Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A2559:A2538
Extra
PDB:
ATOM 1 O3' A A2558 -52.947 89.931 158.198 1.00 0.66 O
ATOM 2 P G A2559 -53.290 91.496 158.302 1.00 0.78 P
ATOM 3 OP1 G A2559 -52.887 92.121 157.002 1.00 0.78 O
ATOM 4 OP2 G A2559 -52.650 91.967 159.588 1.00 0.78 O
ATOM 5 O5' G A2559 -54.878 91.512 158.460 1.00 0.78 O
ATOM 6 C5' G A2559 -55.465 91.015 159.655 1.00 0.78 C
ATOM 7 C4' G A2559 -56.930 91.306 159.729 1.00 0.78 C
ATOM 8 O4' G A2559 -57.517 90.567 160.828 1.00 0.78 O
ATOM 9 C3' G A2559 -57.291 92.756 159.985 1.00 0.78 C
ATOM 10 O3' G A2559 -57.362 93.482 158.787 1.00 0.78 O
ATOM 11 C2' G A2559 -58.626 92.667 160.717 1.00 0.78 C
ATOM 12 O2' G A2559 -59.717 92.547 159.802 1.00 0.78 O
ATOM 13 C1' G A2559 -58.476 91.355 161.491 1.00 0.78 C
ATOM 14 N9 G A2559 -58.019 91.556 162.884 1.00 0.56 N
ATOM 15 C8 G A2559 -56.864 91.026 163.414 1.00 0.56 C
ATOM 16 N7 G A2559 -56.681 91.304 164.676 1.00 0.56 N
ATOM 17 C5 G A2559 -57.792 92.057 165.002 1.00 0.56 C
ATOM 18 C6 G A2559 -58.138 92.636 166.238 1.00 0.56 C
ATOM 19 O6 G A2559 -57.493 92.587 167.309 1.00 0.56 O
ATOM 20 N1 G A2559 -59.343 93.328 166.130 1.00 0.56 N
ATOM 21 C2 G A2559 -60.098 93.430 164.996 1.00 0.56 C
ATOM 22 N2 G A2559 -61.234 94.124 165.071 1.00 0.56 N
ATOM 23 N3 G A2559 -59.779 92.887 163.852 1.00 0.56 N
ATOM 24 C4 G A2559 -58.624 92.222 163.922 1.00 0.56 C
ATOM 25 P U A2560 -56.522 94.823 158.578 1.00 0.02 P
ATOM 26 OP1 U A2560 -56.137 94.859 157.161 1.00 0.02 O
ATOM 27 OP2 U A2560 -55.451 94.869 159.614 1.00 0.02 O
ATOM 28 O5' U A2560 -57.620 95.923 158.863 1.00 0.02 O
TER
ATOM 1 O3' G B2537 -48.899 85.126 167.476 1.00 0.21 O
ATOM 2 P U B2538 -48.211 86.464 166.929 1.00 0.11 P
ATOM 3 OP1 U B2538 -46.766 86.165 166.777 1.00 0.11 O
ATOM 4 OP2 U B2538 -48.623 87.576 167.833 1.00 0.11 O
ATOM 5 O5' U B2538 -48.881 86.671 165.511 1.00 0.11 O
ATOM 6 C5' U B2538 -49.330 85.581 164.740 1.00 0.11 C
ATOM 7 C4' U B2538 -50.449 86.003 163.818 1.00 0.11 C
ATOM 8 O4' U B2538 -51.676 86.169 164.574 1.00 0.11 O
ATOM 9 C3' U B2538 -50.282 87.352 163.127 1.00 0.11 C
ATOM 10 O3' U B2538 -49.400 87.323 162.011 1.00 0.11 O
ATOM 11 C2' U B2538 -51.714 87.713 162.771 1.00 0.11 C
ATOM 12 O2' U B2538 -52.147 87.020 161.612 1.00 0.11 O
ATOM 13 C1' U B2538 -52.469 87.166 163.973 1.00 0.11 C
ATOM 14 N1 U B2538 -52.728 88.197 164.943 1.00 0.34 N
ATOM 15 C2 U B2538 -53.772 89.020 164.604 1.00 0.34 C
ATOM 16 O2 U B2538 -54.414 88.886 163.583 1.00 0.34 O
ATOM 17 N3 U B2538 -54.066 90.011 165.482 1.00 0.34 N
ATOM 18 C4 U B2538 -53.411 90.240 166.655 1.00 0.34 C
ATOM 19 O4 U B2538 -53.823 91.180 167.331 1.00 0.34 O
ATOM 20 C5 U B2538 -52.324 89.341 166.951 1.00 0.34 C
ATOM 21 C6 U B2538 -52.017 88.355 166.095 1.00 0.34 C
ATOM 22 P A B2539 -48.576 88.652 161.579 1.00 4.90 P
