Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:C40:C20
Extra
PDB:
ATOM 1 O3' U A 39 102.522 106.632 6.630 1.00 71.76 O
ATOM 2 P G A 40 104.092 106.410 6.862 1.00 74.54 P
ATOM 3 OP1 G A 40 104.666 105.804 5.630 1.00 73.70 O
ATOM 4 OP2 G A 40 104.252 105.711 8.169 1.00 74.99 O
ATOM 5 O5' G A 40 104.652 107.886 7.063 1.00 74.27 O
ATOM 6 C5' G A 40 105.737 108.123 7.938 1.00 75.09 C
ATOM 7 C4' G A 40 105.417 109.257 8.872 1.00 76.19 C
ATOM 8 O4' G A 40 104.140 109.025 9.530 1.00 75.43 O
ATOM 9 C3' G A 40 106.392 109.353 10.025 1.00 77.64 C
ATOM 10 O3' G A 40 107.596 109.981 9.638 1.00 80.01 O
ATOM 11 C2' G A 40 105.584 110.100 11.068 1.00 76.61 C
ATOM 12 O2' G A 40 105.479 111.483 10.785 1.00 77.81 O
ATOM 13 C1' G A 40 104.228 109.416 10.899 1.00 74.92 C
ATOM 14 N9 G A 40 104.111 108.216 11.726 1.00 72.43 N
ATOM 15 C8 G A 40 103.909 106.927 11.291 1.00 72.13 C
ATOM 16 N7 G A 40 103.814 106.064 12.266 1.00 70.94 N
ATOM 17 C5 G A 40 103.970 106.826 13.415 1.00 70.77 C
ATOM 18 C6 G A 40 103.956 106.440 14.782 1.00 70.46 C
ATOM 19 O6 G A 40 103.775 105.314 15.262 1.00 70.21 O
ATOM 20 N1 G A 40 104.170 107.528 15.624 1.00 69.51 N
ATOM 21 C2 G A 40 104.358 108.821 15.205 1.00 70.00 C
ATOM 22 N2 G A 40 104.527 109.735 16.168 1.00 69.90 N
ATOM 23 N3 G A 40 104.371 109.194 13.934 1.00 70.69 N
ATOM 24 C4 G A 40 104.169 108.153 13.099 1.00 71.12 C
ATOM 25 P C A 41 108.980 109.211 9.888 1.00 82.80 P
ATOM 26 OP1 C A 41 109.997 109.775 8.960 1.00 82.20 O
ATOM 27 OP2 C A 41 108.687 107.750 9.869 1.00 82.17 O
ATOM 28 O5' C A 41 109.347 109.579 11.396 1.00 81.19 O
TER
ATOM 1 O3' A B 19 105.842 93.789 16.549 1.00 67.04 O
ATOM 2 P G B 20 104.767 94.969 16.749 1.00 65.96 P
ATOM 3 OP1 G B 20 105.368 96.048 17.577 1.00 66.12 O
ATOM 4 OP2 G B 20 103.509 94.325 17.194 1.00 66.34 O
ATOM 5 O5' G B 20 104.556 95.554 15.285 1.00 65.61 O
ATOM 6 C5' G B 20 104.001 94.753 14.244 1.00 63.79 C
ATOM 7 C4' G B 20 103.613 95.634 13.087 1.00 62.58 C
ATOM 8 O4' G B 20 102.600 96.558 13.550 1.00 61.78 O
ATOM 9 C3' G B 20 104.741 96.504 12.555 1.00 62.45 C
ATOM 10 O3' G B 20 105.436 95.782 11.531 1.00 62.78 O
ATOM 11 C2' G B 20 103.994 97.723 12.010 1.00 62.12 C
ATOM 12 O2' G B 20 103.482 97.503 10.708 1.00 61.21 O
ATOM 13 C1' G B 20 102.814 97.834 12.983 1.00 60.95 C
ATOM 14 N9 G B 20 102.901 98.798 14.079 1.00 59.61 N
ATOM 15 C8 G B 20 102.792 98.511 15.420 1.00 59.07 C
