Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1206:1209
Extra
PDB:
ATOM 1 O3' C A 205 113.539 -10.196 108.517 1.00 65.55 O
ATOM 2 P A A 206 113.561 -11.786 108.257 1.00 59.25 P
ATOM 3 OP1 A A 206 113.601 -12.442 109.583 1.00 59.72 O
ATOM 4 OP2 A A 206 114.635 -12.068 107.282 1.00 59.33 O
ATOM 5 O5' A A 206 112.148 -12.043 107.596 1.00 58.55 O
ATOM 6 C5' A A 206 110.977 -11.607 108.260 1.00 58.34 C
ATOM 7 C4' A A 206 109.769 -11.998 107.505 1.00 57.70 C
ATOM 8 O4' A A 206 109.612 -11.186 106.306 1.00 57.25 O
ATOM 9 C3' A A 206 109.791 -13.410 107.004 1.00 57.60 C
ATOM 10 O3' A A 206 109.488 -14.318 108.056 1.00 57.86 O
ATOM 11 C2' A A 206 108.758 -13.362 105.889 1.00 56.91 C
ATOM 12 O2' A A 206 107.465 -13.418 106.441 1.00 56.65 O
ATOM 13 C1' A A 206 108.991 -11.948 105.311 1.00 56.76 C
ATOM 14 N9 A A 206 109.883 -11.961 104.147 1.00 56.71 N
ATOM 15 C8 A A 206 111.240 -11.845 104.187 1.00 57.18 C
ATOM 16 N7 A A 206 111.846 -11.882 103.013 1.00 57.05 N
ATOM 17 C5 A A 206 110.801 -12.006 102.129 1.00 56.44 C
ATOM 18 C6 A A 206 110.768 -12.086 100.734 1.00 56.05 C
ATOM 19 N6 A A 206 111.822 -12.089 99.928 1.00 56.19 N
ATOM 20 N1 A A 206 109.550 -12.188 100.170 1.00 55.49 N
ATOM 21 C2 A A 206 108.460 -12.209 100.952 1.00 55.34 C
ATOM 22 N3 A A 206 108.371 -12.129 102.278 1.00 55.68 N
ATOM 23 C4 A A 206 109.591 -12.044 102.814 1.00 56.23 C
ATOM 24 P U A 207 110.133 -15.773 108.097 1.00 61.70 P
ATOM 25 OP1 U A 207 110.316 -16.107 109.507 1.00 62.23 O
ATOM 26 OP2 U A 207 111.308 -15.766 107.212 1.00 61.82 O
ATOM 27 O5' U A 207 108.979 -16.662 107.461 1.00 61.16 O
TER
ATOM 1 O3' A B 208 102.500 -9.588 106.031 1.00 54.18 O
ATOM 2 P G B 209 101.100 -9.508 105.257 1.00 54.01 P
ATOM 3 OP1 G B 209 100.641 -8.103 105.287 1.00 53.87 O
ATOM 4 OP2 G B 209 100.230 -10.526 105.838 1.00 53.94 O
ATOM 5 O5' G B 209 101.499 -9.917 103.767 1.00 53.70 O
ATOM 6 C5' G B 209 102.305 -9.066 102.977 1.00 53.70 C
ATOM 7 C4' G B 209 102.027 -9.228 101.509 1.00 53.22 C
ATOM 8 O4' G B 209 103.014 -8.458 100.749 1.00 53.30 O
ATOM 9 C3' G B 209 102.122 -10.658 100.990 1.00 53.13 C
ATOM 10 O3' G B 209 101.190 -10.857 99.960 1.00 52.59 O
ATOM 11 C2' G B 209 103.489 -10.691 100.362 1.00 53.37 C
ATOM 12 O2' G B 209 103.632 -11.651 99.351 1.00 53.18 O
ATOM 13 C1' G B 209 103.589 -9.300 99.791 1.00 53.23 C
ATOM 14 N9 G B 209 104.949 -8.919 99.552 1.00 53.58 N
ATOM 15 C8 G B 209 105.420 -8.740 98.301 1.00 53.40 C
ATOM 16 N7 G B 209 106.701 -8.518 98.281 1.00 53.79 N
ATOM 17 C5 G B 209 107.125 -8.639 99.616 1.00 54.28 C
ATOM 18 C6 G B 209 108.426 -8.507 100.207 1.00 54.85 C
ATOM 19 O6 G B 209 109.497 -8.260 99.647 1.00 55.05 O
ATOM 20 N1 G B 209 108.393 -8.721 101.581 1.00 55.22 N
ATOM 21 C2 G B 209 107.264 -9.017 102.309 1.00 55.06 C
ATOM 22 N2 G B 209 107.455 -9.161 103.615 1.00 55.50 N
ATOM 23 N3 G B 209 106.039 -9.140 101.803 1.00 54.53 N
ATOM 24 C4 G B 209 106.026 -8.933 100.435 1.00 54.15 C
