Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3L25:F3:C5
Extra
PDB:
ATOM 1 O3' C A 2 -19.572 10.922 -38.312 1.00 9.41 O
ATOM 2 P A A 3 -20.156 9.639 -39.076 1.00 8.10 P
ATOM 3 OP1 A A 3 -19.842 9.834 -40.516 1.00 8.16 O
ATOM 4 OP2 A A 3 -21.550 9.386 -38.666 1.00 6.55 O
ATOM 5 O5' A A 3 -19.291 8.445 -38.488 1.00 6.93 O
ATOM 6 C5' A A 3 -17.877 8.327 -38.802 1.00 5.96 C
ATOM 7 C4' A A 3 -17.282 7.145 -38.061 1.00 6.71 C
ATOM 8 O4' A A 3 -17.396 7.322 -36.619 1.00 7.24 O
ATOM 9 C3' A A 3 -18.021 5.840 -38.285 1.00 6.43 C
ATOM 10 O3' A A 3 -17.664 5.238 -39.539 1.00 6.39 O
ATOM 11 C2' A A 3 -17.569 5.012 -37.074 1.00 6.12 C
ATOM 12 O2' A A 3 -16.234 4.616 -37.202 1.00 8.09 O
ATOM 13 C1' A A 3 -17.646 6.061 -35.987 1.00 6.57 C
ATOM 14 N9 A A 3 -18.946 6.132 -35.319 1.00 6.73 N
ATOM 15 C8 A A 3 -19.963 7.011 -35.552 1.00 6.39 C
ATOM 16 N7 A A 3 -21.000 6.846 -34.766 1.00 6.00 N
ATOM 17 C5 A A 3 -20.622 5.769 -33.967 1.00 6.29 C
ATOM 18 C6 A A 3 -21.261 5.088 -32.916 1.00 5.51 C
ATOM 19 N6 A A 3 -22.474 5.433 -32.448 1.00 6.34 N
ATOM 20 N1 A A 3 -20.612 4.056 -32.338 1.00 5.06 N
ATOM 21 C2 A A 3 -19.388 3.706 -32.736 1.00 5.55 C
ATOM 22 N3 A A 3 -18.689 4.282 -33.714 1.00 7.77 N
ATOM 23 C4 A A 3 -19.366 5.315 -34.287 1.00 6.51 C
ATOM 24 P U A 4 -18.770 4.371 -40.314 1.00 6.66 P
ATOM 25 OP1 U A 4 -18.228 4.132 -41.672 1.00 6.96 O
ATOM 26 OP2 U A 4 -20.132 4.961 -40.196 1.00 6.31 O
ATOM 27 O5' U A 4 -18.789 2.993 -39.482 1.00 6.45 O
TER
ATOM 1 O3' U B 4 -18.866 -0.906 -25.489 1.00 8.02 O
ATOM 2 P G B 5 -18.115 0.312 -24.749 1.00 10.33 P
ATOM 3 OP1 G B 5 -17.215 -0.273 -23.760 1.00 7.76 O
ATOM 4 OP2 G B 5 -19.083 1.331 -24.373 1.00 11.95 O
ATOM 5 O5' G B 5 -17.229 0.961 -25.895 1.00 8.70 O
ATOM 6 C5' G B 5 -16.186 0.200 -26.519 1.00 9.89 C
ATOM 7 C4' G B 5 -15.554 1.012 -27.636 1.00 9.37 C
ATOM 8 O4' G B 5 -16.488 1.197 -28.731 1.00 9.49 O
ATOM 9 C3' G B 5 -15.151 2.444 -27.267 1.00 10.21 C
ATOM 10 O3' G B 5 -13.901 2.505 -26.582 1.00 9.61 O
ATOM 11 C2' G B 5 -15.066 3.082 -28.650 1.00 10.02 C
ATOM 12 O2' G B 5 -13.910 2.659 -29.335 1.00 13.36 O
ATOM 13 C1' G B 5 -16.315 2.497 -29.292 1.00 8.71 C
ATOM 14 N9 G B 5 -17.529 3.294 -29.074 1.00 7.40 N
ATOM 15 C8 G B 5 -18.546 3.084 -28.183 1.00 6.97 C
ATOM 16 N7 G B 5 -19.495 3.976 -28.234 1.00 6.48 N
ATOM 17 C5 G B 5 -19.077 4.839 -29.261 1.00 6.61 C
ATOM 18 C6 G B 5 -19.677 6.014 -29.799 1.00 8.23 C
ATOM 19 O6 G B 5 -20.768 6.540 -29.496 1.00 8.39 O
ATOM 20 N1 G B 5 -18.902 6.582 -30.809 1.00 6.88 N
ATOM 21 C2 G B 5 -17.683 6.094 -31.234 1.00 7.33 C
ATOM 22 N2 G B 5 -17.042 6.749 -32.214 1.00 6.63 N
ATOM 23 N3 G B 5 -17.119 5.009 -30.741 1.00 8.15 N
ATOM 24 C4 G B 5 -17.875 4.436 -29.767 1.00 7.01 C
ATOM 25 P C B 6 -13.595 3.656 -25.511 1.00 10.02 P
