Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12490:1720
Extra
PDB:
ATOM 1 O3' C A2489 41.615 -72.808 53.590 1.00 51.49 O
ATOM 2 P A A2490 41.231 -74.089 54.491 1.00 54.65 P
ATOM 3 OP1 A A2490 41.809 -75.273 53.804 1.00 55.22 O
ATOM 4 OP2 A A2490 39.764 -74.052 54.721 1.00 54.61 O
ATOM 5 O5' A A2490 42.004 -73.800 55.862 1.00 54.42 O
ATOM 6 C5' A A2490 43.406 -73.974 55.956 1.00 54.51 C
ATOM 7 C4' A A2490 43.899 -73.796 57.369 1.00 54.34 C
ATOM 8 O4' A A2490 43.590 -72.467 57.841 1.00 53.75 O
ATOM 9 C3' A A2490 43.299 -74.713 58.417 1.00 54.63 C
ATOM 10 O3' A A2490 43.916 -75.969 58.432 1.00 55.17 O
ATOM 11 C2' A A2490 43.513 -73.938 59.704 1.00 54.23 C
ATOM 12 O2' A A2490 44.841 -74.094 60.158 1.00 54.31 O
ATOM 13 C1' A A2490 43.325 -72.500 59.230 1.00 53.67 C
ATOM 14 N9 A A2490 41.945 -72.038 59.436 1.00 53.45 N
ATOM 15 C8 A A2490 41.078 -71.784 58.422 1.00 53.40 C
ATOM 16 N7 A A2490 39.915 -71.364 58.841 1.00 53.20 N
ATOM 17 C5 A A2490 40.036 -71.355 60.216 1.00 53.11 C
ATOM 18 C6 A A2490 39.120 -71.026 61.211 1.00 52.92 C
ATOM 19 N6 A A2490 37.898 -70.622 60.930 1.00 52.78 N
ATOM 20 N1 A A2490 39.498 -71.120 62.488 1.00 52.90 N
ATOM 21 C2 A A2490 40.750 -71.509 62.709 1.00 53.06 C
ATOM 22 N3 A A2490 41.713 -71.848 61.852 1.00 53.24 N
ATOM 23 C4 A A2490 41.279 -71.759 60.598 1.00 53.26 C
ATOM 24 P A A2491 43.046 -77.313 58.565 1.00 57.83 P
ATOM 25 OP1 A A2491 43.989 -78.425 58.336 1.00 58.35 O
ATOM 26 OP2 A A2491 41.857 -77.179 57.660 1.00 57.81 O
ATOM 27 O5' A A2491 42.585 -77.291 60.089 1.00 57.71 O
TER
ATOM 1 O3' A B 719 49.054 -74.166 63.767 1.00 70.80 O
ATOM 2 P U B 720 49.891 -73.315 62.677 1.00 75.05 P
ATOM 3 OP1 U B 720 49.453 -73.794 61.348 1.00 75.28 O
ATOM 4 OP2 U B 720 51.328 -73.398 63.030 1.00 75.16 O
ATOM 5 O5' U B 720 49.376 -71.819 62.917 1.00 74.41 O
ATOM 6 C5' U B 720 48.051 -71.423 62.578 1.00 74.20 C
ATOM 7 C4' U B 720 48.025 -70.101 61.822 1.00 73.71 C
ATOM 8 O4' U B 720 46.804 -70.032 61.071 1.00 73.67 O
ATOM 9 C3' U B 720 48.008 -68.831 62.669 1.00 73.19 C
ATOM 10 O3' U B 720 49.298 -68.377 63.044 1.00 73.07 O
ATOM 11 C2' U B 720 47.263 -67.825 61.805 1.00 72.81 C
ATOM 12 O2' U B 720 48.155 -67.146 60.926 1.00 72.64 O
ATOM 13 C1' U B 720 46.345 -68.711 60.982 1.00 73.15 C
ATOM 14 N1 U B 720 44.929 -68.641 61.430 1.00 73.06 N
ATOM 15 C2 U B 720 43.990 -68.543 60.404 1.00 73.04 C
ATOM 16 O2 U B 720 44.344 -68.576 59.251 1.00 73.13 O
ATOM 17 N3 U B 720 42.646 -68.441 60.665 1.00 72.96 N
ATOM 18 C4 U B 720 42.136 -68.407 61.909 1.00 72.88 C
ATOM 19 O4 U B 720 40.914 -68.309 62.040 1.00 72.83 O
ATOM 20 C5 U B 720 43.179 -68.492 62.905 1.00 72.90 C
ATOM 21 C6 U B 720 44.500 -68.587 62.709 1.00 72.97 C
