Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:A2:B14
Extra
PDB:
ATOM 1 O3' C A 1 6.843 32.696 45.089 1.00 41.47 O
ATOM 2 P A A 2 6.064 32.481 46.477 1.00 42.90 P
ATOM 3 OP1 A A 2 6.661 33.398 47.480 1.00 42.93 O
ATOM 4 OP2 A A 2 6.017 31.020 46.750 1.00 42.94 O
ATOM 5 O5' A A 2 4.597 33.017 46.163 1.00 42.47 O
ATOM 6 C5' A A 2 4.386 34.397 45.895 1.00 40.66 C
ATOM 7 C4' A A 2 2.935 34.658 45.596 1.00 39.67 C
ATOM 8 O4' A A 2 2.583 34.068 44.325 1.00 38.69 O
ATOM 9 C3' A A 2 1.942 34.038 46.558 1.00 39.90 C
ATOM 10 O3' A A 2 1.783 34.820 47.726 1.00 38.32 O
ATOM 11 C2' A A 2 0.668 34.037 45.731 1.00 39.68 C
ATOM 12 O2' A A 2 0.057 35.312 45.720 1.00 38.65 O
ATOM 13 C1' A A 2 1.214 33.687 44.344 1.00 39.68 C
ATOM 14 N9 A A 2 1.127 32.257 44.031 1.00 40.85 N
ATOM 15 C8 A A 2 2.070 31.277 44.265 1.00 39.99 C
ATOM 16 N7 A A 2 1.703 30.083 43.862 1.00 39.04 N
ATOM 17 C5 A A 2 0.436 30.286 43.327 1.00 39.26 C
ATOM 18 C6 A A 2 -0.488 29.411 42.728 1.00 38.36 C
ATOM 19 N6 A A 2 -0.265 28.110 42.545 1.00 35.45 N
ATOM 20 N1 A A 2 -1.664 29.929 42.313 1.00 39.16 N
ATOM 21 C2 A A 2 -1.882 31.240 42.481 1.00 38.88 C
ATOM 22 N3 A A 2 -1.092 32.164 43.018 1.00 39.11 N
ATOM 23 C4 A A 2 0.067 31.617 43.429 1.00 39.50 C
ATOM 24 P G A 3 1.140 34.150 49.030 1.00 40.53 P
ATOM 25 OP1 G A 3 1.219 35.142 50.136 1.00 41.14 O
ATOM 26 OP2 G A 3 1.723 32.802 49.211 1.00 38.12 O
ATOM 27 O5' G A 3 -0.393 33.998 48.633 1.00 39.75 O
TER
ATOM 1 O3' U B 13 -8.610 30.105 37.536 1.00 36.30 O
ATOM 2 P G B 14 -7.720 30.564 36.270 1.00 38.07 P
ATOM 3 OP1 G B 14 -8.637 31.239 35.312 1.00 36.27 O
ATOM 4 OP2 G B 14 -6.901 29.416 35.815 1.00 37.57 O
ATOM 5 O5' G B 14 -6.740 31.668 36.870 1.00 36.70 O
ATOM 6 C5' G B 14 -7.250 32.936 37.253 1.00 39.14 C
ATOM 7 C4' G B 14 -6.126 33.856 37.635 1.00 41.26 C
ATOM 8 O4' G B 14 -5.510 33.367 38.859 1.00 41.31 O
ATOM 9 C3' G B 14 -4.976 33.934 36.645 1.00 41.62 C
ATOM 10 O3' G B 14 -5.243 34.797 35.538 1.00 41.73 O
ATOM 11 C2' G B 14 -3.844 34.415 37.543 1.00 40.87 C
ATOM 12 O2' G B 14 -3.916 35.790 37.863 1.00 40.97 O
ATOM 13 C1' G B 14 -4.113 33.595 38.806 1.00 41.20 C
ATOM 14 N9 G B 14 -3.429 32.304 38.782 1.00 39.46 N
ATOM 15 C8 G B 14 -3.925 31.091 38.370 1.00 38.61 C
ATOM 16 N7 G B 14 -3.057 30.121 38.483 1.00 38.35 N
ATOM 17 C5 G B 14 -1.926 30.735 39.001 1.00 37.93 C
ATOM 18 C6 G B 14 -0.663 30.197 39.356 1.00 38.64 C
ATOM 19 O6 G B 14 -0.279 29.018 39.310 1.00 38.41 O
ATOM 20 N1 G B 14 0.198 31.186 39.819 1.00 38.07 N
ATOM 21 C2 G B 14 -0.118 32.514 39.939 1.00 37.07 C
ATOM 22 N2 G B 14 0.845 33.317 40.382 1.00 37.10 N
ATOM 23 N3 G B 14 -1.293 33.018 39.640 1.00 37.39 N
ATOM 24 C4 G B 14 -2.141 32.082 39.178 1.00 38.00 C
