Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:060:046
Extra
PDB:
ATOM 1 O3' A A 59 53.594 161.310 31.251 1.00 49.76 O
ATOM 2 P A A 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 3 OP1 A A 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 4 OP2 A A 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 5 O5' A A 60 51.494 160.349 32.278 1.00 49.83 O
ATOM 6 C5' A A 60 50.093 160.577 32.507 1.00 52.25 C
ATOM 7 C4' A A 60 49.332 159.273 32.457 1.00 54.08 C
ATOM 8 O4' A A 60 49.860 158.365 33.456 1.00 53.75 O
ATOM 9 C3' A A 60 47.847 159.397 32.756 1.00 57.22 C
ATOM 10 O3' A A 60 47.140 158.388 32.061 1.00 60.87 O
ATOM 11 C2' A A 60 47.780 159.125 34.249 1.00 57.20 C
ATOM 12 O2' A A 60 46.516 158.623 34.637 1.00 60.57 O
ATOM 13 C1' A A 60 48.863 158.064 34.410 1.00 55.25 C
ATOM 14 N9 A A 60 49.499 158.082 35.723 1.00 55.61 N
ATOM 15 C8 A A 60 49.594 157.051 36.617 1.00 56.98 C
ATOM 16 N7 A A 60 50.278 157.347 37.695 1.00 58.44 N
ATOM 17 C5 A A 60 50.649 158.670 37.503 1.00 58.17 C
ATOM 18 C6 A A 60 51.399 159.567 38.284 1.00 57.81 C
ATOM 19 N6 A A 60 51.948 159.250 39.460 1.00 57.81 N
ATOM 20 N1 A A 60 51.572 160.819 37.808 1.00 57.22 N
ATOM 21 C2 A A 60 51.031 161.134 36.629 1.00 57.00 C
ATOM 22 N3 A A 60 50.313 160.380 35.802 1.00 57.67 N
ATOM 23 C4 A A 60 50.159 159.142 36.302 1.00 57.35 C
ATOM 24 P G A 61 46.650 158.659 30.560 1.00 64.19 P
ATOM 25 OP1 G A 61 46.149 160.065 30.472 1.00 63.24 O
ATOM 26 OP2 G A 61 45.758 157.527 30.173 1.00 64.36 O
ATOM 27 O5' G A 61 47.999 158.556 29.724 1.00 60.75 O
TER
ATOM 1 O3' U B 45 55.390 165.561 35.996 1.00 54.38 O
ATOM 2 P G B 46 54.487 166.563 36.865 1.00 55.00 P
ATOM 3 OP1 G B 46 54.244 167.767 36.040 1.00 55.70 O
ATOM 4 OP2 G B 46 55.102 166.707 38.201 1.00 56.35 O
ATOM 5 O5' G B 46 53.104 165.794 37.005 1.00 54.35 O
ATOM 6 C5' G B 46 52.425 165.333 35.839 1.00 53.60 C
ATOM 7 C4' G B 46 50.942 165.385 36.050 1.00 54.27 C
ATOM 8 O4' G B 46 50.546 164.300 36.925 1.00 54.94 O
ATOM 9 C3' G B 46 50.389 166.661 36.675 1.00 54.61 C
ATOM 10 O3' G B 46 49.130 166.945 36.076 1.00 57.10 O
ATOM 11 C2' G B 46 50.173 166.254 38.129 1.00 53.33 C
ATOM 12 O2' G B 46 49.151 166.996 38.755 1.00 52.20 O
ATOM 13 C1' G B 46 49.725 164.809 37.952 1.00 54.40 C
ATOM 14 N9 G B 46 49.838 163.928 39.112 1.00 55.83 N
ATOM 15 C8 G B 46 50.448 164.191 40.316 1.00 55.21 C
ATOM 16 N7 G B 46 50.381 163.190 41.153 1.00 55.12 N
ATOM 17 C5 G B 46 49.689 162.205 40.459 1.00 55.72 C
ATOM 18 C6 G B 46 49.322 160.889 40.848 1.00 54.99 C
ATOM 19 O6 G B 46 49.536 160.316 41.920 1.00 55.21 O
ATOM 20 N1 G B 46 48.635 160.229 39.835 1.00 54.84 N
ATOM 21 C2 G B 46 48.337 160.760 38.607 1.00 54.85 C
ATOM 22 N2 G B 46 47.671 159.957 37.765 1.00 54.87 N
ATOM 23 N3 G B 46 48.668 161.983 38.230 1.00 54.56 N
ATOM 24 C4 G B 46 49.342 162.645 39.200 1.00 55.90 C