ATOM 25 P A B 210 99.781 -11.525 100.262 1.00 49.16 P
ATOM 26 OP1 A B 210 99.951 -12.460 101.394 1.00 49.54 O
ATOM 27 OP2 A B 210 99.272 -12.059 98.965 1.00 48.70 O
ATOM 28 O5' A B 210 98.903 -10.260 100.695 1.00 48.99 O
TER
ATOM 2 P A A 206 113.561 -11.786 108.257 1.00 59.25 P
ATOM 3 OP1 A A 206 113.601 -12.442 109.583 1.00 59.72 O
ATOM 4 OP2 A A 206 114.635 -12.068 107.282 1.00 59.33 O
ATOM 5 O5' A A 206 112.148 -12.043 107.596 1.00 58.55 O
ATOM 6 C5' A A 206 110.977 -11.607 108.260 1.00 58.34 C
ATOM 7 C4' A A 206 109.769 -11.998 107.505 1.00 57.70 C
ATOM 8 O4' A A 206 109.612 -11.186 106.306 1.00 57.25 O
ATOM 9 C3' A A 206 109.791 -13.410 107.004 1.00 57.60 C
ATOM 10 O3' A A 206 109.488 -14.318 108.056 1.00 57.86 O
ATOM 11 C2' A A 206 108.758 -13.362 105.889 1.00 56.91 C
ATOM 12 O2' A A 206 107.465 -13.418 106.441 1.00 56.65 O
ATOM 13 C1' A A 206 108.991 -11.948 105.311 1.00 56.76 C
ATOM 14 N9 A A 206 109.883 -11.961 104.147 1.00 56.71 N
ATOM 15 C8 A A 206 111.240 -11.845 104.187 1.00 57.18 C
ATOM 16 N7 A A 206 111.846 -11.882 103.013 1.00 57.05 N
ATOM 17 C5 A A 206 110.801 -12.006 102.129 1.00 56.44 C
ATOM 18 C6 A A 206 110.768 -12.086 100.734 1.00 56.05 C
ATOM 19 N6 A A 206 111.822 -12.089 99.928 1.00 56.19 N
ATOM 20 N1 A A 206 109.550 -12.188 100.170 1.00 55.49 N
ATOM 21 C2 A A 206 108.460 -12.209 100.952 1.00 55.34 C
ATOM 22 N3 A A 206 108.371 -12.129 102.278 1.00 55.68 N
ATOM 23 C4 A A 206 109.591 -12.044 102.814 1.00 56.23 C
ATOM 24 P U A 207 110.133 -15.773 108.097 1.00 61.70 P
ATOM 25 OP1 U A 207 110.316 -16.107 109.507 1.00 62.23 O
ATOM 26 OP2 U A 207 111.308 -15.766 107.212 1.00 61.82 O
ATOM 27 O5' U A 207 108.979 -16.662 107.461 1.00 61.16 O
TER
ATOM 1 O3' A B 208 102.500 -9.588 106.031 1.00 54.18 O
ATOM 2 P G B 209 101.100 -9.508 105.257 1.00 54.01 P
ATOM 3 OP1 G B 209 100.641 -8.103 105.287 1.00 53.87 O
ATOM 4 OP2 G B 209 100.230 -10.526 105.838 1.00 53.94 O
ATOM 5 O5' G B 209 101.499 -9.917 103.767 1.00 53.70 O
ATOM 6 C5' G B 209 102.305 -9.066 102.977 1.00 53.70 C
ATOM 7 C4' G B 209 102.027 -9.228 101.509 1.00 53.22 C
ATOM 8 O4' G B 209 103.014 -8.458 100.749 1.00 53.30 O
ATOM 9 C3' G B 209 102.122 -10.658 100.990 1.00 53.13 C
ATOM 10 O3' G B 209 101.190 -10.857 99.960 1.00 52.59 O
ATOM 11 C2' G B 209 103.489 -10.691 100.362 1.00 53.37 C
ATOM 12 O2' G B 209 103.632 -11.651 99.351 1.00 53.18 O
ATOM 13 C1' G B 209 103.589 -9.300 99.791 1.00 53.23 C
ATOM 14 N9 G B 209 104.949 -8.919 99.552 1.00 53.58 N
ATOM 15 C8 G B 209 105.420 -8.740 98.301 1.00 53.40 C
ATOM 16 N7 G B 209 106.701 -8.518 98.281 1.00 53.79 N
ATOM 17 C5 G B 209 107.125 -8.639 99.616 1.00 54.28 C
ATOM 18 C6 G B 209 108.426 -8.507 100.207 1.00 54.85 C
ATOM 19 O6 G B 209 109.497 -8.260 99.647 1.00 55.05 O
ATOM 20 N1 G B 209 108.393 -8.721 101.581 1.00 55.22 N
ATOM 21 C2 G B 209 107.264 -9.017 102.309 1.00 55.06 C
ATOM 22 N2 G B 209 107.455 -9.161 103.615 1.00 55.50 N
ATOM 23 N3 G B 209 106.039 -9.140 101.803 1.00 54.53 N
