Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11161:11233
Extra
PDB:
ATOM 1 O3' C A1160 19.742 -15.248 -14.189 1.00 81.35 O
ATOM 2 P A A1161 19.805 -14.992 -15.759 1.00 88.03 P
ATOM 3 OP1 A A1161 19.104 -16.137 -16.413 1.00 88.56 O
ATOM 4 OP2 A A1161 21.237 -14.706 -16.117 1.00 87.97 O
ATOM 5 O5' A A1161 18.937 -13.685 -15.903 1.00 88.18 O
ATOM 6 C5' A A1161 19.397 -12.610 -16.673 1.00 88.46 C
ATOM 7 C4' A A1161 18.494 -11.431 -16.530 1.00 88.49 C
ATOM 8 O4' A A1161 18.738 -10.791 -15.247 1.00 87.74 O
ATOM 9 C3' A A1161 18.703 -10.339 -17.563 1.00 88.97 C
ATOM 10 O3' A A1161 17.979 -10.576 -18.768 1.00 89.77 O
ATOM 11 C2' A A1161 18.305 -9.066 -16.808 1.00 88.60 C
ATOM 12 O2' A A1161 16.889 -8.916 -16.738 1.00 88.81 O
ATOM 13 C1' A A1161 18.831 -9.393 -15.411 1.00 87.77 C
ATOM 14 N9 A A1161 20.244 -9.026 -15.285 1.00 87.46 N
ATOM 15 C8 A A1161 21.285 -9.898 -15.125 1.00 87.24 C
ATOM 16 N7 A A1161 22.445 -9.306 -15.071 1.00 87.01 N
ATOM 17 C5 A A1161 22.127 -7.965 -15.221 1.00 87.11 C
ATOM 18 C6 A A1161 22.923 -6.824 -15.259 1.00 87.00 C
ATOM 19 N6 A A1161 24.253 -6.885 -15.139 1.00 86.74 N
ATOM 20 N1 A A1161 22.298 -5.632 -15.421 1.00 87.17 N
ATOM 21 C2 A A1161 20.972 -5.596 -15.538 1.00 87.44 C
ATOM 22 N3 A A1161 20.125 -6.610 -15.520 1.00 87.57 N
ATOM 23 C4 A A1161 20.775 -7.772 -15.362 1.00 87.40 C
ATOM 24 P U A1162 18.753 -10.773 -20.168 1.00 99.59 P
ATOM 25 OP1 U A1162 18.022 -11.813 -20.925 1.00100.18 O
ATOM 26 OP2 U A1162 20.179 -10.989 -19.872 1.00 99.19 O
ATOM 27 O5' U A1162 18.563 -9.354 -20.841 1.00 99.96 O
TER
ATOM 1 O3' U B1232 21.749 2.342 -13.827 1.00 97.60 O
ATOM 2 P G B1233 21.453 1.908 -12.315 1.00 83.73 P
ATOM 3 OP1 G B1233 20.828 3.076 -11.647 1.00 83.55 O
ATOM 4 OP2 G B1233 22.727 1.350 -11.756 1.00 83.22 O
ATOM 5 O5' G B1233 20.365 0.759 -12.503 1.00 83.94 O
ATOM 6 C5' G B1233 19.049 1.084 -12.904 1.00 84.38 C
ATOM 7 C4' G B1233 18.142 -0.107 -12.825 1.00 84.45 C
ATOM 8 O4' G B1233 18.646 -1.160 -13.687 1.00 84.77 O
ATOM 9 C3' G B1233 18.030 -0.785 -11.469 1.00 83.76 C
ATOM 10 O3' G B1233 17.173 -0.092 -10.562 1.00 83.48 O
ATOM 11 C2' G B1233 17.513 -2.157 -11.875 1.00 84.01 C
ATOM 12 O2' G B1233 16.149 -2.066 -12.265 1.00 84.46 O
ATOM 13 C1' G B1233 18.341 -2.418 -13.130 1.00 84.50 C
ATOM 14 N9 G B1233 19.609 -3.108 -12.835 1.00 84.13 N
ATOM 15 C8 G B1233 20.830 -2.498 -12.787 1.00 83.92 C
ATOM 16 N7 G B1233 21.819 -3.313 -12.526 1.00 83.61 N
ATOM 17 C5 G B1233 21.224 -4.549 -12.395 1.00 83.63 C
ATOM 18 C6 G B1233 21.803 -5.813 -12.110 1.00 83.39 C
ATOM 19 O6 G B1233 22.972 -6.128 -11.905 1.00 83.11 O
ATOM 20 N1 G B1233 20.854 -6.800 -12.070 1.00 83.52 N
ATOM 21 C2 G B1233 19.524 -6.603 -12.266 1.00 83.83 C
ATOM 22 N2 G B1233 18.802 -7.718 -12.177 1.00 83.92 N
ATOM 23 N3 G B1233 18.954 -5.438 -12.536 1.00 84.06 N
ATOM 24 C4 G B1233 19.857 -4.443 -12.590 1.00 83.95 C