ATOM 23 OP1 A B2539 -47.462 88.823 162.545 1.00 4.90 O
ATOM 24 OP2 A B2539 -49.551 89.771 161.416 1.00 4.90 O
ATOM 25 O5' A B2539 -48.007 88.247 160.179 1.00 4.90 O
TER
ATOM 2 P G A2559 -53.290 91.496 158.302 1.00 0.78 P
ATOM 3 OP1 G A2559 -52.887 92.121 157.002 1.00 0.78 O
ATOM 4 OP2 G A2559 -52.650 91.967 159.588 1.00 0.78 O
ATOM 5 O5' G A2559 -54.878 91.512 158.460 1.00 0.78 O
ATOM 6 C5' G A2559 -55.465 91.015 159.655 1.00 0.78 C
ATOM 7 C4' G A2559 -56.930 91.306 159.729 1.00 0.78 C
ATOM 8 O4' G A2559 -57.517 90.567 160.828 1.00 0.78 O
ATOM 9 C3' G A2559 -57.291 92.756 159.985 1.00 0.78 C
ATOM 10 O3' G A2559 -57.362 93.482 158.787 1.00 0.78 O
ATOM 11 C2' G A2559 -58.626 92.667 160.717 1.00 0.78 C
ATOM 12 O2' G A2559 -59.717 92.547 159.802 1.00 0.78 O
ATOM 13 C1' G A2559 -58.476 91.355 161.491 1.00 0.78 C
ATOM 14 N9 G A2559 -58.019 91.556 162.884 1.00 0.56 N
ATOM 15 C8 G A2559 -56.864 91.026 163.414 1.00 0.56 C
ATOM 16 N7 G A2559 -56.681 91.304 164.676 1.00 0.56 N
ATOM 17 C5 G A2559 -57.792 92.057 165.002 1.00 0.56 C
ATOM 18 C6 G A2559 -58.138 92.636 166.238 1.00 0.56 C
ATOM 19 O6 G A2559 -57.493 92.587 167.309 1.00 0.56 O
ATOM 20 N1 G A2559 -59.343 93.328 166.130 1.00 0.56 N
ATOM 21 C2 G A2559 -60.098 93.430 164.996 1.00 0.56 C
ATOM 22 N2 G A2559 -61.234 94.124 165.071 1.00 0.56 N
ATOM 23 N3 G A2559 -59.779 92.887 163.852 1.00 0.56 N
ATOM 24 C4 G A2559 -58.624 92.222 163.922 1.00 0.56 C
ATOM 25 P U A2560 -56.522 94.823 158.578 1.00 0.02 P
ATOM 26 OP1 U A2560 -56.137 94.859 157.161 1.00 0.02 O
ATOM 27 OP2 U A2560 -55.451 94.869 159.614 1.00 0.02 O
ATOM 28 O5' U A2560 -57.620 95.923 158.863 1.00 0.02 O
TER
ATOM 1 O3' G B2537 -48.899 85.126 167.476 1.00 0.21 O
ATOM 2 P U B2538 -48.211 86.464 166.929 1.00 0.11 P
ATOM 3 OP1 U B2538 -46.766 86.165 166.777 1.00 0.11 O
ATOM 4 OP2 U B2538 -48.623 87.576 167.833 1.00 0.11 O
ATOM 5 O5' U B2538 -48.881 86.671 165.511 1.00 0.11 O
ATOM 6 C5' U B2538 -49.330 85.581 164.740 1.00 0.11 C
ATOM 7 C4' U B2538 -50.449 86.003 163.818 1.00 0.11 C
ATOM 8 O4' U B2538 -51.676 86.169 164.574 1.00 0.11 O
ATOM 9 C3' U B2538 -50.282 87.352 163.127 1.00 0.11 C
ATOM 10 O3' U B2538 -49.400 87.323 162.011 1.00 0.11 O
ATOM 11 C2' U B2538 -51.714 87.713 162.771 1.00 0.11 C
ATOM 12 O2' U B2538 -52.147 87.020 161.612 1.00 0.11 O
ATOM 13 C1' U B2538 -52.469 87.166 163.973 1.00 0.11 C
ATOM 14 N1 U B2538 -52.728 88.197 164.943 1.00 0.34 N
ATOM 15 C2 U B2538 -53.772 89.020 164.604 1.00 0.34 C
ATOM 16 O2 U B2538 -54.414 88.886 163.583 1.00 0.34 O
ATOM 17 N3 U B2538 -54.066 90.011 165.482 1.00 0.34 N
ATOM 18 C4 U B2538 -53.411 90.240 166.655 1.00 0.34 C
ATOM 19 O4 U B2538 -53.823 91.180 167.331 1.00 0.34 O
ATOM 20 C5 U B2538 -52.324 89.341 166.951 1.00 0.34 C