ATOM 16 N7 G B 20 102.867 99.570 16.184 1.00 58.26 N
ATOM 17 C5 G B 20 103.043 100.622 15.299 1.00 58.81 C
ATOM 18 C6 G B 20 103.184 102.016 15.548 1.00 58.64 C
ATOM 19 O6 G B 20 103.192 102.607 16.637 1.00 58.23 O
ATOM 20 N1 G B 20 103.330 102.737 14.365 1.00 58.68 N
ATOM 21 C2 G B 20 103.350 102.187 13.102 1.00 60.13 C
ATOM 22 N2 G B 20 103.501 103.059 12.083 1.00 60.53 N
ATOM 23 N3 G B 20 103.229 100.880 12.854 1.00 59.46 N
ATOM 24 C4 G B 20 103.075 100.165 13.991 1.00 59.40 C
ATOM 25 P C B 21 107.047 95.738 11.521 1.00 63.34 P
ATOM 26 OP1 C B 21 107.448 94.855 10.387 1.00 61.61 O
ATOM 27 OP2 C B 21 107.533 95.421 12.882 1.00 64.82 O
ATOM 28 O5' C B 21 107.457 97.250 11.215 1.00 61.60 O
TER
ATOM 2 P G A 40 104.092 106.410 6.862 1.00 74.54 P
ATOM 3 OP1 G A 40 104.666 105.804 5.630 1.00 73.70 O
ATOM 4 OP2 G A 40 104.252 105.711 8.169 1.00 74.99 O
ATOM 5 O5' G A 40 104.652 107.886 7.063 1.00 74.27 O
ATOM 6 C5' G A 40 105.737 108.123 7.938 1.00 75.09 C
ATOM 7 C4' G A 40 105.417 109.257 8.872 1.00 76.19 C
ATOM 8 O4' G A 40 104.140 109.025 9.530 1.00 75.43 O
ATOM 9 C3' G A 40 106.392 109.353 10.025 1.00 77.64 C
ATOM 10 O3' G A 40 107.596 109.981 9.638 1.00 80.01 O
ATOM 11 C2' G A 40 105.584 110.100 11.068 1.00 76.61 C
ATOM 12 O2' G A 40 105.479 111.483 10.785 1.00 77.81 O
ATOM 13 C1' G A 40 104.228 109.416 10.899 1.00 74.92 C
ATOM 14 N9 G A 40 104.111 108.216 11.726 1.00 72.43 N
ATOM 15 C8 G A 40 103.909 106.927 11.291 1.00 72.13 C
ATOM 16 N7 G A 40 103.814 106.064 12.266 1.00 70.94 N
ATOM 17 C5 G A 40 103.970 106.826 13.415 1.00 70.77 C
ATOM 18 C6 G A 40 103.956 106.440 14.782 1.00 70.46 C
ATOM 19 O6 G A 40 103.775 105.314 15.262 1.00 70.21 O
ATOM 20 N1 G A 40 104.170 107.528 15.624 1.00 69.51 N
ATOM 21 C2 G A 40 104.358 108.821 15.205 1.00 70.00 C
ATOM 22 N2 G A 40 104.527 109.735 16.168 1.00 69.90 N
ATOM 23 N3 G A 40 104.371 109.194 13.934 1.00 70.69 N
ATOM 24 C4 G A 40 104.169 108.153 13.099 1.00 71.12 C
ATOM 25 P C A 41 108.980 109.211 9.888 1.00 82.80 P
ATOM 26 OP1 C A 41 109.997 109.775 8.960 1.00 82.20 O
ATOM 27 OP2 C A 41 108.687 107.750 9.869 1.00 82.17 O
ATOM 28 O5' C A 41 109.347 109.579 11.396 1.00 81.19 O
TER
ATOM 1 O3' A B 19 105.842 93.789 16.549 1.00 67.04 O
ATOM 2 P G B 20 104.767 94.969 16.749 1.00 65.96 P
ATOM 3 OP1 G B 20 105.368 96.048 17.577 1.00 66.12 O
ATOM 4 OP2 G B 20 103.509 94.325 17.194 1.00 66.34 O