ATOM 25 P C B 47 48.900 168.352 35.339 1.00 57.41 P
ATOM 26 OP1 C B 47 47.590 168.297 34.642 1.00 58.19 O
ATOM 27 OP2 C B 47 50.136 168.657 34.567 1.00 55.94 O
ATOM 28 O5' C B 47 48.762 169.392 36.537 1.00 57.26 O
TER
ATOM 2 P A A 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 3 OP1 A A 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 4 OP2 A A 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 5 O5' A A 60 51.494 160.349 32.278 1.00 49.83 O
ATOM 6 C5' A A 60 50.093 160.577 32.507 1.00 52.25 C
ATOM 7 C4' A A 60 49.332 159.273 32.457 1.00 54.08 C
ATOM 8 O4' A A 60 49.860 158.365 33.456 1.00 53.75 O
ATOM 9 C3' A A 60 47.847 159.397 32.756 1.00 57.22 C
ATOM 10 O3' A A 60 47.140 158.388 32.061 1.00 60.87 O
ATOM 11 C2' A A 60 47.780 159.125 34.249 1.00 57.20 C
ATOM 12 O2' A A 60 46.516 158.623 34.637 1.00 60.57 O
ATOM 13 C1' A A 60 48.863 158.064 34.410 1.00 55.25 C
ATOM 14 N9 A A 60 49.499 158.082 35.723 1.00 55.61 N
ATOM 15 C8 A A 60 49.594 157.051 36.617 1.00 56.98 C
ATOM 16 N7 A A 60 50.278 157.347 37.695 1.00 58.44 N
ATOM 17 C5 A A 60 50.649 158.670 37.503 1.00 58.17 C
ATOM 18 C6 A A 60 51.399 159.567 38.284 1.00 57.81 C
ATOM 19 N6 A A 60 51.948 159.250 39.460 1.00 57.81 N
ATOM 20 N1 A A 60 51.572 160.819 37.808 1.00 57.22 N
ATOM 21 C2 A A 60 51.031 161.134 36.629 1.00 57.00 C
ATOM 22 N3 A A 60 50.313 160.380 35.802 1.00 57.67 N
ATOM 23 C4 A A 60 50.159 159.142 36.302 1.00 57.35 C
ATOM 24 P G A 61 46.650 158.659 30.560 1.00 64.19 P
ATOM 25 OP1 G A 61 46.149 160.065 30.472 1.00 63.24 O
ATOM 26 OP2 G A 61 45.758 157.527 30.173 1.00 64.36 O
ATOM 27 O5' G A 61 47.999 158.556 29.724 1.00 60.75 O
TER
ATOM 1 O3' U B 45 55.390 165.561 35.996 1.00 54.38 O
ATOM 2 P G B 46 54.487 166.563 36.865 1.00 55.00 P
ATOM 3 OP1 G B 46 54.244 167.767 36.040 1.00 55.70 O
ATOM 4 OP2 G B 46 55.102 166.707 38.201 1.00 56.35 O
ATOM 5 O5' G B 46 53.104 165.794 37.005 1.00 54.35 O
ATOM 6 C5' G B 46 52.425 165.333 35.839 1.00 53.60 C
ATOM 7 C4' G B 46 50.942 165.385 36.050 1.00 54.27 C
ATOM 8 O4' G B 46 50.546 164.300 36.925 1.00 54.94 O
ATOM 9 C3' G B 46 50.389 166.661 36.675 1.00 54.61 C
ATOM 10 O3' G B 46 49.130 166.945 36.076 1.00 57.10 O
ATOM 11 C2' G B 46 50.173 166.254 38.129 1.00 53.33 C
ATOM 12 O2' G B 46 49.151 166.996 38.755 1.00 52.20 O
ATOM 13 C1' G B 46 49.725 164.809 37.952 1.00 54.40 C
ATOM 14 N9 G B 46 49.838 163.928 39.112 1.00 55.83 N
ATOM 15 C8 G B 46 50.448 164.191 40.316 1.00 55.21 C
ATOM 16 N7 G B 46 50.381 163.190 41.153 1.00 55.12 N
ATOM 17 C5 G B 46 49.689 162.205 40.459 1.00 55.72 C
ATOM 18 C6 G B 46 49.322 160.889 40.848 1.00 54.99 C
ATOM 19 O6 G B 46 49.536 160.316 41.920 1.00 55.21 O
ATOM 20 N1 G B 46 48.635 160.229 39.835 1.00 54.84 N
ATOM 21 C2 G B 46 48.337 160.760 38.607 1.00 54.85 C
ATOM 22 N2 G B 46 47.671 159.957 37.765 1.00 54.87 N
ATOM 23 N3 G B 46 48.668 161.983 38.230 1.00 54.56 N
