Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDI:S12:S1
Extra
PDB:
ATOM 1 O3' C A 11 -5.076 91.078 -0.583 0.00 67.61 O
ATOM 2 P A A 12 -3.768 90.146 -0.467 0.70 72.61 P
ATOM 3 OP1 A A 12 -4.339 88.761 -0.718 0.70 73.08 O
ATOM 4 OP2 A A 12 -3.029 90.475 0.839 0.70 73.90 O
ATOM 5 O5' A A 12 -2.832 90.629 -1.666 0.70 72.48 O
ATOM 6 C5' A A 12 -3.132 90.256 -3.034 0.70 71.44 C
ATOM 7 C4' A A 12 -2.137 90.910 -3.960 0.70 70.61 C
ATOM 8 O4' A A 12 -2.239 92.358 -3.804 0.70 69.28 O
ATOM 9 C3' A A 12 -0.663 90.584 -3.681 0.70 70.52 C
ATOM 10 O3' A A 12 -0.199 89.207 -3.841 0.70 70.67 O
ATOM 11 C2' A A 12 0.068 91.800 -4.273 0.70 69.19 C
ATOM 12 O2' A A 12 0.261 91.774 -5.705 0.70 71.38 O
ATOM 13 C1' A A 12 -0.942 92.924 -3.979 0.70 66.43 C
ATOM 14 N9 A A 12 -0.564 93.624 -2.737 0.70 60.61 N
ATOM 15 C8 A A 12 -1.008 93.411 -1.472 0.70 59.31 C
ATOM 16 N7 A A 12 -0.416 94.171 -0.591 0.70 56.58 N
ATOM 17 C5 A A 12 0.462 94.917 -1.333 0.70 56.11 C
ATOM 18 C6 A A 12 1.389 95.900 -0.983 0.70 55.61 C
ATOM 19 N6 A A 12 1.561 96.295 0.290 0.70 54.70 N
ATOM 20 N1 A A 12 2.132 96.467 -1.974 0.70 54.61 N
ATOM 21 C2 A A 12 1.926 96.046 -3.239 0.70 55.18 C
ATOM 22 N3 A A 12 1.080 95.121 -3.678 0.70 55.44 N
ATOM 23 C4 A A 12 0.387 94.603 -2.678 0.70 57.15 C
TER
ATOM 1 P G B 1 6.116 104.152 -4.737 0.70 54.73 P
ATOM 2 OP1 G B 1 6.715 105.113 -5.791 0.70 53.14 O
ATOM 3 OP2 G B 1 5.581 104.741 -3.463 0.70 53.92 O
ATOM 4 O5' G B 1 4.859 103.365 -5.362 0.70 54.58 O
ATOM 5 C5' G B 1 4.974 102.542 -6.571 0.70 52.91 C
ATOM 6 C4' G B 1 3.690 101.753 -6.830 0.70 50.59 C
ATOM 7 O4' G B 1 3.589 100.564 -5.983 0.70 49.77 O
ATOM 8 C3' G B 1 2.354 102.468 -6.643 0.70 49.28 C
ATOM 9 O3' G B 1 2.041 103.341 -7.739 0.70 46.65 O
ATOM 10 C2' G B 1 1.365 101.298 -6.527 0.70 48.74 C
ATOM 11 O2' G B 1 0.949 100.796 -7.792 0.70 50.17 O
ATOM 12 C1' G B 1 2.208 100.220 -5.811 0.70 47.80 C
ATOM 13 N9 G B 1 1.886 100.130 -4.379 0.70 45.54 N
ATOM 14 C8 G B 1 2.392 100.931 -3.370 0.70 44.97 C
ATOM 15 N7 G B 1 1.842 100.711 -2.199 0.70 44.70 N
ATOM 16 C5 G B 1 0.934 99.688 -2.436 0.70 42.83 C
ATOM 17 C6 G B 1 0.010 99.057 -1.545 0.70 40.86 C
ATOM 18 O6 G B 1 -0.197 99.325 -0.355 0.70 38.83 O
ATOM 19 N1 G B 1 -0.718 98.049 -2.186 0.70 39.46 N
ATOM 20 C2 G B 1 -0.585 97.709 -3.517 0.70 40.40 C
ATOM 21 N2 G B 1 -1.373 96.698 -3.963 0.70 40.58 N
ATOM 22 N3 G B 1 0.259 98.311 -4.367 0.70 41.81 N
ATOM 23 C4 G B 1 0.973 99.286 -3.766 0.70 43.79 C
ATOM 24 P A B 2 2.112 104.948 -7.534 0.70 43.16 P
ATOM 25 OP1 A B 2 3.413 105.411 -8.134 0.70 42.60 O
