Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDH:S12:S1
Extra
PDB:
ATOM 1 O3' C A 11 -4.747 91.090 -0.347 0.60 77.32 O
ATOM 2 P A A 12 -3.398 90.210 -0.292 0.60 79.98 P
ATOM 3 OP1 A A 12 -3.857 88.772 -0.475 0.60 80.34 O
ATOM 4 OP2 A A 12 -2.563 90.587 0.923 0.60 80.60 O
ATOM 5 O5' A A 12 -2.585 90.675 -1.585 0.60 78.11 O
ATOM 6 C5' A A 12 -2.992 90.228 -2.895 0.60 75.89 C
ATOM 7 C4' A A 12 -2.095 90.852 -3.924 0.60 73.96 C
ATOM 8 O4' A A 12 -2.218 92.301 -3.798 0.60 72.16 O
ATOM 9 C3' A A 12 -0.608 90.574 -3.683 0.60 73.34 C
ATOM 10 O3' A A 12 -0.163 89.201 -3.869 0.60 72.62 O
ATOM 11 C2' A A 12 0.079 91.804 -4.284 0.60 71.96 C
ATOM 12 O2' A A 12 0.246 91.764 -5.697 0.60 72.72 O
ATOM 13 C1' A A 12 -0.939 92.902 -3.949 0.60 69.78 C
ATOM 14 N9 A A 12 -0.611 93.585 -2.707 0.60 65.33 N
ATOM 15 C8 A A 12 -1.147 93.402 -1.451 0.60 63.92 C
ATOM 16 N7 A A 12 -0.599 94.162 -0.537 0.60 61.98 N
ATOM 17 C5 A A 12 0.348 94.897 -1.239 0.60 61.89 C
ATOM 18 C6 A A 12 1.255 95.878 -0.839 0.60 61.60 C
ATOM 19 N6 A A 12 1.362 96.312 0.427 0.60 61.79 N
ATOM 20 N1 A A 12 2.065 96.411 -1.793 0.60 60.65 N
ATOM 21 C2 A A 12 1.949 95.970 -3.063 0.60 60.30 C
ATOM 22 N3 A A 12 1.125 95.050 -3.556 0.60 60.59 N
ATOM 23 C4 A A 12 0.345 94.555 -2.578 0.60 62.01 C
TER
ATOM 1 P G B 1 6.108 104.333 -4.820 0.60 58.24 P
ATOM 2 OP1 G B 1 6.758 105.279 -5.828 0.60 55.83 O
ATOM 3 OP2 G B 1 5.574 104.909 -3.540 0.60 56.55 O
ATOM 4 O5' G B 1 4.848 103.595 -5.505 0.60 57.65 O
ATOM 5 C5' G B 1 5.019 102.690 -6.639 0.60 57.75 C
ATOM 6 C4' G B 1 3.757 101.861 -6.885 0.60 56.33 C
ATOM 7 O4' G B 1 3.688 100.669 -6.039 0.60 56.60 O
ATOM 8 C3' G B 1 2.403 102.539 -6.693 0.60 56.12 C
ATOM 9 O3' G B 1 2.054 103.390 -7.805 0.60 53.32 O
ATOM 10 C2' G B 1 1.448 101.335 -6.580 0.60 54.82 C
ATOM 11 O2' G B 1 1.035 100.832 -7.840 0.60 56.74 O
ATOM 12 C1' G B 1 2.324 100.268 -5.883 0.60 54.68 C
ATOM 13 N9 G B 1 2.000 100.131 -4.459 0.60 52.38 N
ATOM 14 C8 G B 1 2.491 100.923 -3.441 0.60 51.10 C
ATOM 15 N7 G B 1 1.951 100.664 -2.273 0.60 50.09 N
ATOM 16 C5 G B 1 1.063 99.621 -2.516 0.60 48.68 C
ATOM 17 C6 G B 1 0.171 98.959 -1.622 0.60 46.49 C
ATOM 18 O6 G B 1 -0.027 99.188 -0.428 0.60 45.18 O
ATOM 19 N1 G B 1 -0.541 97.948 -2.260 0.60 44.61 N
ATOM 20 C2 G B 1 -0.423 97.616 -3.595 0.60 45.77 C
ATOM 21 N2 G B 1 -1.195 96.590 -4.014 0.60 44.68 N
ATOM 22 N3 G B 1 0.393 98.248 -4.459 0.60 46.77 N
ATOM 23 C4 G B 1 1.100 99.237 -3.854 0.60 49.36 C
ATOM 24 P A B 2 2.091 105.017 -7.647 0.60 49.55 P
ATOM 25 OP1 A B 2 3.402 105.471 -8.250 0.60 49.38 O