ATOM 25 P A B1234 17.314 -0.291 -8.954 1.00 74.50 P
ATOM 26 OP1 A B1234 16.242 0.518 -8.321 1.00 74.41 O
ATOM 27 OP2 A B1234 18.727 -0.019 -8.579 1.00 74.09 O
ATOM 28 O5' A B1234 16.993 -1.832 -8.761 1.00 74.41 O
TER
ATOM 2 P A A1161 19.805 -14.992 -15.759 1.00 88.03 P
ATOM 3 OP1 A A1161 19.104 -16.137 -16.413 1.00 88.56 O
ATOM 4 OP2 A A1161 21.237 -14.706 -16.117 1.00 87.97 O
ATOM 5 O5' A A1161 18.937 -13.685 -15.903 1.00 88.18 O
ATOM 6 C5' A A1161 19.397 -12.610 -16.673 1.00 88.46 C
ATOM 7 C4' A A1161 18.494 -11.431 -16.530 1.00 88.49 C
ATOM 8 O4' A A1161 18.738 -10.791 -15.247 1.00 87.74 O
ATOM 9 C3' A A1161 18.703 -10.339 -17.563 1.00 88.97 C
ATOM 10 O3' A A1161 17.979 -10.576 -18.768 1.00 89.77 O
ATOM 11 C2' A A1161 18.305 -9.066 -16.808 1.00 88.60 C
ATOM 12 O2' A A1161 16.889 -8.916 -16.738 1.00 88.81 O
ATOM 13 C1' A A1161 18.831 -9.393 -15.411 1.00 87.77 C
ATOM 14 N9 A A1161 20.244 -9.026 -15.285 1.00 87.46 N
ATOM 15 C8 A A1161 21.285 -9.898 -15.125 1.00 87.24 C
ATOM 16 N7 A A1161 22.445 -9.306 -15.071 1.00 87.01 N
ATOM 17 C5 A A1161 22.127 -7.965 -15.221 1.00 87.11 C
ATOM 18 C6 A A1161 22.923 -6.824 -15.259 1.00 87.00 C
ATOM 19 N6 A A1161 24.253 -6.885 -15.139 1.00 86.74 N
ATOM 20 N1 A A1161 22.298 -5.632 -15.421 1.00 87.17 N
ATOM 21 C2 A A1161 20.972 -5.596 -15.538 1.00 87.44 C
ATOM 22 N3 A A1161 20.125 -6.610 -15.520 1.00 87.57 N
ATOM 23 C4 A A1161 20.775 -7.772 -15.362 1.00 87.40 C
ATOM 24 P U A1162 18.753 -10.773 -20.168 1.00 99.59 P
ATOM 25 OP1 U A1162 18.022 -11.813 -20.925 1.00100.18 O
ATOM 26 OP2 U A1162 20.179 -10.989 -19.872 1.00 99.19 O
ATOM 27 O5' U A1162 18.563 -9.354 -20.841 1.00 99.96 O
TER
ATOM 1 O3' U B1232 21.749 2.342 -13.827 1.00 97.60 O
ATOM 2 P G B1233 21.453 1.908 -12.315 1.00 83.73 P
ATOM 3 OP1 G B1233 20.828 3.076 -11.647 1.00 83.55 O
ATOM 4 OP2 G B1233 22.727 1.350 -11.756 1.00 83.22 O
ATOM 5 O5' G B1233 20.365 0.759 -12.503 1.00 83.94 O
ATOM 6 C5' G B1233 19.049 1.084 -12.904 1.00 84.38 C
ATOM 7 C4' G B1233 18.142 -0.107 -12.825 1.00 84.45 C
ATOM 8 O4' G B1233 18.646 -1.160 -13.687 1.00 84.77 O
ATOM 9 C3' G B1233 18.030 -0.785 -11.469 1.00 83.76 C
ATOM 10 O3' G B1233 17.173 -0.092 -10.562 1.00 83.48 O
ATOM 11 C2' G B1233 17.513 -2.157 -11.875 1.00 84.01 C
ATOM 12 O2' G B1233 16.149 -2.066 -12.265 1.00 84.46 O
ATOM 13 C1' G B1233 18.341 -2.418 -13.130 1.00 84.50 C
ATOM 14 N9 G B1233 19.609 -3.108 -12.835 1.00 84.13 N
ATOM 15 C8 G B1233 20.830 -2.498 -12.787 1.00 83.92 C
ATOM 16 N7 G B1233 21.819 -3.313 -12.526 1.00 83.61 N
ATOM 17 C5 G B1233 21.224 -4.549 -12.395 1.00 83.63 C
ATOM 18 C6 G B1233 21.803 -5.813 -12.110 1.00 83.39 C
ATOM 19 O6 G B1233 22.972 -6.128 -11.905 1.00 83.11 O
ATOM 20 N1 G B1233 20.854 -6.800 -12.070 1.00 83.52 N
ATOM 21 C2 G B1233 19.524 -6.603 -12.266 1.00 83.83 C
ATOM 22 N2 G B1233 18.802 -7.718 -12.177 1.00 83.92 N