ATOM 26 OP2 A B 2 1.790 105.294 -6.113 0.70 44.26 O
ATOM 27 O5' A B 2 0.927 105.495 -8.453 0.70 42.79 O
TER
ATOM 2 P A A 12 -3.768 90.146 -0.467 0.70 72.61 P
ATOM 3 OP1 A A 12 -4.339 88.761 -0.718 0.70 73.08 O
ATOM 4 OP2 A A 12 -3.029 90.475 0.839 0.70 73.90 O
ATOM 5 O5' A A 12 -2.832 90.629 -1.666 0.70 72.48 O
ATOM 6 C5' A A 12 -3.132 90.256 -3.034 0.70 71.44 C
ATOM 7 C4' A A 12 -2.137 90.910 -3.960 0.70 70.61 C
ATOM 8 O4' A A 12 -2.239 92.358 -3.804 0.70 69.28 O
ATOM 9 C3' A A 12 -0.663 90.584 -3.681 0.70 70.52 C
ATOM 10 O3' A A 12 -0.199 89.207 -3.841 0.70 70.67 O
ATOM 11 C2' A A 12 0.068 91.800 -4.273 0.70 69.19 C
ATOM 12 O2' A A 12 0.261 91.774 -5.705 0.70 71.38 O
ATOM 13 C1' A A 12 -0.942 92.924 -3.979 0.70 66.43 C
ATOM 14 N9 A A 12 -0.564 93.624 -2.737 0.70 60.61 N
ATOM 15 C8 A A 12 -1.008 93.411 -1.472 0.70 59.31 C
ATOM 16 N7 A A 12 -0.416 94.171 -0.591 0.70 56.58 N
ATOM 17 C5 A A 12 0.462 94.917 -1.333 0.70 56.11 C
ATOM 18 C6 A A 12 1.389 95.900 -0.983 0.70 55.61 C
ATOM 19 N6 A A 12 1.561 96.295 0.290 0.70 54.70 N
ATOM 20 N1 A A 12 2.132 96.467 -1.974 0.70 54.61 N
ATOM 21 C2 A A 12 1.926 96.046 -3.239 0.70 55.18 C
ATOM 22 N3 A A 12 1.080 95.121 -3.678 0.70 55.44 N
ATOM 23 C4 A A 12 0.387 94.603 -2.678 0.70 57.15 C
TER
ATOM 1 P G B 1 6.116 104.152 -4.737 0.70 54.73 P
ATOM 2 OP1 G B 1 6.715 105.113 -5.791 0.70 53.14 O
ATOM 3 OP2 G B 1 5.581 104.741 -3.463 0.70 53.92 O
ATOM 4 O5' G B 1 4.859 103.365 -5.362 0.70 54.58 O
ATOM 5 C5' G B 1 4.974 102.542 -6.571 0.70 52.91 C
ATOM 6 C4' G B 1 3.690 101.753 -6.830 0.70 50.59 C
ATOM 7 O4' G B 1 3.589 100.564 -5.983 0.70 49.77 O
ATOM 8 C3' G B 1 2.354 102.468 -6.643 0.70 49.28 C
ATOM 9 O3' G B 1 2.041 103.341 -7.739 0.70 46.65 O
ATOM 10 C2' G B 1 1.365 101.298 -6.527 0.70 48.74 C
ATOM 11 O2' G B 1 0.949 100.796 -7.792 0.70 50.17 O
ATOM 12 C1' G B 1 2.208 100.220 -5.811 0.70 47.80 C
ATOM 13 N9 G B 1 1.886 100.130 -4.379 0.70 45.54 N
ATOM 14 C8 G B 1 2.392 100.931 -3.370 0.70 44.97 C
ATOM 15 N7 G B 1 1.842 100.711 -2.199 0.70 44.70 N
ATOM 16 C5 G B 1 0.934 99.688 -2.436 0.70 42.83 C
ATOM 17 C6 G B 1 0.010 99.057 -1.545 0.70 40.86 C
ATOM 18 O6 G B 1 -0.197 99.325 -0.355 0.70 38.83 O
ATOM 19 N1 G B 1 -0.718 98.049 -2.186 0.70 39.46 N
ATOM 20 C2 G B 1 -0.585 97.709 -3.517 0.70 40.40 C
ATOM 21 N2 G B 1 -1.373 96.698 -3.963 0.70 40.58 N
ATOM 22 N3 G B 1 0.259 98.311 -4.367 0.70 41.81 N
ATOM 23 C4 G B 1 0.973 99.286 -3.766 0.70 43.79 C
ATOM 24 P A B 2 2.112 104.948 -7.534 0.70 43.16 P
ATOM 25 OP1 A B 2 3.413 105.411 -8.134 0.70 42.60 O