ATOM 26 OP2 A B 2 1.776 105.420 -6.225 0.60 50.60 O
ATOM 27 O5' A B 2 0.892 105.537 -8.577 0.60 48.86 O
TER
ATOM 2 P A A 12 -3.398 90.210 -0.292 0.60 79.98 P
ATOM 3 OP1 A A 12 -3.857 88.772 -0.475 0.60 80.34 O
ATOM 4 OP2 A A 12 -2.563 90.587 0.923 0.60 80.60 O
ATOM 5 O5' A A 12 -2.585 90.675 -1.585 0.60 78.11 O
ATOM 6 C5' A A 12 -2.992 90.228 -2.895 0.60 75.89 C
ATOM 7 C4' A A 12 -2.095 90.852 -3.924 0.60 73.96 C
ATOM 8 O4' A A 12 -2.218 92.301 -3.798 0.60 72.16 O
ATOM 9 C3' A A 12 -0.608 90.574 -3.683 0.60 73.34 C
ATOM 10 O3' A A 12 -0.163 89.201 -3.869 0.60 72.62 O
ATOM 11 C2' A A 12 0.079 91.804 -4.284 0.60 71.96 C
ATOM 12 O2' A A 12 0.246 91.764 -5.697 0.60 72.72 O
ATOM 13 C1' A A 12 -0.939 92.902 -3.949 0.60 69.78 C
ATOM 14 N9 A A 12 -0.611 93.585 -2.707 0.60 65.33 N
ATOM 15 C8 A A 12 -1.147 93.402 -1.451 0.60 63.92 C
ATOM 16 N7 A A 12 -0.599 94.162 -0.537 0.60 61.98 N
ATOM 17 C5 A A 12 0.348 94.897 -1.239 0.60 61.89 C
ATOM 18 C6 A A 12 1.255 95.878 -0.839 0.60 61.60 C
ATOM 19 N6 A A 12 1.362 96.312 0.427 0.60 61.79 N
ATOM 20 N1 A A 12 2.065 96.411 -1.793 0.60 60.65 N
ATOM 21 C2 A A 12 1.949 95.970 -3.063 0.60 60.30 C
ATOM 22 N3 A A 12 1.125 95.050 -3.556 0.60 60.59 N
ATOM 23 C4 A A 12 0.345 94.555 -2.578 0.60 62.01 C
TER
ATOM 1 P G B 1 6.108 104.333 -4.820 0.60 58.24 P
ATOM 2 OP1 G B 1 6.758 105.279 -5.828 0.60 55.83 O
ATOM 3 OP2 G B 1 5.574 104.909 -3.540 0.60 56.55 O
ATOM 4 O5' G B 1 4.848 103.595 -5.505 0.60 57.65 O
ATOM 5 C5' G B 1 5.019 102.690 -6.639 0.60 57.75 C
ATOM 6 C4' G B 1 3.757 101.861 -6.885 0.60 56.33 C
ATOM 7 O4' G B 1 3.688 100.669 -6.039 0.60 56.60 O
ATOM 8 C3' G B 1 2.403 102.539 -6.693 0.60 56.12 C
ATOM 9 O3' G B 1 2.054 103.390 -7.805 0.60 53.32 O
ATOM 10 C2' G B 1 1.448 101.335 -6.580 0.60 54.82 C
ATOM 11 O2' G B 1 1.035 100.832 -7.840 0.60 56.74 O
ATOM 12 C1' G B 1 2.324 100.268 -5.883 0.60 54.68 C
ATOM 13 N9 G B 1 2.000 100.131 -4.459 0.60 52.38 N
ATOM 14 C8 G B 1 2.491 100.923 -3.441 0.60 51.10 C
ATOM 15 N7 G B 1 1.951 100.664 -2.273 0.60 50.09 N
ATOM 16 C5 G B 1 1.063 99.621 -2.516 0.60 48.68 C
ATOM 17 C6 G B 1 0.171 98.959 -1.622 0.60 46.49 C
ATOM 18 O6 G B 1 -0.027 99.188 -0.428 0.60 45.18 O
ATOM 19 N1 G B 1 -0.541 97.948 -2.260 0.60 44.61 N
ATOM 20 C2 G B 1 -0.423 97.616 -3.595 0.60 45.77 C
ATOM 21 N2 G B 1 -1.195 96.590 -4.014 0.60 44.68 N
ATOM 22 N3 G B 1 0.393 98.248 -4.459 0.60 46.77 N
ATOM 23 C4 G B 1 1.100 99.237 -3.854 0.60 49.36 C
ATOM 24 P A B 2 2.091 105.017 -7.647 0.60 49.55 P
ATOM 25 OP1 A B 2 3.402 105.471 -8.250 0.60 49.38 O