ATOM 22 P U B 721 49.801 -68.538 64.566 1.00 61.45 P
ATOM 23 OP1 U B 721 50.986 -67.596 64.741 1.00 61.16 O
ATOM 24 OP2 U B 721 49.988 -70.006 64.804 1.00 62.02 O
ATOM 25 O5' U B 721 48.557 -68.014 65.430 1.00 61.18 O
TER
ATOM 2 P A A2490 41.231 -74.089 54.491 1.00 54.65 P
ATOM 3 OP1 A A2490 41.809 -75.273 53.804 1.00 55.22 O
ATOM 4 OP2 A A2490 39.764 -74.052 54.721 1.00 54.61 O
ATOM 5 O5' A A2490 42.004 -73.800 55.862 1.00 54.42 O
ATOM 6 C5' A A2490 43.406 -73.974 55.956 1.00 54.51 C
ATOM 7 C4' A A2490 43.899 -73.796 57.369 1.00 54.34 C
ATOM 8 O4' A A2490 43.590 -72.467 57.841 1.00 53.75 O
ATOM 9 C3' A A2490 43.299 -74.713 58.417 1.00 54.63 C
ATOM 10 O3' A A2490 43.916 -75.969 58.432 1.00 55.17 O
ATOM 11 C2' A A2490 43.513 -73.938 59.704 1.00 54.23 C
ATOM 12 O2' A A2490 44.841 -74.094 60.158 1.00 54.31 O
ATOM 13 C1' A A2490 43.325 -72.500 59.230 1.00 53.67 C
ATOM 14 N9 A A2490 41.945 -72.038 59.436 1.00 53.45 N
ATOM 15 C8 A A2490 41.078 -71.784 58.422 1.00 53.40 C
ATOM 16 N7 A A2490 39.915 -71.364 58.841 1.00 53.20 N
ATOM 17 C5 A A2490 40.036 -71.355 60.216 1.00 53.11 C
ATOM 18 C6 A A2490 39.120 -71.026 61.211 1.00 52.92 C
ATOM 19 N6 A A2490 37.898 -70.622 60.930 1.00 52.78 N
ATOM 20 N1 A A2490 39.498 -71.120 62.488 1.00 52.90 N
ATOM 21 C2 A A2490 40.750 -71.509 62.709 1.00 53.06 C
ATOM 22 N3 A A2490 41.713 -71.848 61.852 1.00 53.24 N
ATOM 23 C4 A A2490 41.279 -71.759 60.598 1.00 53.26 C
ATOM 24 P A A2491 43.046 -77.313 58.565 1.00 57.83 P
ATOM 25 OP1 A A2491 43.989 -78.425 58.336 1.00 58.35 O
ATOM 26 OP2 A A2491 41.857 -77.179 57.660 1.00 57.81 O
ATOM 27 O5' A A2491 42.585 -77.291 60.089 1.00 57.71 O
TER
ATOM 1 O3' A B 719 49.054 -74.166 63.767 1.00 70.80 O
ATOM 2 P U B 720 49.891 -73.315 62.677 1.00 75.05 P
ATOM 3 OP1 U B 720 49.453 -73.794 61.348 1.00 75.28 O
ATOM 4 OP2 U B 720 51.328 -73.398 63.030 1.00 75.16 O
ATOM 5 O5' U B 720 49.376 -71.819 62.917 1.00 74.41 O
ATOM 6 C5' U B 720 48.051 -71.423 62.578 1.00 74.20 C
ATOM 7 C4' U B 720 48.025 -70.101 61.822 1.00 73.71 C
ATOM 8 O4' U B 720 46.804 -70.032 61.071 1.00 73.67 O
ATOM 9 C3' U B 720 48.008 -68.831 62.669 1.00 73.19 C
ATOM 10 O3' U B 720 49.298 -68.377 63.044 1.00 73.07 O
ATOM 11 C2' U B 720 47.263 -67.825 61.805 1.00 72.81 C
ATOM 12 O2' U B 720 48.155 -67.146 60.926 1.00 72.64 O
ATOM 13 C1' U B 720 46.345 -68.711 60.982 1.00 73.15 C
ATOM 14 N1 U B 720 44.929 -68.641 61.430 1.00 73.06 N
ATOM 15 C2 U B 720 43.990 -68.543 60.404 1.00 73.04 C
ATOM 16 O2 U B 720 44.344 -68.576 59.251 1.00 73.13 O
ATOM 17 N3 U B 720 42.646 -68.441 60.665 1.00 72.96 N
ATOM 18 C4 U B 720 42.136 -68.407 61.909 1.00 72.88 C
ATOM 19 O4 U B 720 40.914 -68.309 62.040 1.00 72.83 O