ATOM 21 C6 U B2538 -52.017 88.355 166.095 1.00 0.34 C
ATOM 22 P A B2539 -48.576 88.652 161.579 1.00 4.90 P
ATOM 23 OP1 A B2539 -47.462 88.823 162.545 1.00 4.90 O
ATOM 24 OP2 A B2539 -49.551 89.771 161.416 1.00 4.90 O
ATOM 25 O5' A B2539 -48.007 88.247 160.179 1.00 4.90 O
TER
Atoms:
OP1: (-52.887,92.121,157.002)
OP2: (-52.650,91.967,159.588)
C3': (-57.291,92.756,159.985)
C1': (-58.476,91.355,161.491)
C5': (-55.465,91.015,159.655)
O6: (-57.493,92.587,167.309)
O4': (-57.517,90.567,160.828)
C8: (-56.864,91.026,163.414)
C2: (-60.098,93.430,164.996)
C6: (-58.138,92.636,166.238)
C5: (-57.792,92.057,165.002)
C4: (-58.624,92.222,163.922)
P: (-53.290,91.496,158.302)
C4': (-56.930,91.306,159.729)
C2': (-58.626,92.667,160.717)
O2': (-59.717,92.547,159.802)
N1: (-59.343,93.328,166.130)
N2: (-61.234,94.124,165.071)
N3: (-59.779,92.887,163.852)
N7: (-56.681,91.304,164.676)
N9: (-58.019,91.556,162.884)
O5': (-54.878,91.512,158.460)
O3': (-57.362,93.482,158.787)
OP2: (-52.650,91.967,159.588)
C3': (-57.291,92.756,159.985)
C1': (-58.476,91.355,161.491)
C5': (-55.465,91.015,159.655)
O6: (-57.493,92.587,167.309)
O4': (-57.517,90.567,160.828)
C8: (-56.864,91.026,163.414)
C2: (-60.098,93.430,164.996)
C6: (-58.138,92.636,166.238)
C5: (-57.792,92.057,165.002)
C4: (-58.624,92.222,163.922)
P: (-53.290,91.496,158.302)
C4': (-56.930,91.306,159.729)
C2': (-58.626,92.667,160.717)
O2': (-59.717,92.547,159.802)
N1: (-59.343,93.328,166.130)
N2: (-61.234,94.124,165.071)
N3: (-59.779,92.887,163.852)
N7: (-56.681,91.304,164.676)
N9: (-58.019,91.556,162.884)
O5': (-54.878,91.512,158.460)
O3': (-57.362,93.482,158.787)
C4: (-53.411,90.240,166.655)
N3: (-54.066,90.011,165.482)
OP1: (-46.766,86.165,166.777)
OP2: (-48.623,87.576,167.833)
C2: (-53.772,89.020,164.604)
C1': (-52.469,87.166,163.973)
C3': (-50.282,87.352,163.127)
O5': (-48.881,86.671,165.511)
O4': (-51.676,86.169,164.574)
C5': (-49.330,85.581,164.740)
P: (-48.211,86.464,166.929)
C4': (-50.449,86.003,163.818)
C2': (-51.714,87.713,162.771)
O2': (-52.147,87.020,161.612)
N1: (-52.728,88.197,164.943)
O4: (-53.823,91.180,167.331)
O2: (-54.414,88.886,163.583)
C6: (-52.017,88.355,166.095)
C5: (-52.324,89.341,166.951)
O3': (-49.400,87.323,162.011)
N3: (-54.066,90.011,165.482)
OP1: (-46.766,86.165,166.777)
OP2: (-48.623,87.576,167.833)
C2: (-53.772,89.020,164.604)
C1': (-52.469,87.166,163.973)
C3': (-50.282,87.352,163.127)
O5': (-48.881,86.671,165.511)
O4': (-51.676,86.169,164.574)
C5': (-49.330,85.581,164.740)
P: (-48.211,86.464,166.929)
C4': (-50.449,86.003,163.818)
C2': (-51.714,87.713,162.771)
O2': (-52.147,87.020,161.612)
N1: (-52.728,88.197,164.943)
O4: (-53.823,91.180,167.331)
O2: (-54.414,88.886,163.583)
C6: (-52.017,88.355,166.095)
C5: (-52.324,89.341,166.951)
O3': (-49.400,87.323,162.011)
Image (generated by PyMOL):