Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:B9:B7
Extra
PDB:
ATOM 1 O3' U A 8 7.737 1.420 -26.511 1.00 72.46 O
ATOM 2 P A A 9 7.443 0.640 -27.888 1.00 68.54 P
ATOM 3 OP1 A A 9 8.286 1.255 -28.945 1.00 65.43 O
ATOM 4 OP2 A A 9 5.965 0.578 -28.081 1.00 64.97 O
ATOM 5 O5' A A 9 7.975 -0.824 -27.557 1.00 63.11 O
ATOM 6 C5' A A 9 7.911 -1.329 -26.227 1.00 54.52 C
ATOM 7 C4' A A 9 9.062 -0.786 -25.412 1.00 48.84 C
ATOM 8 O4' A A 9 8.521 -0.149 -24.230 1.00 40.04 O
ATOM 9 C3' A A 9 10.039 -1.818 -24.884 1.00 48.54 C
ATOM 10 O3' A A 9 11.047 -2.168 -25.844 1.00 37.44 O
ATOM 11 C2' A A 9 10.574 -1.129 -23.634 1.00 40.95 C
ATOM 12 O2' A A 9 11.525 -0.133 -23.929 1.00 44.20 O
ATOM 13 C1' A A 9 9.309 -0.462 -23.110 1.00 37.17 C
ATOM 14 N9 A A 9 8.521 -1.359 -22.283 1.00 42.84 N
ATOM 15 C8 A A 9 7.241 -1.810 -22.501 1.00 46.51 C
ATOM 16 N7 A A 9 6.834 -2.693 -21.614 1.00 48.32 N
ATOM 17 C5 A A 9 7.913 -2.813 -20.747 1.00 38.67 C
ATOM 18 C6 A A 9 8.130 -3.600 -19.597 1.00 30.34 C
ATOM 19 N6 A A 9 7.256 -4.465 -19.113 1.00 34.23 N
ATOM 20 N1 A A 9 9.318 -3.465 -18.953 1.00 36.59 N
ATOM 21 C2 A A 9 10.218 -2.611 -19.448 1.00 36.08 C
ATOM 22 N3 A A 9 10.136 -1.823 -20.532 1.00 45.38 N
ATOM 23 C4 A A 9 8.948 -1.976 -21.138 1.00 36.95 C
ATOM 24 P C A 10 11.439 -3.707 -26.030 1.00 41.25 P
ATOM 25 OP1 C A 10 12.499 -3.843 -27.030 1.00 43.43 O
ATOM 26 OP2 C A 10 10.161 -4.432 -26.212 1.00 40.29 O
ATOM 27 O5' C A 10 12.050 -4.141 -24.617 1.00 43.40 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
ATOM 2 P A A 9 7.443 0.640 -27.888 1.00 68.54 P
ATOM 3 OP1 A A 9 8.286 1.255 -28.945 1.00 65.43 O
ATOM 4 OP2 A A 9 5.965 0.578 -28.081 1.00 64.97 O
ATOM 5 O5' A A 9 7.975 -0.824 -27.557 1.00 63.11 O
ATOM 6 C5' A A 9 7.911 -1.329 -26.227 1.00 54.52 C
ATOM 7 C4' A A 9 9.062 -0.786 -25.412 1.00 48.84 C
ATOM 8 O4' A A 9 8.521 -0.149 -24.230 1.00 40.04 O
ATOM 9 C3' A A 9 10.039 -1.818 -24.884 1.00 48.54 C
ATOM 10 O3' A A 9 11.047 -2.168 -25.844 1.00 37.44 O
ATOM 11 C2' A A 9 10.574 -1.129 -23.634 1.00 40.95 C
ATOM 12 O2' A A 9 11.525 -0.133 -23.929 1.00 44.20 O
ATOM 13 C1' A A 9 9.309 -0.462 -23.110 1.00 37.17 C
ATOM 14 N9 A A 9 8.521 -1.359 -22.283 1.00 42.84 N
ATOM 15 C8 A A 9 7.241 -1.810 -22.501 1.00 46.51 C
ATOM 16 N7 A A 9 6.834 -2.693 -21.614 1.00 48.32 N
ATOM 17 C5 A A 9 7.913 -2.813 -20.747 1.00 38.67 C
ATOM 18 C6 A A 9 8.130 -3.600 -19.597 1.00 30.34 C
ATOM 19 N6 A A 9 7.256 -4.465 -19.113 1.00 34.23 N
ATOM 20 N1 A A 9 9.318 -3.465 -18.953 1.00 36.59 N
ATOM 21 C2 A A 9 10.218 -2.611 -19.448 1.00 36.08 C
ATOM 22 N3 A A 9 10.136 -1.823 -20.532 1.00 45.38 N
ATOM 23 C4 A A 9 8.948 -1.976 -21.138 1.00 36.95 C
ATOM 24 P C A 10 11.439 -3.707 -26.030 1.00 41.25 P
ATOM 25 OP1 C A 10 12.499 -3.843 -27.030 1.00 43.43 O
ATOM 26 OP2 C A 10 10.161 -4.432 -26.212 1.00 40.29 O
ATOM 27 O5' C A 10 12.050 -4.141 -24.617 1.00 43.40 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
Atoms:
OP1: (8.286,1.255,-28.945)
OP2: (5.965,0.578,-28.081)
C3': (10.039,-1.818,-24.884)
C1': (9.309,-0.462,-23.110)
C5': (7.911,-1.329,-26.227)
O4': (8.521,-0.149,-24.230)
C8: (7.241,-1.810,-22.501)
O2': (11.525,-0.133,-23.929)
C6: (8.130,-3.600,-19.597)
C5: (7.913,-2.813,-20.747)
C4: (8.948,-1.976,-21.138)
P: (7.443,0.640,-27.888)
C4': (9.062,-0.786,-25.412)
C2': (10.574,-1.129,-23.634)
C2: (10.218,-2.611,-19.448)
N1: (9.318,-3.465,-18.953)
N3: (10.136,-1.823,-20.532)
N6: (7.256,-4.465,-19.113)
N7: (6.834,-2.693,-21.614)
N9: (8.521,-1.359,-22.283)
O5': (7.975,-0.824,-27.557)
O3': (11.047,-2.168,-25.844)
OP2: (5.965,0.578,-28.081)
C3': (10.039,-1.818,-24.884)
C1': (9.309,-0.462,-23.110)
C5': (7.911,-1.329,-26.227)
O4': (8.521,-0.149,-24.230)
C8: (7.241,-1.810,-22.501)
O2': (11.525,-0.133,-23.929)
C6: (8.130,-3.600,-19.597)
C5: (7.913,-2.813,-20.747)
C4: (8.948,-1.976,-21.138)
P: (7.443,0.640,-27.888)
C4': (9.062,-0.786,-25.412)
C2': (10.574,-1.129,-23.634)
C2: (10.218,-2.611,-19.448)
N1: (9.318,-3.465,-18.953)
N3: (10.136,-1.823,-20.532)
N6: (7.256,-4.465,-19.113)
N7: (6.834,-2.693,-21.614)
N9: (8.521,-1.359,-22.283)
O5': (7.975,-0.824,-27.557)
O3': (11.047,-2.168,-25.844)
OP1: (0.774,2.462,-24.240)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
Image (generated by PyMOL):