ATOM 20 C5 U B 720 43.179 -68.492 62.905 1.00 72.90 C
ATOM 21 C6 U B 720 44.500 -68.587 62.709 1.00 72.97 C
ATOM 22 P U B 721 49.801 -68.538 64.566 1.00 61.45 P
ATOM 23 OP1 U B 721 50.986 -67.596 64.741 1.00 61.16 O
ATOM 24 OP2 U B 721 49.988 -70.006 64.804 1.00 62.02 O
ATOM 25 O5' U B 721 48.557 -68.014 65.430 1.00 61.18 O
TER
Atoms:
OP1: (41.809,-75.273,53.804)
OP2: (39.764,-74.052,54.721)
C3': (43.299,-74.713,58.417)
C1': (43.325,-72.500,59.230)
C5': (43.406,-73.974,55.956)
O4': (43.590,-72.467,57.841)
C8: (41.078,-71.784,58.422)
O2': (44.841,-74.094,60.158)
C6: (39.120,-71.026,61.211)
C5: (40.036,-71.355,60.216)
C4: (41.279,-71.759,60.598)
P: (41.231,-74.089,54.491)
C4': (43.899,-73.796,57.369)
C2': (43.513,-73.938,59.704)
C2: (40.750,-71.509,62.709)
N1: (39.498,-71.120,62.488)
N3: (41.713,-71.848,61.852)
N6: (37.898,-70.622,60.930)
N7: (39.915,-71.364,58.841)
N9: (41.945,-72.038,59.436)
O5': (42.004,-73.800,55.862)
O3': (43.916,-75.969,58.432)
OP2: (39.764,-74.052,54.721)
C3': (43.299,-74.713,58.417)
C1': (43.325,-72.500,59.230)
C5': (43.406,-73.974,55.956)
O4': (43.590,-72.467,57.841)
C8: (41.078,-71.784,58.422)
O2': (44.841,-74.094,60.158)
C6: (39.120,-71.026,61.211)
C5: (40.036,-71.355,60.216)
C4: (41.279,-71.759,60.598)
P: (41.231,-74.089,54.491)
C4': (43.899,-73.796,57.369)
C2': (43.513,-73.938,59.704)
C2: (40.750,-71.509,62.709)
N1: (39.498,-71.120,62.488)
N3: (41.713,-71.848,61.852)
N6: (37.898,-70.622,60.930)
N7: (39.915,-71.364,58.841)
N9: (41.945,-72.038,59.436)
O5': (42.004,-73.800,55.862)
O3': (43.916,-75.969,58.432)
C4: (42.136,-68.407,61.909)
N3: (42.646,-68.441,60.665)
OP1: (49.453,-73.794,61.348)
OP2: (51.328,-73.398,63.030)
C2: (43.990,-68.543,60.404)
C1': (46.345,-68.711,60.982)
C3': (48.008,-68.831,62.669)
O5': (49.376,-71.819,62.917)
O4': (46.804,-70.032,61.071)
C5': (48.051,-71.423,62.578)
P: (49.891,-73.315,62.677)
C4': (48.025,-70.101,61.822)
C2': (47.263,-67.825,61.805)
O2': (48.155,-67.146,60.926)
N1: (44.929,-68.641,61.430)
O4: (40.914,-68.309,62.040)
O2: (44.344,-68.576,59.251)
C6: (44.500,-68.587,62.709)
C5: (43.179,-68.492,62.905)
O3': (49.298,-68.377,63.044)
N3: (42.646,-68.441,60.665)
OP1: (49.453,-73.794,61.348)
OP2: (51.328,-73.398,63.030)
C2: (43.990,-68.543,60.404)
C1': (46.345,-68.711,60.982)
C3': (48.008,-68.831,62.669)
O5': (49.376,-71.819,62.917)
O4': (46.804,-70.032,61.071)
C5': (48.051,-71.423,62.578)
P: (49.891,-73.315,62.677)
C4': (48.025,-70.101,61.822)
C2': (47.263,-67.825,61.805)
O2': (48.155,-67.146,60.926)
N1: (44.929,-68.641,61.430)
O4: (40.914,-68.309,62.040)
O2: (44.344,-68.576,59.251)
C6: (44.500,-68.587,62.709)
C5: (43.179,-68.492,62.905)
O3': (49.298,-68.377,63.044)
Image (generated by PyMOL):