Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKI:B43:B53
Extra
PDB:
ATOM 1 O3' C A 42 12.612 10.654 -2.518 1.00 54.78 O
ATOM 2 P A A 43 12.585 10.572 -4.116 1.00 51.82 P
ATOM 3 OP1 A A 43 13.627 11.500 -4.615 1.00 52.58 O
ATOM 4 OP2 A A 43 11.184 10.727 -4.577 1.00 50.05 O
ATOM 5 O5' A A 43 13.024 9.060 -4.410 1.00 50.28 O
ATOM 6 C5' A A 43 14.301 8.590 -3.994 1.00 50.65 C
ATOM 7 C4' A A 43 14.330 7.076 -3.907 1.00 49.40 C
ATOM 8 O4' A A 43 13.280 6.595 -3.031 1.00 49.08 O
ATOM 9 C3' A A 43 14.046 6.318 -5.194 1.00 46.92 C
ATOM 10 O3' A A 43 15.147 6.386 -6.110 1.00 46.44 O
ATOM 11 C2' A A 43 13.823 4.923 -4.614 1.00 46.67 C
ATOM 12 O2' A A 43 15.023 4.292 -4.205 1.00 47.66 O
ATOM 13 C1' A A 43 12.976 5.252 -3.381 1.00 47.74 C
ATOM 14 N9 A A 43 11.535 5.100 -3.616 1.00 46.17 N
ATOM 15 C8 A A 43 10.587 6.087 -3.671 1.00 45.55 C
ATOM 16 N7 A A 43 9.370 5.648 -3.908 1.00 44.15 N
ATOM 17 C5 A A 43 9.527 4.276 -4.020 1.00 43.89 C
ATOM 18 C6 A A 43 8.615 3.223 -4.270 1.00 42.90 C
ATOM 19 N6 A A 43 7.305 3.407 -4.459 1.00 41.06 N
ATOM 20 N1 A A 43 9.103 1.963 -4.316 1.00 43.15 N
ATOM 21 C2 A A 43 10.417 1.768 -4.131 1.00 44.38 C
ATOM 22 N3 A A 43 11.367 2.672 -3.885 1.00 45.24 N
ATOM 23 C4 A A 43 10.855 3.920 -3.842 1.00 45.29 C
ATOM 24 P A A 44 14.887 6.441 -7.695 1.00 43.70 P
ATOM 25 OP1 A A 44 16.109 6.963 -8.348 1.00 44.02 O
ATOM 26 OP2 A A 44 13.593 7.124 -7.939 1.00 42.84 O
ATOM 27 O5' A A 44 14.712 4.894 -8.075 1.00 42.24 O
TER
ATOM 1 O3' U B 52 7.554 -5.829 -2.134 1.00 55.75 O
ATOM 2 P G B 53 7.426 -5.362 -0.605 1.00 57.33 P
ATOM 3 OP1 G B 53 7.649 -6.550 0.251 1.00 59.54 O
ATOM 4 OP2 G B 53 6.176 -4.581 -0.453 1.00 55.96 O
ATOM 5 O5' G B 53 8.659 -4.349 -0.449 1.00 57.60 O
ATOM 6 C5' G B 53 9.991 -4.853 -0.357 1.00 58.88 C
ATOM 7 C4' G B 53 11.017 -3.734 -0.308 1.00 58.86 C
ATOM 8 O4' G B 53 10.853 -2.833 -1.435 1.00 56.39 O
ATOM 9 C3' G B 53 10.931 -2.807 0.894 1.00 59.85 C
ATOM 10 O3' G B 53 11.474 -3.419 2.059 1.00 62.20 O
ATOM 11 C2' G B 53 11.766 -1.633 0.391 1.00 59.09 C
ATOM 12 O2' G B 53 13.162 -1.870 0.428 1.00 60.50 O
ATOM 13 C1' G B 53 11.270 -1.528 -1.055 1.00 56.59 C
ATOM 14 N9 G B 53 10.143 -0.600 -1.183 1.00 55.29 N
ATOM 15 C8 G B 53 8.847 -0.911 -1.523 1.00 53.96 C
ATOM 16 N7 G B 53 8.049 0.118 -1.542 1.00 53.12 N
ATOM 17 C5 G B 53 8.860 1.186 -1.181 1.00 54.05 C
ATOM 18 C6 G B 53 8.550 2.564 -1.033 1.00 53.84 C
ATOM 19 O6 G B 53 7.457 3.125 -1.197 1.00 52.51 O
ATOM 20 N1 G B 53 9.667 3.316 -0.657 1.00 55.31 N
ATOM 21 C2 G B 53 10.927 2.799 -0.449 1.00 56.86 C
ATOM 22 N2 G B 53 11.880 3.671 -0.091 1.00 58.59 N
ATOM 23 N3 G B 53 11.231 1.512 -0.586 1.00 56.95 N
ATOM 24 C4 G B 53 10.154 0.762 -0.954 1.00 55.37 C