ATOM 26 OP2 A B 2 1.790 105.294 -6.113 0.70 44.26 O
ATOM 27 O5' A B 2 0.927 105.495 -8.453 0.70 42.79 O
TER
Atoms:
OP1: (-4.339,88.761,-0.718)
OP2: (-3.029,90.475,0.839)
C3': (-0.663,90.584,-3.681)
C1': (-0.942,92.924,-3.979)
C5': (-3.132,90.256,-3.034)
O4': (-2.239,92.358,-3.804)
C8: (-1.008,93.411,-1.472)
O2': (0.261,91.774,-5.705)
C6: (1.389,95.900,-0.983)
C5: (0.462,94.917,-1.333)
C4: (0.387,94.603,-2.678)
P: (-3.768,90.146,-0.467)
C4': (-2.137,90.910,-3.960)
C2': (0.068,91.800,-4.273)
C2: (1.926,96.046,-3.239)
N1: (2.132,96.467,-1.974)
N3: (1.080,95.121,-3.678)
N6: (1.561,96.295,0.290)
N7: (-0.416,94.171,-0.591)
N9: (-0.564,93.624,-2.737)
O5': (-2.832,90.629,-1.666)
O3': (-0.199,89.207,-3.841)
OP2: (-3.029,90.475,0.839)
C3': (-0.663,90.584,-3.681)
C1': (-0.942,92.924,-3.979)
C5': (-3.132,90.256,-3.034)
O4': (-2.239,92.358,-3.804)
C8: (-1.008,93.411,-1.472)
O2': (0.261,91.774,-5.705)
C6: (1.389,95.900,-0.983)
C5: (0.462,94.917,-1.333)
C4: (0.387,94.603,-2.678)
P: (-3.768,90.146,-0.467)
C4': (-2.137,90.910,-3.960)
C2': (0.068,91.800,-4.273)
C2: (1.926,96.046,-3.239)
N1: (2.132,96.467,-1.974)
N3: (1.080,95.121,-3.678)
N6: (1.561,96.295,0.290)
N7: (-0.416,94.171,-0.591)
N9: (-0.564,93.624,-2.737)
O5': (-2.832,90.629,-1.666)
O3': (-0.199,89.207,-3.841)
OP1: (6.715,105.113,-5.791)
OP2: (5.581,104.741,-3.463)
C3': (2.354,102.468,-6.643)
C1': (2.208,100.220,-5.811)
C5': (4.974,102.542,-6.571)
O6: (-0.197,99.325,-0.355)
O4': (3.589,100.564,-5.983)
C8: (2.392,100.931,-3.370)
C2: (-0.585,97.709,-3.517)
C6: (0.010,99.057,-1.545)
C5: (0.934,99.688,-2.436)
C4: (0.973,99.286,-3.766)
P: (6.116,104.152,-4.737)
C4': (3.690,101.753,-6.830)
C2': (1.365,101.298,-6.527)
O2': (0.949,100.796,-7.792)
N1: (-0.718,98.049,-2.186)
N2: (-1.373,96.698,-3.963)
N3: (0.259,98.311,-4.367)
N7: (1.842,100.711,-2.199)
N9: (1.886,100.130,-4.379)
O5': (4.859,103.365,-5.362)
O3': (2.041,103.341,-7.739)
OP2: (5.581,104.741,-3.463)
C3': (2.354,102.468,-6.643)
C1': (2.208,100.220,-5.811)
C5': (4.974,102.542,-6.571)
O6: (-0.197,99.325,-0.355)
O4': (3.589,100.564,-5.983)
C8: (2.392,100.931,-3.370)
C2: (-0.585,97.709,-3.517)
C6: (0.010,99.057,-1.545)
C5: (0.934,99.688,-2.436)
C4: (0.973,99.286,-3.766)
P: (6.116,104.152,-4.737)
C4': (3.690,101.753,-6.830)
C2': (1.365,101.298,-6.527)
O2': (0.949,100.796,-7.792)
N1: (-0.718,98.049,-2.186)
N2: (-1.373,96.698,-3.963)
N3: (0.259,98.311,-4.367)
N7: (1.842,100.711,-2.199)
N9: (1.886,100.130,-4.379)
O5': (4.859,103.365,-5.362)
O3': (2.041,103.341,-7.739)
Image (generated by PyMOL):