ClaRNA

Doublet info:

Details

Nucleotide types: GU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:12557:12365

Extra

PDB:
ATOM 1 O3' A A2556 17.466 -23.833 78.685 1.00 32.62 O
ATOM 2 P G A2557 17.498 -22.627 77.648 1.00 34.02 P
ATOM 3 OP1 G A2557 16.733 -23.085 76.494 1.00 34.08 O
ATOM 4 OP2 G A2557 18.913 -22.209 77.429 1.00 33.84 O
ATOM 5 O5' G A2557 16.717 -21.495 78.412 1.00 34.06 O
ATOM 6 C5' G A2557 17.016 -20.133 78.206 1.00 33.94 C
ATOM 7 C4' G A2557 16.276 -19.311 79.198 1.00 34.03 C
ATOM 8 O4' G A2557 16.696 -19.673 80.535 1.00 34.09 O
ATOM 9 C3' G A2557 16.492 -17.822 79.158 1.00 33.93 C
ATOM 10 O3' G A2557 15.827 -17.204 78.109 1.00 33.91 O
ATOM 11 C2' G A2557 15.962 -17.408 80.511 1.00 34.06 C
ATOM 12 O2' G A2557 14.551 -17.438 80.510 1.00 34.22 O
ATOM 13 C1' G A2557 16.461 -18.564 81.391 1.00 34.13 C
ATOM 14 N9 G A2557 17.701 -18.238 82.132 1.00 34.05 N
ATOM 15 C8 G A2557 18.865 -18.908 81.970 1.00 33.95 C
ATOM 16 N7 G A2557 19.837 -18.502 82.704 1.00 33.91 N
ATOM 17 C5 G A2557 19.262 -17.472 83.437 1.00 33.98 C
ATOM 18 C6 G A2557 19.839 -16.619 84.447 1.00 34.00 C
ATOM 19 O6 G A2557 20.975 -16.610 84.908 1.00 33.95 O
ATOM 20 N1 G A2557 18.955 -15.657 84.906 1.00 34.09 N
ATOM 21 C2 G A2557 17.678 -15.533 84.489 1.00 34.17 C
ATOM 22 N2 G A2557 17.040 -14.540 85.110 1.00 34.27 N
ATOM 23 N3 G A2557 17.118 -16.335 83.579 1.00 34.16 N
ATOM 24 C4 G A2557 17.940 -17.291 83.092 1.00 34.07 C
ATOM 25 P U A2558 16.560 -16.102 77.231 1.00 37.39 P
ATOM 26 OP1 U A2558 15.828 -15.978 75.964 1.00 37.41 O
ATOM 27 OP2 U A2558 17.997 -16.448 77.177 1.00 37.25 O
ATOM 28 O5' U A2558 16.377 -14.791 78.090 1.00 37.42 O
TER

ATOM 1 O3' U B2364 27.642 -24.491 80.611 1.00 37.90 O
ATOM 2 P U B2365 27.459 -23.461 79.402 1.00 36.73 P
ATOM 3 OP1 U B2365 28.183 -24.024 78.257 1.00 36.67 O
ATOM 4 OP2 U B2365 27.829 -22.122 79.911 1.00 36.65 O
ATOM 5 O5' U B2365 25.912 -23.490 79.102 1.00 36.80 O
ATOM 6 C5' U B2365 25.315 -24.558 78.417 1.00 36.89 C
ATOM 7 C4' U B2365 23.855 -24.410 78.481 1.00 36.98 C
ATOM 8 O4' U B2365 23.511 -24.021 79.824 1.00 37.06 O
ATOM 9 C3' U B2365 23.262 -23.297 77.594 1.00 36.87 C
ATOM 10 O3' U B2365 22.970 -23.750 76.292 1.00 36.86 O
ATOM 11 C2' U B2365 22.007 -22.881 78.343 1.00 36.98 C
ATOM 12 O2' U B2365 20.943 -23.731 77.997 1.00 37.11 O
ATOM 13 C1' U B2365 22.386 -23.157 79.803 1.00 37.07 C
ATOM 14 N1 U B2365 22.710 -21.937 80.539 1.00 37.01 N
ATOM 15 C2 U B2365 21.676 -21.184 80.988 1.00 37.07 C
ATOM 16 O2 U B2365 20.551 -21.464 80.767 1.00 37.16 O
ATOM 17 N3 U B2365 22.000 -20.104 81.740 1.00 37.04 N
ATOM 18 C4 U B2365 23.288 -19.695 82.081 1.00 36.95 C
ATOM 19 O4 U B2365 23.484 -18.668 82.726 1.00 36.94 O
ATOM 20 C5 U B2365 24.305 -20.562 81.602 1.00 36.89 C
ATOM 21 C6 U B2365 23.986 -21.642 80.879 1.00 36.92 C
ATOM 22 P G B2366 23.645 -23.075 74.989 1.00 51.21 P
ATOM 23 OP1 G B2366 24.580 -22.015 75.436 1.00 51.08 O
ATOM 24 OP2 G B2366 22.520 -22.713 74.060 1.00 51.23 O
ATOM 25 O5' G B2366 24.455 -24.292 74.391 1.00 51.23 O
TER

Atoms:
OP1: (16.733,-23.085,76.494)
OP2: (18.913,-22.209,77.429)
C3': (16.492,-17.822,79.158)
C1': (16.461,-18.564,81.391)
C5': (17.016,-20.133,78.206)
O6: (20.975,-16.610,84.908)
O4': (16.696,-19.673,80.535)
C8: (18.865,-18.908,81.970)
C2: (17.678,-15.533,84.489)
C6: (19.839,-16.619,84.447)
C5: (19.262,-17.472,83.437)
C4: (17.940,-17.291,83.092)
P: (17.498,-22.627,77.648)
C4': (16.276,-19.311,79.198)
C2': (15.962,-17.408,80.511)
O2': (14.551,-17.438,80.510)
N1: (18.955,-15.657,84.906)
N2: (17.040,-14.540,85.110)
N3: (17.118,-16.335,83.579)
N7: (19.837,-18.502,82.704)
N9: (17.701,-18.238,82.132)
O5': (16.717,-21.495,78.412)
O3': (15.827,-17.204,78.109)
C4: (23.288,-19.695,82.081)
N3: (22.000,-20.104,81.740)
OP1: (28.183,-24.024,78.257)
OP2: (27.829,-22.122,79.911)
C2: (21.676,-21.184,80.988)
C1': (22.386,-23.157,79.803)
C3': (23.262,-23.297,77.594)
O5': (25.912,-23.490,79.102)
O4': (23.511,-24.021,79.824)
C5': (25.315,-24.558,78.417)
P: (27.459,-23.461,79.402)
C4': (23.855,-24.410,78.481)
C2': (22.007,-22.881,78.343)
O2': (20.943,-23.731,77.997)
N1: (22.710,-21.937,80.539)
O4: (23.484,-18.668,82.726)
O2: (20.551,-21.464,80.767)
C6: (23.986,-21.642,80.879)
C5: (24.305,-20.562,81.602)
O3': (22.970,-23.750,76.292)
Image (generated by PyMOL):
PyMOL image
show in jmol