ATOM 25 P G B 54 10.811 -3.145 3.496 1.00 64.04 P
ATOM 26 OP1 G B 54 11.444 -4.067 4.465 1.00 67.20 O
ATOM 27 OP2 G B 54 9.336 -3.152 3.341 1.00 62.48 O
ATOM 28 O5' G B 54 11.267 -1.639 3.811 1.00 64.29 O
TER
ATOM 2 P A A 43 12.585 10.572 -4.116 1.00 51.82 P
ATOM 3 OP1 A A 43 13.627 11.500 -4.615 1.00 52.58 O
ATOM 4 OP2 A A 43 11.184 10.727 -4.577 1.00 50.05 O
ATOM 5 O5' A A 43 13.024 9.060 -4.410 1.00 50.28 O
ATOM 6 C5' A A 43 14.301 8.590 -3.994 1.00 50.65 C
ATOM 7 C4' A A 43 14.330 7.076 -3.907 1.00 49.40 C
ATOM 8 O4' A A 43 13.280 6.595 -3.031 1.00 49.08 O
ATOM 9 C3' A A 43 14.046 6.318 -5.194 1.00 46.92 C
ATOM 10 O3' A A 43 15.147 6.386 -6.110 1.00 46.44 O
ATOM 11 C2' A A 43 13.823 4.923 -4.614 1.00 46.67 C
ATOM 12 O2' A A 43 15.023 4.292 -4.205 1.00 47.66 O
ATOM 13 C1' A A 43 12.976 5.252 -3.381 1.00 47.74 C
ATOM 14 N9 A A 43 11.535 5.100 -3.616 1.00 46.17 N
ATOM 15 C8 A A 43 10.587 6.087 -3.671 1.00 45.55 C
ATOM 16 N7 A A 43 9.370 5.648 -3.908 1.00 44.15 N
ATOM 17 C5 A A 43 9.527 4.276 -4.020 1.00 43.89 C
ATOM 18 C6 A A 43 8.615 3.223 -4.270 1.00 42.90 C
ATOM 19 N6 A A 43 7.305 3.407 -4.459 1.00 41.06 N
ATOM 20 N1 A A 43 9.103 1.963 -4.316 1.00 43.15 N
ATOM 21 C2 A A 43 10.417 1.768 -4.131 1.00 44.38 C
ATOM 22 N3 A A 43 11.367 2.672 -3.885 1.00 45.24 N
ATOM 23 C4 A A 43 10.855 3.920 -3.842 1.00 45.29 C
ATOM 24 P A A 44 14.887 6.441 -7.695 1.00 43.70 P
ATOM 25 OP1 A A 44 16.109 6.963 -8.348 1.00 44.02 O
ATOM 26 OP2 A A 44 13.593 7.124 -7.939 1.00 42.84 O
ATOM 27 O5' A A 44 14.712 4.894 -8.075 1.00 42.24 O
TER
ATOM 1 O3' U B 52 7.554 -5.829 -2.134 1.00 55.75 O
ATOM 2 P G B 53 7.426 -5.362 -0.605 1.00 57.33 P
ATOM 3 OP1 G B 53 7.649 -6.550 0.251 1.00 59.54 O
ATOM 4 OP2 G B 53 6.176 -4.581 -0.453 1.00 55.96 O
ATOM 5 O5' G B 53 8.659 -4.349 -0.449 1.00 57.60 O
ATOM 6 C5' G B 53 9.991 -4.853 -0.357 1.00 58.88 C
ATOM 7 C4' G B 53 11.017 -3.734 -0.308 1.00 58.86 C
ATOM 8 O4' G B 53 10.853 -2.833 -1.435 1.00 56.39 O
ATOM 9 C3' G B 53 10.931 -2.807 0.894 1.00 59.85 C
ATOM 10 O3' G B 53 11.474 -3.419 2.059 1.00 62.20 O
ATOM 11 C2' G B 53 11.766 -1.633 0.391 1.00 59.09 C
ATOM 12 O2' G B 53 13.162 -1.870 0.428 1.00 60.50 O
ATOM 13 C1' G B 53 11.270 -1.528 -1.055 1.00 56.59 C
ATOM 14 N9 G B 53 10.143 -0.600 -1.183 1.00 55.29 N
ATOM 15 C8 G B 53 8.847 -0.911 -1.523 1.00 53.96 C
ATOM 16 N7 G B 53 8.049 0.118 -1.542 1.00 53.12 N
ATOM 17 C5 G B 53 8.860 1.186 -1.181 1.00 54.05 C
ATOM 18 C6 G B 53 8.550 2.564 -1.033 1.00 53.84 C
ATOM 19 O6 G B 53 7.457 3.125 -1.197 1.00 52.51 O
ATOM 20 N1 G B 53 9.667 3.316 -0.657 1.00 55.31 N
ATOM 21 C2 G B 53 10.927 2.799 -0.449 1.00 56.86 C
ATOM 22 N2 G B 53 11.880 3.671 -0.091 1.00 58.59 N