ATOM 23 N3 G B1233 18.954 -5.438 -12.536 1.00 84.06 N
ATOM 24 C4 G B1233 19.857 -4.443 -12.590 1.00 83.95 C
ATOM 25 P A B1234 17.314 -0.291 -8.954 1.00 74.50 P
ATOM 26 OP1 A B1234 16.242 0.518 -8.321 1.00 74.41 O
ATOM 27 OP2 A B1234 18.727 -0.019 -8.579 1.00 74.09 O
ATOM 28 O5' A B1234 16.993 -1.832 -8.761 1.00 74.41 O
TER
Atoms:
OP1: (19.104,-16.137,-16.413)
OP2: (21.237,-14.706,-16.117)
C3': (18.703,-10.339,-17.563)
C1': (18.831,-9.393,-15.411)
C5': (19.397,-12.610,-16.673)
O4': (18.738,-10.791,-15.247)
C8: (21.285,-9.898,-15.125)
O2': (16.889,-8.916,-16.738)
C6: (22.923,-6.824,-15.259)
C5: (22.127,-7.965,-15.221)
C4: (20.775,-7.772,-15.362)
P: (19.805,-14.992,-15.759)
C4': (18.494,-11.431,-16.530)
C2': (18.305,-9.066,-16.808)
C2: (20.972,-5.596,-15.538)
N1: (22.298,-5.632,-15.421)
N3: (20.125,-6.610,-15.520)
N6: (24.253,-6.885,-15.139)
N7: (22.445,-9.306,-15.071)
N9: (20.244,-9.026,-15.285)
O5': (18.937,-13.685,-15.903)
O3': (17.979,-10.576,-18.768)
OP2: (21.237,-14.706,-16.117)
C3': (18.703,-10.339,-17.563)
C1': (18.831,-9.393,-15.411)
C5': (19.397,-12.610,-16.673)
O4': (18.738,-10.791,-15.247)
C8: (21.285,-9.898,-15.125)
O2': (16.889,-8.916,-16.738)
C6: (22.923,-6.824,-15.259)
C5: (22.127,-7.965,-15.221)
C4: (20.775,-7.772,-15.362)
P: (19.805,-14.992,-15.759)
C4': (18.494,-11.431,-16.530)
C2': (18.305,-9.066,-16.808)
C2: (20.972,-5.596,-15.538)
N1: (22.298,-5.632,-15.421)
N3: (20.125,-6.610,-15.520)
N6: (24.253,-6.885,-15.139)
N7: (22.445,-9.306,-15.071)
N9: (20.244,-9.026,-15.285)
O5': (18.937,-13.685,-15.903)
O3': (17.979,-10.576,-18.768)
OP1: (20.828,3.076,-11.647)
OP2: (22.727,1.350,-11.756)
C3': (18.030,-0.785,-11.469)
C1': (18.341,-2.418,-13.130)
C5': (19.049,1.084,-12.904)
O6: (22.972,-6.128,-11.905)
O4': (18.646,-1.160,-13.687)
C8: (20.830,-2.498,-12.787)
C2: (19.524,-6.603,-12.266)
C6: (21.803,-5.813,-12.110)
C5: (21.224,-4.549,-12.395)
C4: (19.857,-4.443,-12.590)
P: (21.453,1.908,-12.315)
C4': (18.142,-0.107,-12.825)
C2': (17.513,-2.157,-11.875)
O2': (16.149,-2.066,-12.265)
N1: (20.854,-6.800,-12.070)
N2: (18.802,-7.718,-12.177)
N3: (18.954,-5.438,-12.536)
N7: (21.819,-3.313,-12.526)
N9: (19.609,-3.108,-12.835)
O5': (20.365,0.759,-12.503)
O3': (17.173,-0.092,-10.562)
OP2: (22.727,1.350,-11.756)
C3': (18.030,-0.785,-11.469)
C1': (18.341,-2.418,-13.130)
C5': (19.049,1.084,-12.904)
O6: (22.972,-6.128,-11.905)
O4': (18.646,-1.160,-13.687)
C8: (20.830,-2.498,-12.787)
C2: (19.524,-6.603,-12.266)
C6: (21.803,-5.813,-12.110)
C5: (21.224,-4.549,-12.395)
C4: (19.857,-4.443,-12.590)
P: (21.453,1.908,-12.315)
C4': (18.142,-0.107,-12.825)
C2': (17.513,-2.157,-11.875)
O2': (16.149,-2.066,-12.265)
N1: (20.854,-6.800,-12.070)
N2: (18.802,-7.718,-12.177)
N3: (18.954,-5.438,-12.536)
N7: (21.819,-3.313,-12.526)
N9: (19.609,-3.108,-12.835)
O5': (20.365,0.759,-12.503)
O3': (17.173,-0.092,-10.562)
Image (generated by PyMOL):