ATOM 25 P C B 15 -4.440 34.587 34.146 1.00 43.98 P
ATOM 26 OP1 C B 15 -4.897 35.655 33.213 1.00 44.22 O
ATOM 27 OP2 C B 15 -4.553 33.166 33.728 1.00 42.37 O
ATOM 28 O5' C B 15 -2.918 34.886 34.541 1.00 40.74 O
TER
ATOM 2 P A A 2 6.064 32.481 46.477 1.00 42.90 P
ATOM 3 OP1 A A 2 6.661 33.398 47.480 1.00 42.93 O
ATOM 4 OP2 A A 2 6.017 31.020 46.750 1.00 42.94 O
ATOM 5 O5' A A 2 4.597 33.017 46.163 1.00 42.47 O
ATOM 6 C5' A A 2 4.386 34.397 45.895 1.00 40.66 C
ATOM 7 C4' A A 2 2.935 34.658 45.596 1.00 39.67 C
ATOM 8 O4' A A 2 2.583 34.068 44.325 1.00 38.69 O
ATOM 9 C3' A A 2 1.942 34.038 46.558 1.00 39.90 C
ATOM 10 O3' A A 2 1.783 34.820 47.726 1.00 38.32 O
ATOM 11 C2' A A 2 0.668 34.037 45.731 1.00 39.68 C
ATOM 12 O2' A A 2 0.057 35.312 45.720 1.00 38.65 O
ATOM 13 C1' A A 2 1.214 33.687 44.344 1.00 39.68 C
ATOM 14 N9 A A 2 1.127 32.257 44.031 1.00 40.85 N
ATOM 15 C8 A A 2 2.070 31.277 44.265 1.00 39.99 C
ATOM 16 N7 A A 2 1.703 30.083 43.862 1.00 39.04 N
ATOM 17 C5 A A 2 0.436 30.286 43.327 1.00 39.26 C
ATOM 18 C6 A A 2 -0.488 29.411 42.728 1.00 38.36 C
ATOM 19 N6 A A 2 -0.265 28.110 42.545 1.00 35.45 N
ATOM 20 N1 A A 2 -1.664 29.929 42.313 1.00 39.16 N
ATOM 21 C2 A A 2 -1.882 31.240 42.481 1.00 38.88 C
ATOM 22 N3 A A 2 -1.092 32.164 43.018 1.00 39.11 N
ATOM 23 C4 A A 2 0.067 31.617 43.429 1.00 39.50 C
ATOM 24 P G A 3 1.140 34.150 49.030 1.00 40.53 P
ATOM 25 OP1 G A 3 1.219 35.142 50.136 1.00 41.14 O
ATOM 26 OP2 G A 3 1.723 32.802 49.211 1.00 38.12 O
ATOM 27 O5' G A 3 -0.393 33.998 48.633 1.00 39.75 O
TER
ATOM 1 O3' U B 13 -8.610 30.105 37.536 1.00 36.30 O
ATOM 2 P G B 14 -7.720 30.564 36.270 1.00 38.07 P
ATOM 3 OP1 G B 14 -8.637 31.239 35.312 1.00 36.27 O
ATOM 4 OP2 G B 14 -6.901 29.416 35.815 1.00 37.57 O
ATOM 5 O5' G B 14 -6.740 31.668 36.870 1.00 36.70 O
ATOM 6 C5' G B 14 -7.250 32.936 37.253 1.00 39.14 C
ATOM 7 C4' G B 14 -6.126 33.856 37.635 1.00 41.26 C
ATOM 8 O4' G B 14 -5.510 33.367 38.859 1.00 41.31 O
ATOM 9 C3' G B 14 -4.976 33.934 36.645 1.00 41.62 C
ATOM 10 O3' G B 14 -5.243 34.797 35.538 1.00 41.73 O
ATOM 11 C2' G B 14 -3.844 34.415 37.543 1.00 40.87 C
ATOM 12 O2' G B 14 -3.916 35.790 37.863 1.00 40.97 O
ATOM 13 C1' G B 14 -4.113 33.595 38.806 1.00 41.20 C
ATOM 14 N9 G B 14 -3.429 32.304 38.782 1.00 39.46 N
ATOM 15 C8 G B 14 -3.925 31.091 38.370 1.00 38.61 C
ATOM 16 N7 G B 14 -3.057 30.121 38.483 1.00 38.35 N
ATOM 17 C5 G B 14 -1.926 30.735 39.001 1.00 37.93 C
ATOM 18 C6 G B 14 -0.663 30.197 39.356 1.00 38.64 C
ATOM 19 O6 G B 14 -0.279 29.018 39.310 1.00 38.41 O
ATOM 20 N1 G B 14 0.198 31.186 39.819 1.00 38.07 N
ATOM 21 C2 G B 14 -0.118 32.514 39.939 1.00 37.07 C
ATOM 22 N2 G B 14 0.845 33.317 40.382 1.00 37.10 N
ATOM 23 N3 G B 14 -1.293 33.018 39.640 1.00 37.39 N