ATOM 26 OP1 C B 6 -12.269 3.315 -24.947 1.00 12.08 O
ATOM 27 OP2 C B 6 -14.785 3.950 -24.707 1.00 12.08 O
ATOM 28 O5' C B 6 -13.422 4.966 -26.448 1.00 9.36 O
TER
ATOM 2 P A A 3 -20.156 9.639 -39.076 1.00 8.10 P
ATOM 3 OP1 A A 3 -19.842 9.834 -40.516 1.00 8.16 O
ATOM 4 OP2 A A 3 -21.550 9.386 -38.666 1.00 6.55 O
ATOM 5 O5' A A 3 -19.291 8.445 -38.488 1.00 6.93 O
ATOM 6 C5' A A 3 -17.877 8.327 -38.802 1.00 5.96 C
ATOM 7 C4' A A 3 -17.282 7.145 -38.061 1.00 6.71 C
ATOM 8 O4' A A 3 -17.396 7.322 -36.619 1.00 7.24 O
ATOM 9 C3' A A 3 -18.021 5.840 -38.285 1.00 6.43 C
ATOM 10 O3' A A 3 -17.664 5.238 -39.539 1.00 6.39 O
ATOM 11 C2' A A 3 -17.569 5.012 -37.074 1.00 6.12 C
ATOM 12 O2' A A 3 -16.234 4.616 -37.202 1.00 8.09 O
ATOM 13 C1' A A 3 -17.646 6.061 -35.987 1.00 6.57 C
ATOM 14 N9 A A 3 -18.946 6.132 -35.319 1.00 6.73 N
ATOM 15 C8 A A 3 -19.963 7.011 -35.552 1.00 6.39 C
ATOM 16 N7 A A 3 -21.000 6.846 -34.766 1.00 6.00 N
ATOM 17 C5 A A 3 -20.622 5.769 -33.967 1.00 6.29 C
ATOM 18 C6 A A 3 -21.261 5.088 -32.916 1.00 5.51 C
ATOM 19 N6 A A 3 -22.474 5.433 -32.448 1.00 6.34 N
ATOM 20 N1 A A 3 -20.612 4.056 -32.338 1.00 5.06 N
ATOM 21 C2 A A 3 -19.388 3.706 -32.736 1.00 5.55 C
ATOM 22 N3 A A 3 -18.689 4.282 -33.714 1.00 7.77 N
ATOM 23 C4 A A 3 -19.366 5.315 -34.287 1.00 6.51 C
ATOM 24 P U A 4 -18.770 4.371 -40.314 1.00 6.66 P
ATOM 25 OP1 U A 4 -18.228 4.132 -41.672 1.00 6.96 O
ATOM 26 OP2 U A 4 -20.132 4.961 -40.196 1.00 6.31 O
ATOM 27 O5' U A 4 -18.789 2.993 -39.482 1.00 6.45 O
TER
ATOM 1 O3' U B 4 -18.866 -0.906 -25.489 1.00 8.02 O
ATOM 2 P G B 5 -18.115 0.312 -24.749 1.00 10.33 P
ATOM 3 OP1 G B 5 -17.215 -0.273 -23.760 1.00 7.76 O
ATOM 4 OP2 G B 5 -19.083 1.331 -24.373 1.00 11.95 O
ATOM 5 O5' G B 5 -17.229 0.961 -25.895 1.00 8.70 O
ATOM 6 C5' G B 5 -16.186 0.200 -26.519 1.00 9.89 C
ATOM 7 C4' G B 5 -15.554 1.012 -27.636 1.00 9.37 C
ATOM 8 O4' G B 5 -16.488 1.197 -28.731 1.00 9.49 O
ATOM 9 C3' G B 5 -15.151 2.444 -27.267 1.00 10.21 C
ATOM 10 O3' G B 5 -13.901 2.505 -26.582 1.00 9.61 O
ATOM 11 C2' G B 5 -15.066 3.082 -28.650 1.00 10.02 C
ATOM 12 O2' G B 5 -13.910 2.659 -29.335 1.00 13.36 O
ATOM 13 C1' G B 5 -16.315 2.497 -29.292 1.00 8.71 C
ATOM 14 N9 G B 5 -17.529 3.294 -29.074 1.00 7.40 N
ATOM 15 C8 G B 5 -18.546 3.084 -28.183 1.00 6.97 C
ATOM 16 N7 G B 5 -19.495 3.976 -28.234 1.00 6.48 N
ATOM 17 C5 G B 5 -19.077 4.839 -29.261 1.00 6.61 C
ATOM 18 C6 G B 5 -19.677 6.014 -29.799 1.00 8.23 C
ATOM 19 O6 G B 5 -20.768 6.540 -29.496 1.00 8.39 O
ATOM 20 N1 G B 5 -18.902 6.582 -30.809 1.00 6.88 N
ATOM 21 C2 G B 5 -17.683 6.094 -31.234 1.00 7.33 C
ATOM 22 N2 G B 5 -17.042 6.749 -32.214 1.00 6.63 N
ATOM 23 N3 G B 5 -17.119 5.009 -30.741 1.00 8.15 N
ATOM 24 C4 G B 5 -17.875 4.436 -29.767 1.00 7.01 C
