 18 C6 A A 124 -6.596 -10.638 24.980 1.00 28.13 C
ATOM 19 N6 A A 124 -5.683 -11.274 24.242 1.00 23.71 N
ATOM 20 N1 A A 124 -7.524 -9.876 24.389 1.00 31.87 N
ATOM 21 C2 A A 124 -8.459 -9.223 25.069 1.00 27.35 C
ATOM 22 N3 A A 124 -8.656 -9.175 26.360 1.00 26.94 N
ATOM 23 C4 A A 124 -7.708 -9.928 26.901 1.00 24.48 C
ATOM 24 P U A 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 25 OP1 U A 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 26 OP2 U A 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 27 O5' U A 125 -5.579 -5.858 30.288 1.00 21.95 O
TER
ATOM 1 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 2 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 3 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 4 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 5 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
ATOM 6 C5' U B 125 -5.138 -6.541 31.451 1.00 25.63 C
ATOM 7 C4' U B 125 -4.032 -7.504 31.103 1.00 24.85 C
ATOM 8 O4' U B 125 -4.530 -8.490 30.170 1.00 24.85 O
ATOM 9 C3' U B 125 -2.829 -6.899 30.400 1.00 23.98 C
ATOM 10 O3' U B 125 -1.923 -6.317 31.314 1.00 27.26 O
ATOM 11 C2' U B 125 -2.249 -8.081 29.644 1.00 27.28 C
ATOM 12 O2' U B 125 -1.473 -8.905 30.500 1.00 29.81 O
ATOM 13 C1' U B 125 -3.509 -8.856 29.273 1.00 24.56 C
ATOM 14 N1 U B 125 -3.937 -8.543 27.907 1.00 25.27 N
ATOM 15 C2 U B 125 -3.256 -9.215 26.920 1.00 24.50 C
ATOM 16 O2 U B 125 -2.366 -10.005 27.175 1.00 25.30 O
ATOM 17 N3 U B 125 -3.653 -8.923 25.648 1.00 23.28 N
ATOM 18 C4 U B 125 -4.650 -8.035 25.290 1.00 24.22 C
ATOM 19 O4 U B 125 -4.902 -7.878 24.101 1.00 25.39 O
ATOM 20 C5 U B 125 -5.317 -7.377 26.379 1.00 25.18 C
ATOM 21 C6 U B 125 -4.937 -7.641 27.638 1.00 22.80 C
ATOM 22 P G B 126 -1.620 -4.745 31.240 1.00 32.46 P
ATOM 23 OP1 G B 126 -1.069 -4.502 32.593 1.00 36.68 O
ATOM 24 OP2 G B 126 -2.826 -4.003 30.786 1.00 30.17 O
ATOM 25 O5' G B 126 -0.530 -4.591 30.084 1.00 33.50 O
TER
ATOM 2 P A A 124 -10.786 -5.262 26.384 1.00 30.48 P
ATOM 3 OP1 A A 124 -11.019 -3.941 27.020 1.00 31.54 O
ATOM 4 OP2 A A 124 -10.105 -5.330 25.064 1.00 27.44 O
ATOM 5 O5' A A 124 -10.064 -6.259 27.391 1.00 26.65 O
ATOM 6 C5' A A 124 -10.653 -6.654 28.618 1.00 28.74 C
ATOM 7 C4' A A 124 -9.769 -7.617 29.391 1.00 23.74 C
ATOM 8 O4' A A 124 -9.672 -8.924 28.748 1.00 25.57 O
ATOM 9 C3' A A 124 -8.308 -7.237 29.588 1.00 21.38 C
ATOM 10 O3' A A 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 11 C2' A A 124 -7.734 -8.557 30.093 1.00 23.59 C
ATOM 12 O2' A A 124 -8.132 -8.847 31.419 1.00 23.63 O
ATOM 13 C1' A A 124 -8.491 -9.556 29.236 1.00 22.56 C
ATOM 14 N9 A A 124 -7.611 -10.123 28.203 1.00 29.19 N
ATOM 15 C8 A A 124 -6.517 -10.967 28.378 1.00 22.85 C
ATOM 16 N7 A A 124 -5.903 -11.344 27.293 1.00 25.58 N
ATOM 17 C5 A A 124 -6.678 -10.675 26.353 1.00 25.41 C
ATOM 18 C6 A A 124 -6.596 -10.638 24.980 1.00 28.13 C
ATOM 19 N6 A A 124 -5.683 -11.274 24.242 1.00 23.71 N
ATOM 20 N1 A A 124 -7.524 -9.876 24.389 1.00 31.87 N
ATOM 21 C2 A A 124 -8.459 -9.223 25.069 1.00 27.35 C
ATOM 22 N3 A A 124 -8.656 -9.175 26.360 1.00 26.94 N
ATOM 23 C4 A A 124 -7.708 -9.928 26.901 1.00 24.48 C
ATOM 24 P U A 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 25 OP1 U A 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 26 OP2 U A 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 27 O5' U A 125 -5.579 -5.858 30.288 1.00 21.95 O
TER
ATOM 1 O3' A B 124 -8.095 -6.173 30.496 1.00 21.92 O
ATOM 2 P U B 125 -6.951 -5.066 30.278 1.00 23.53 P
ATOM 3 OP1 U B 125 -7.064 -4.294 31.550 1.00 24.38 O