ATOM 26 OP2 A B 2 1.776 105.420 -6.225 0.60 50.60 O
ATOM 27 O5' A B 2 0.892 105.537 -8.577 0.60 48.86 O
TER
Atoms:
OP1: (-3.857,88.772,-0.475)
OP2: (-2.563,90.587,0.923)
C3': (-0.608,90.574,-3.683)
C1': (-0.939,92.902,-3.949)
C5': (-2.992,90.228,-2.895)
O4': (-2.218,92.301,-3.798)
C8: (-1.147,93.402,-1.451)
O2': (0.246,91.764,-5.697)
C6: (1.255,95.878,-0.839)
C5: (0.348,94.897,-1.239)
C4: (0.345,94.555,-2.578)
P: (-3.398,90.210,-0.292)
C4': (-2.095,90.852,-3.924)
C2': (0.079,91.804,-4.284)
C2: (1.949,95.970,-3.063)
N1: (2.065,96.411,-1.793)
N3: (1.125,95.050,-3.556)
N6: (1.362,96.312,0.427)
N7: (-0.599,94.162,-0.537)
N9: (-0.611,93.585,-2.707)
O5': (-2.585,90.675,-1.585)
O3': (-0.163,89.201,-3.869)
OP2: (-2.563,90.587,0.923)
C3': (-0.608,90.574,-3.683)
C1': (-0.939,92.902,-3.949)
C5': (-2.992,90.228,-2.895)
O4': (-2.218,92.301,-3.798)
C8: (-1.147,93.402,-1.451)
O2': (0.246,91.764,-5.697)
C6: (1.255,95.878,-0.839)
C5: (0.348,94.897,-1.239)
C4: (0.345,94.555,-2.578)
P: (-3.398,90.210,-0.292)
C4': (-2.095,90.852,-3.924)
C2': (0.079,91.804,-4.284)
C2: (1.949,95.970,-3.063)
N1: (2.065,96.411,-1.793)
N3: (1.125,95.050,-3.556)
N6: (1.362,96.312,0.427)
N7: (-0.599,94.162,-0.537)
N9: (-0.611,93.585,-2.707)
O5': (-2.585,90.675,-1.585)
O3': (-0.163,89.201,-3.869)
OP1: (6.758,105.279,-5.828)
OP2: (5.574,104.909,-3.540)
C3': (2.403,102.539,-6.693)
C1': (2.324,100.268,-5.883)
C5': (5.019,102.690,-6.639)
O6: (-0.027,99.188,-0.428)
O4': (3.688,100.669,-6.039)
C8: (2.491,100.923,-3.441)
C2: (-0.423,97.616,-3.595)
C6: (0.171,98.959,-1.622)
C5: (1.063,99.621,-2.516)
C4: (1.100,99.237,-3.854)
P: (6.108,104.333,-4.820)
C4': (3.757,101.861,-6.885)
C2': (1.448,101.335,-6.580)
O2': (1.035,100.832,-7.840)
N1: (-0.541,97.948,-2.260)
N2: (-1.195,96.590,-4.014)
N3: (0.393,98.248,-4.459)
N7: (1.951,100.664,-2.273)
N9: (2.000,100.131,-4.459)
O5': (4.848,103.595,-5.505)
O3': (2.054,103.390,-7.805)
OP2: (5.574,104.909,-3.540)
C3': (2.403,102.539,-6.693)
C1': (2.324,100.268,-5.883)
C5': (5.019,102.690,-6.639)
O6: (-0.027,99.188,-0.428)
O4': (3.688,100.669,-6.039)
C8: (2.491,100.923,-3.441)
C2: (-0.423,97.616,-3.595)
C6: (0.171,98.959,-1.622)
C5: (1.063,99.621,-2.516)
C4: (1.100,99.237,-3.854)
P: (6.108,104.333,-4.820)
C4': (3.757,101.861,-6.885)
C2': (1.448,101.335,-6.580)
O2': (1.035,100.832,-7.840)
N1: (-0.541,97.948,-2.260)
N2: (-1.195,96.590,-4.014)
N3: (0.393,98.248,-4.459)
N7: (1.951,100.664,-2.273)
N9: (2.000,100.131,-4.459)
O5': (4.848,103.595,-5.505)
O3': (2.054,103.390,-7.805)
Image (generated by PyMOL):