ATOM 25 P C B 6 -13.595 3.656 -25.511 1.00 10.02 P
ATOM 26 OP1 C B 6 -12.269 3.315 -24.947 1.00 12.08 O
ATOM 27 OP2 C B 6 -14.785 3.950 -24.707 1.00 12.08 O
ATOM 28 O5' C B 6 -13.422 4.966 -26.448 1.00 9.36 O
TER
Atoms:
OP1: (-19.842,9.834,-40.516)
OP2: (-21.550,9.386,-38.666)
C3': (-18.021,5.840,-38.285)
C1': (-17.646,6.061,-35.987)
C5': (-17.877,8.327,-38.802)
O4': (-17.396,7.322,-36.619)
C8: (-19.963,7.011,-35.552)
O2': (-16.234,4.616,-37.202)
C6: (-21.261,5.088,-32.916)
C5: (-20.622,5.769,-33.967)
C4: (-19.366,5.315,-34.287)
P: (-20.156,9.639,-39.076)
C4': (-17.282,7.145,-38.061)
C2': (-17.569,5.012,-37.074)
C2: (-19.388,3.706,-32.736)
N1: (-20.612,4.056,-32.338)
N3: (-18.689,4.282,-33.714)
N6: (-22.474,5.433,-32.448)
N7: (-21.000,6.846,-34.766)
N9: (-18.946,6.132,-35.319)
O5': (-19.291,8.445,-38.488)
O3': (-17.664,5.238,-39.539)
OP2: (-21.550,9.386,-38.666)
C3': (-18.021,5.840,-38.285)
C1': (-17.646,6.061,-35.987)
C5': (-17.877,8.327,-38.802)
O4': (-17.396,7.322,-36.619)
C8: (-19.963,7.011,-35.552)
O2': (-16.234,4.616,-37.202)
C6: (-21.261,5.088,-32.916)
C5: (-20.622,5.769,-33.967)
C4: (-19.366,5.315,-34.287)
P: (-20.156,9.639,-39.076)
C4': (-17.282,7.145,-38.061)
C2': (-17.569,5.012,-37.074)
C2: (-19.388,3.706,-32.736)
N1: (-20.612,4.056,-32.338)
N3: (-18.689,4.282,-33.714)
N6: (-22.474,5.433,-32.448)
N7: (-21.000,6.846,-34.766)
N9: (-18.946,6.132,-35.319)
O5': (-19.291,8.445,-38.488)
O3': (-17.664,5.238,-39.539)
OP1: (-17.215,-0.273,-23.760)
OP2: (-19.083,1.331,-24.373)
C3': (-15.151,2.444,-27.267)
C1': (-16.315,2.497,-29.292)
C5': (-16.186,0.200,-26.519)
O6: (-20.768,6.540,-29.496)
O4': (-16.488,1.197,-28.731)
C8: (-18.546,3.084,-28.183)
C2: (-17.683,6.094,-31.234)
C6: (-19.677,6.014,-29.799)
C5: (-19.077,4.839,-29.261)
C4: (-17.875,4.436,-29.767)
P: (-18.115,0.312,-24.749)
C4': (-15.554,1.012,-27.636)
C2': (-15.066,3.082,-28.650)
O2': (-13.910,2.659,-29.335)
N1: (-18.902,6.582,-30.809)
N2: (-17.042,6.749,-32.214)
N3: (-17.119,5.009,-30.741)
N7: (-19.495,3.976,-28.234)
N9: (-17.529,3.294,-29.074)
O5': (-17.229,0.961,-25.895)
O3': (-13.901,2.505,-26.582)
OP2: (-19.083,1.331,-24.373)
C3': (-15.151,2.444,-27.267)
C1': (-16.315,2.497,-29.292)
C5': (-16.186,0.200,-26.519)
O6: (-20.768,6.540,-29.496)
O4': (-16.488,1.197,-28.731)
C8: (-18.546,3.084,-28.183)
C2: (-17.683,6.094,-31.234)
C6: (-19.677,6.014,-29.799)
C5: (-19.077,4.839,-29.261)
C4: (-17.875,4.436,-29.767)
P: (-18.115,0.312,-24.749)
C4': (-15.554,1.012,-27.636)
C2': (-15.066,3.082,-28.650)
O2': (-13.910,2.659,-29.335)
N1: (-18.902,6.582,-30.809)
N2: (-17.042,6.749,-32.214)
N3: (-17.119,5.009,-30.741)
N7: (-19.495,3.976,-28.234)
N9: (-17.529,3.294,-29.074)
O5': (-17.229,0.961,-25.895)
O3': (-13.901,2.505,-26.582)
Image (generated by PyMOL):