ATOM 24 C4 G B 46 49.342 162.645 39.200 1.00 55.90 C
ATOM 25 P C B 47 48.900 168.352 35.339 1.00 57.41 P
ATOM 26 OP1 C B 47 47.590 168.297 34.642 1.00 58.19 O
ATOM 27 OP2 C B 47 50.136 168.657 34.567 1.00 55.94 O
ATOM 28 O5' C B 47 48.762 169.392 36.537 1.00 57.26 O
TER
Atoms:
OP1: (51.852,162.803,32.328)
OP2: (53.243,161.218,33.755)
C3': (47.847,159.397,32.756)
C1': (48.863,158.064,34.410)
C5': (50.093,160.577,32.507)
O4': (49.860,158.365,33.456)
C8: (49.594,157.051,36.617)
O2': (46.516,158.623,34.637)
C6: (51.399,159.567,38.284)
C5: (50.649,158.670,37.503)
C4: (50.159,159.142,36.302)
P: (52.561,161.512,32.486)
C4': (49.332,159.273,32.457)
C2': (47.780,159.125,34.249)
C2: (51.031,161.134,36.629)
N1: (51.572,160.819,37.808)
N3: (50.313,160.380,35.802)
N6: (51.948,159.250,39.460)
N7: (50.278,157.347,37.695)
N9: (49.499,158.082,35.723)
O5': (51.494,160.349,32.278)
O3': (47.140,158.388,32.061)
OP2: (53.243,161.218,33.755)
C3': (47.847,159.397,32.756)
C1': (48.863,158.064,34.410)
C5': (50.093,160.577,32.507)
O4': (49.860,158.365,33.456)
C8: (49.594,157.051,36.617)
O2': (46.516,158.623,34.637)
C6: (51.399,159.567,38.284)
C5: (50.649,158.670,37.503)
C4: (50.159,159.142,36.302)
P: (52.561,161.512,32.486)
C4': (49.332,159.273,32.457)
C2': (47.780,159.125,34.249)
C2: (51.031,161.134,36.629)
N1: (51.572,160.819,37.808)
N3: (50.313,160.380,35.802)
N6: (51.948,159.250,39.460)
N7: (50.278,157.347,37.695)
N9: (49.499,158.082,35.723)
O5': (51.494,160.349,32.278)
O3': (47.140,158.388,32.061)
OP1: (54.244,167.767,36.040)
OP2: (55.102,166.707,38.201)
C3': (50.389,166.661,36.675)
C1': (49.725,164.809,37.952)
C5': (52.425,165.333,35.839)
O6: (49.536,160.316,41.920)
O4': (50.546,164.300,36.925)
C8: (50.448,164.191,40.316)
C2: (48.337,160.760,38.607)
C6: (49.322,160.889,40.848)
C5: (49.689,162.205,40.459)
C4: (49.342,162.645,39.200)
P: (54.487,166.563,36.865)
C4': (50.942,165.385,36.050)
C2': (50.173,166.254,38.129)
O2': (49.151,166.996,38.755)
N1: (48.635,160.229,39.835)
N2: (47.671,159.957,37.765)
N3: (48.668,161.983,38.230)
N7: (50.381,163.190,41.153)
N9: (49.838,163.928,39.112)
O5': (53.104,165.794,37.005)
O3': (49.130,166.945,36.076)
OP2: (55.102,166.707,38.201)
C3': (50.389,166.661,36.675)
C1': (49.725,164.809,37.952)
C5': (52.425,165.333,35.839)
O6: (49.536,160.316,41.920)
O4': (50.546,164.300,36.925)
C8: (50.448,164.191,40.316)
C2: (48.337,160.760,38.607)
C6: (49.322,160.889,40.848)
C5: (49.689,162.205,40.459)
C4: (49.342,162.645,39.200)
P: (54.487,166.563,36.865)
C4': (50.942,165.385,36.050)
C2': (50.173,166.254,38.129)
O2': (49.151,166.996,38.755)
N1: (48.635,160.229,39.835)
N2: (47.671,159.957,37.765)
N3: (48.668,161.983,38.230)
N7: (50.381,163.190,41.153)
N9: (49.838,163.928,39.112)
O5': (53.104,165.794,37.005)
O3': (49.130,166.945,36.076)
Image (generated by PyMOL):