ATOM 24 C4 G B 14 -2.141 32.082 39.178 1.00 38.00 C
ATOM 25 P C B 15 -4.440 34.587 34.146 1.00 43.98 P
ATOM 26 OP1 C B 15 -4.897 35.655 33.213 1.00 44.22 O
ATOM 27 OP2 C B 15 -4.553 33.166 33.728 1.00 42.37 O
ATOM 28 O5' C B 15 -2.918 34.886 34.541 1.00 40.74 O
TER
Atoms:
OP1: (6.661,33.398,47.480)
OP2: (6.017,31.020,46.750)
C3': (1.942,34.038,46.558)
C1': (1.214,33.687,44.344)
C5': (4.386,34.397,45.895)
O4': (2.583,34.068,44.325)
C8: (2.070,31.277,44.265)
O2': (0.057,35.312,45.720)
C6: (-0.488,29.411,42.728)
C5: (0.436,30.286,43.327)
C4: (0.067,31.617,43.429)
P: (6.064,32.481,46.477)
C4': (2.935,34.658,45.596)
C2': (0.668,34.037,45.731)
C2: (-1.882,31.240,42.481)
N1: (-1.664,29.929,42.313)
N3: (-1.092,32.164,43.018)
N6: (-0.265,28.110,42.545)
N7: (1.703,30.083,43.862)
N9: (1.127,32.257,44.031)
O5': (4.597,33.017,46.163)
O3': (1.783,34.820,47.726)
OP2: (6.017,31.020,46.750)
C3': (1.942,34.038,46.558)
C1': (1.214,33.687,44.344)
C5': (4.386,34.397,45.895)
O4': (2.583,34.068,44.325)
C8: (2.070,31.277,44.265)
O2': (0.057,35.312,45.720)
C6: (-0.488,29.411,42.728)
C5: (0.436,30.286,43.327)
C4: (0.067,31.617,43.429)
P: (6.064,32.481,46.477)
C4': (2.935,34.658,45.596)
C2': (0.668,34.037,45.731)
C2: (-1.882,31.240,42.481)
N1: (-1.664,29.929,42.313)
N3: (-1.092,32.164,43.018)
N6: (-0.265,28.110,42.545)
N7: (1.703,30.083,43.862)
N9: (1.127,32.257,44.031)
O5': (4.597,33.017,46.163)
O3': (1.783,34.820,47.726)
OP1: (-8.637,31.239,35.312)
OP2: (-6.901,29.416,35.815)
C3': (-4.976,33.934,36.645)
C1': (-4.113,33.595,38.806)
C5': (-7.250,32.936,37.253)
O6: (-0.279,29.018,39.310)
O4': (-5.510,33.367,38.859)
C8: (-3.925,31.091,38.370)
C2: (-0.118,32.514,39.939)
C6: (-0.663,30.197,39.356)
C5: (-1.926,30.735,39.001)
C4: (-2.141,32.082,39.178)
P: (-7.720,30.564,36.270)
C4': (-6.126,33.856,37.635)
C2': (-3.844,34.415,37.543)
O2': (-3.916,35.790,37.863)
N1: (0.198,31.186,39.819)
N2: (0.845,33.317,40.382)
N3: (-1.293,33.018,39.640)
N7: (-3.057,30.121,38.483)
N9: (-3.429,32.304,38.782)
O5': (-6.740,31.668,36.870)
O3': (-5.243,34.797,35.538)
OP2: (-6.901,29.416,35.815)
C3': (-4.976,33.934,36.645)
C1': (-4.113,33.595,38.806)
C5': (-7.250,32.936,37.253)
O6: (-0.279,29.018,39.310)
O4': (-5.510,33.367,38.859)
C8: (-3.925,31.091,38.370)
C2: (-0.118,32.514,39.939)
C6: (-0.663,30.197,39.356)
C5: (-1.926,30.735,39.001)
C4: (-2.141,32.082,39.178)
P: (-7.720,30.564,36.270)
C4': (-6.126,33.856,37.635)
C2': (-3.844,34.415,37.543)
O2': (-3.916,35.790,37.863)
N1: (0.198,31.186,39.819)
N2: (0.845,33.317,40.382)
N3: (-1.293,33.018,39.640)
N7: (-3.057,30.121,38.483)
N9: (-3.429,32.304,38.782)
O5': (-6.740,31.668,36.870)
O3': (-5.243,34.797,35.538)
Image (generated by PyMOL):