ATOM 4 OP2 U B 125 -7.161 -4.418 28.963 1.00 26.40 O
ATOM 5 O5' U B 125 -5.579 -5.858 30.288 1.00 21.95 O
ATOM 6 C5' U B 125 -5.138 -6.541 31.451 1.00 25.63 C
ATOM 7 C4' U B 125 -4.032 -7.504 31.103 1.00 24.85 C
ATOM 8 O4' U B 125 -4.530 -8.490 30.170 1.00 24.85 O
ATOM 9 C3' U B 125 -2.829 -6.899 30.400 1.00 23.98 C
ATOM 10 O3' U B 125 -1.923 -6.317 31.314 1.00 27.26 O
ATOM 11 C2' U B 125 -2.249 -8.081 29.644 1.00 27.28 C
ATOM 12 O2' U B 125 -1.473 -8.905 30.500 1.00 29.81 O
ATOM 13 C1' U B 125 -3.509 -8.856 29.273 1.00 24.56 C
ATOM 14 N1 U B 125 -3.937 -8.543 27.907 1.00 25.27 N
ATOM 15 C2 U B 125 -3.256 -9.215 26.920 1.00 24.50 C
ATOM 16 O2 U B 125 -2.366 -10.005 27.175 1.00 25.30 O
ATOM 17 N3 U B 125 -3.653 -8.923 25.648 1.00 23.28 N
ATOM 18 C4 U B 125 -4.650 -8.035 25.290 1.00 24.22 C
ATOM 19 O4 U B 125 -4.902 -7.878 24.101 1.00 25.39 O
ATOM 20 C5 U B 125 -5.317 -7.377 26.379 1.00 25.18 C
ATOM 21 C6 U B 125 -4.937 -7.641 27.638 1.00 22.80 C
ATOM 22 P G B 126 -1.620 -4.745 31.240 1.00 32.46 P
ATOM 23 OP1 G B 126 -1.069 -4.502 32.593 1.00 36.68 O
ATOM 24 OP2 G B 126 -2.826 -4.003 30.786 1.00 30.17 O
ATOM 25 O5' G B 126 -0.530 -4.591 30.084 1.00 33.50 O
TER
Atoms:
OP1: (-11.019,-3.941,27.020)
OP2: (-10.105,-5.330,25.064)
C3': (-8.308,-7.237,29.588)
C1': (-8.491,-9.556,29.236)
C5': (-10.653,-6.654,28.618)
O4': (-9.672,-8.924,28.748)
C8: (-6.517,-10.967,28.378)
O2': (-8.132,-8.847,31.419)
C6: (-6.596,-10.638,24.980)
C5: (-6.678,-10.675,26.353)
C4: (-7.708,-9.928,26.901)
P: (-10.786,-5.262,26.384)
C4': (-9.769,-7.617,29.391)
C2': (-7.734,-8.557,30.093)
C2: (-8.459,-9.223,25.069)
N1: (-7.524,-9.876,24.389)
N3: (-8.656,-9.175,26.360)
N6: (-5.683,-11.274,24.242)
N7: (-5.903,-11.344,27.293)
N9: (-7.611,-10.123,28.203)
O5': (-10.064,-6.259,27.391)
O3': (-8.095,-6.173,30.496)
OP2: (-10.105,-5.330,25.064)
C3': (-8.308,-7.237,29.588)
C1': (-8.491,-9.556,29.236)
C5': (-10.653,-6.654,28.618)
O4': (-9.672,-8.924,28.748)
C8: (-6.517,-10.967,28.378)
O2': (-8.132,-8.847,31.419)
C6: (-6.596,-10.638,24.980)
C5: (-6.678,-10.675,26.353)
C4: (-7.708,-9.928,26.901)
P: (-10.786,-5.262,26.384)
C4': (-9.769,-7.617,29.391)
C2': (-7.734,-8.557,30.093)
C2: (-8.459,-9.223,25.069)
N1: (-7.524,-9.876,24.389)
N3: (-8.656,-9.175,26.360)
N6: (-5.683,-11.274,24.242)
N7: (-5.903,-11.344,27.293)
N9: (-7.611,-10.123,28.203)
O5': (-10.064,-6.259,27.391)
O3': (-8.095,-6.173,30.496)
C4: (-4.650,-8.035,25.290)
N3: (-3.653,-8.923,25.648)
OP1: (-7.064,-4.294,31.550)
OP2: (-7.161,-4.418,28.963)
C2: (-3.256,-9.215,26.920)
C1': (-3.509,-8.856,29.273)
C3': (-2.829,-6.899,30.400)
O5': (-5.579,-5.858,30.288)
O4': (-4.530,-8.490,30.170)
C5': (-5.138,-6.541,31.451)
P: (-6.951,-5.066,30.278)
C4': (-4.032,-7.504,31.103)
C2': (-2.249,-8.081,29.644)
O2': (-1.473,-8.905,30.500)
N1: (-3.937,-8.543,27.907)
O4: (-4.902,-7.878,24.101)
O2: (-2.366,-10.005,27.175)
C6: (-4.937,-7.641,27.638)
C5: (-5.317,-7.377,26.379)
O3': (-1.923,-6.317,31.314)
N3: (-3.653,-8.923,25.648)
OP1: (-7.064,-4.294,31.550)
OP2: (-7.161,-4.418,28.963)
C2: (-3.256,-9.215,26.920)
C1': (-3.509,-8.856,29.273)
C3': (-2.829,-6.899,30.400)
O5': (-5.579,-5.858,30.288)
O4': (-4.530,-8.490,30.170)
C5': (-5.138,-6.541,31.451)
P: (-6.951,-5.066,30.278)
C4': (-4.032,-7.504,31.103)
C2': (-2.249,-8.081,29.644)
O2': (-1.473,-8.905,30.500)
N1: (-3.937,-8.543,27.907)
O4: (-4.902,-7.878,24.101)
O2: (-2.366,-10.005,27.175)
C6: (-4.937,-7.641,27.638)
C5: (-5.317,-7.377,26.379)
O3': (-1.923,-6.317,31.314)
Image (generated by PyMOL):