ATOM 23 N3 G B 53 11.231 1.512 -0.586 1.00 56.95 N
ATOM 24 C4 G B 53 10.154 0.762 -0.954 1.00 55.37 C
ATOM 25 P G B 54 10.811 -3.145 3.496 1.00 64.04 P
ATOM 26 OP1 G B 54 11.444 -4.067 4.465 1.00 67.20 O
ATOM 27 OP2 G B 54 9.336 -3.152 3.341 1.00 62.48 O
ATOM 28 O5' G B 54 11.267 -1.639 3.811 1.00 64.29 O
TER
Atoms:
OP1: (13.627,11.500,-4.615)
OP2: (11.184,10.727,-4.577)
C3': (14.046,6.318,-5.194)
C1': (12.976,5.252,-3.381)
C5': (14.301,8.590,-3.994)
O4': (13.280,6.595,-3.031)
C8: (10.587,6.087,-3.671)
O2': (15.023,4.292,-4.205)
C6: (8.615,3.223,-4.270)
C5: (9.527,4.276,-4.020)
C4: (10.855,3.920,-3.842)
P: (12.585,10.572,-4.116)
C4': (14.330,7.076,-3.907)
C2': (13.823,4.923,-4.614)
C2: (10.417,1.768,-4.131)
N1: (9.103,1.963,-4.316)
N3: (11.367,2.672,-3.885)
N6: (7.305,3.407,-4.459)
N7: (9.370,5.648,-3.908)
N9: (11.535,5.100,-3.616)
O5': (13.024,9.060,-4.410)
O3': (15.147,6.386,-6.110)
OP2: (11.184,10.727,-4.577)
C3': (14.046,6.318,-5.194)
C1': (12.976,5.252,-3.381)
C5': (14.301,8.590,-3.994)
O4': (13.280,6.595,-3.031)
C8: (10.587,6.087,-3.671)
O2': (15.023,4.292,-4.205)
C6: (8.615,3.223,-4.270)
C5: (9.527,4.276,-4.020)
C4: (10.855,3.920,-3.842)
P: (12.585,10.572,-4.116)
C4': (14.330,7.076,-3.907)
C2': (13.823,4.923,-4.614)
C2: (10.417,1.768,-4.131)
N1: (9.103,1.963,-4.316)
N3: (11.367,2.672,-3.885)
N6: (7.305,3.407,-4.459)
N7: (9.370,5.648,-3.908)
N9: (11.535,5.100,-3.616)
O5': (13.024,9.060,-4.410)
O3': (15.147,6.386,-6.110)
OP1: (7.649,-6.550,0.251)
OP2: (6.176,-4.581,-0.453)
C3': (10.931,-2.807,0.894)
C1': (11.270,-1.528,-1.055)
C5': (9.991,-4.853,-0.357)
O6: (7.457,3.125,-1.197)
O4': (10.853,-2.833,-1.435)
C8: (8.847,-0.911,-1.523)
C2: (10.927,2.799,-0.449)
C6: (8.550,2.564,-1.033)
C5: (8.860,1.186,-1.181)
C4: (10.154,0.762,-0.954)
P: (7.426,-5.362,-0.605)
C4': (11.017,-3.734,-0.308)
C2': (11.766,-1.633,0.391)
O2': (13.162,-1.870,0.428)
N1: (9.667,3.316,-0.657)
N2: (11.880,3.671,-0.091)
N3: (11.231,1.512,-0.586)
N7: (8.049,0.118,-1.542)
N9: (10.143,-0.600,-1.183)
O5': (8.659,-4.349,-0.449)
O3': (11.474,-3.419,2.059)
OP2: (6.176,-4.581,-0.453)
C3': (10.931,-2.807,0.894)
C1': (11.270,-1.528,-1.055)
C5': (9.991,-4.853,-0.357)
O6: (7.457,3.125,-1.197)
O4': (10.853,-2.833,-1.435)
C8: (8.847,-0.911,-1.523)
C2: (10.927,2.799,-0.449)
C6: (8.550,2.564,-1.033)
C5: (8.860,1.186,-1.181)
C4: (10.154,0.762,-0.954)
P: (7.426,-5.362,-0.605)
C4': (11.017,-3.734,-0.308)
C2': (11.766,-1.633,0.391)
O2': (13.162,-1.870,0.428)
N1: (9.667,3.316,-0.657)
N2: (11.880,3.671,-0.091)
N3: (11.231,1.512,-0.586)
N7: (8.049,0.118,-1.542)
N9: (10.143,-0.600,-1.183)
O5': (8.659,-4.349,-0.449)
O3': (11.474,-3.419,2.059)
Image (generated by PyMOL):