ATOM 24 C4 G B 209 106.026 -8.933 100.435 1.00 54.15 C
ATOM 25 P A B 210 99.781 -11.525 100.262 1.00 49.16 P
ATOM 26 OP1 A B 210 99.951 -12.460 101.394 1.00 49.54 O
ATOM 27 OP2 A B 210 99.272 -12.059 98.965 1.00 48.70 O
ATOM 28 O5' A B 210 98.903 -10.260 100.695 1.00 48.99 O
TER
Atoms:
OP1: (113.601,-12.442,109.583)
OP2: (114.635,-12.068,107.282)
C3': (109.791,-13.410,107.004)
C1': (108.991,-11.948,105.311)
C5': (110.977,-11.607,108.260)
O4': (109.612,-11.186,106.306)
C8: (111.240,-11.845,104.187)
O2': (107.465,-13.418,106.441)
C6: (110.768,-12.086,100.734)
C5: (110.801,-12.006,102.129)
C4: (109.591,-12.044,102.814)
P: (113.561,-11.786,108.257)
C4': (109.769,-11.998,107.505)
C2': (108.758,-13.362,105.889)
C2: (108.460,-12.209,100.952)
N1: (109.550,-12.188,100.170)
N3: (108.371,-12.129,102.278)
N6: (111.822,-12.089,99.928)
N7: (111.846,-11.882,103.013)
N9: (109.883,-11.961,104.147)
O5': (112.148,-12.043,107.596)
O3': (109.488,-14.318,108.056)
OP2: (114.635,-12.068,107.282)
C3': (109.791,-13.410,107.004)
C1': (108.991,-11.948,105.311)
C5': (110.977,-11.607,108.260)
O4': (109.612,-11.186,106.306)
C8: (111.240,-11.845,104.187)
O2': (107.465,-13.418,106.441)
C6: (110.768,-12.086,100.734)
C5: (110.801,-12.006,102.129)
C4: (109.591,-12.044,102.814)
P: (113.561,-11.786,108.257)
C4': (109.769,-11.998,107.505)
C2': (108.758,-13.362,105.889)
C2: (108.460,-12.209,100.952)
N1: (109.550,-12.188,100.170)
N3: (108.371,-12.129,102.278)
N6: (111.822,-12.089,99.928)
N7: (111.846,-11.882,103.013)
N9: (109.883,-11.961,104.147)
O5': (112.148,-12.043,107.596)
O3': (109.488,-14.318,108.056)
OP1: (100.641,-8.103,105.287)
OP2: (100.230,-10.526,105.838)
C3': (102.122,-10.658,100.990)
C1': (103.589,-9.300,99.791)
C5': (102.305,-9.066,102.977)
O6: (109.497,-8.260,99.647)
O4': (103.014,-8.458,100.749)
C8: (105.420,-8.740,98.301)
C2: (107.264,-9.017,102.309)
C6: (108.426,-8.507,100.207)
C5: (107.125,-8.639,99.616)
C4: (106.026,-8.933,100.435)
P: (101.100,-9.508,105.257)
C4': (102.027,-9.228,101.509)
C2': (103.489,-10.691,100.362)
O2': (103.632,-11.651,99.351)
N1: (108.393,-8.721,101.581)
N2: (107.455,-9.161,103.615)
N3: (106.039,-9.140,101.803)
N7: (106.701,-8.518,98.281)
N9: (104.949,-8.919,99.552)
O5': (101.499,-9.917,103.767)
O3': (101.190,-10.857,99.960)
OP2: (100.230,-10.526,105.838)
C3': (102.122,-10.658,100.990)
C1': (103.589,-9.300,99.791)
C5': (102.305,-9.066,102.977)
O6: (109.497,-8.260,99.647)
O4': (103.014,-8.458,100.749)
C8: (105.420,-8.740,98.301)
C2: (107.264,-9.017,102.309)
C6: (108.426,-8.507,100.207)
C5: (107.125,-8.639,99.616)
C4: (106.026,-8.933,100.435)
P: (101.100,-9.508,105.257)
C4': (102.027,-9.228,101.509)
C2': (103.489,-10.691,100.362)
O2': (103.632,-11.651,99.351)
N1: (108.393,-8.721,101.581)
N2: (107.455,-9.161,103.615)
N3: (106.039,-9.140,101.803)
N7: (106.701,-8.518,98.281)
N9: (104.949,-8.919,99.552)
O5': (101.499,-9.917,103.767)
O3': (101.190,-10.857,99.960)
Image (generated by PyMOL):