ATOM 5 O5' G B 20 104.556 95.554 15.285 1.00 65.61 O
ATOM 6 C5' G B 20 104.001 94.753 14.244 1.00 63.79 C
ATOM 7 C4' G B 20 103.613 95.634 13.087 1.00 62.58 C
ATOM 8 O4' G B 20 102.600 96.558 13.550 1.00 61.78 O
ATOM 9 C3' G B 20 104.741 96.504 12.555 1.00 62.45 C
ATOM 10 O3' G B 20 105.436 95.782 11.531 1.00 62.78 O
ATOM 11 C2' G B 20 103.994 97.723 12.010 1.00 62.12 C
ATOM 12 O2' G B 20 103.482 97.503 10.708 1.00 61.21 O
ATOM 13 C1' G B 20 102.814 97.834 12.983 1.00 60.95 C
ATOM 14 N9 G B 20 102.901 98.798 14.079 1.00 59.61 N
ATOM 15 C8 G B 20 102.792 98.511 15.420 1.00 59.07 C
ATOM 16 N7 G B 20 102.867 99.570 16.184 1.00 58.26 N
ATOM 17 C5 G B 20 103.043 100.622 15.299 1.00 58.81 C
ATOM 18 C6 G B 20 103.184 102.016 15.548 1.00 58.64 C
ATOM 19 O6 G B 20 103.192 102.607 16.637 1.00 58.23 O
ATOM 20 N1 G B 20 103.330 102.737 14.365 1.00 58.68 N
ATOM 21 C2 G B 20 103.350 102.187 13.102 1.00 60.13 C
ATOM 22 N2 G B 20 103.501 103.059 12.083 1.00 60.53 N
ATOM 23 N3 G B 20 103.229 100.880 12.854 1.00 59.46 N
ATOM 24 C4 G B 20 103.075 100.165 13.991 1.00 59.40 C
ATOM 25 P C B 21 107.047 95.738 11.521 1.00 63.34 P
ATOM 26 OP1 C B 21 107.448 94.855 10.387 1.00 61.61 O
ATOM 27 OP2 C B 21 107.533 95.421 12.882 1.00 64.82 O
ATOM 28 O5' C B 21 107.457 97.250 11.215 1.00 61.60 O
TER
Atoms:
OP1: (104.666,105.804,5.630)
OP2: (104.252,105.711,8.169)
C3': (106.392,109.353,10.025)
C1': (104.228,109.416,10.899)
C5': (105.737,108.123,7.938)
O6: (103.775,105.314,15.262)
O4': (104.140,109.025,9.530)
C8: (103.909,106.927,11.291)
C2: (104.358,108.821,15.205)
C6: (103.956,106.440,14.782)
C5: (103.970,106.826,13.415)
C4: (104.169,108.153,13.099)
P: (104.092,106.410,6.862)
C4': (105.417,109.257,8.872)
C2': (105.584,110.100,11.068)
O2': (105.479,111.483,10.785)
N1: (104.170,107.528,15.624)
N2: (104.527,109.735,16.168)
N3: (104.371,109.194,13.934)
N7: (103.814,106.064,12.266)
N9: (104.111,108.216,11.726)
O5': (104.652,107.886,7.063)
O3': (107.596,109.981,9.638)
OP2: (104.252,105.711,8.169)
C3': (106.392,109.353,10.025)
C1': (104.228,109.416,10.899)
C5': (105.737,108.123,7.938)
O6: (103.775,105.314,15.262)
O4': (104.140,109.025,9.530)
C8: (103.909,106.927,11.291)
C2: (104.358,108.821,15.205)
C6: (103.956,106.440,14.782)
C5: (103.970,106.826,13.415)
C4: (104.169,108.153,13.099)
P: (104.092,106.410,6.862)
C4': (105.417,109.257,8.872)
C2': (105.584,110.100,11.068)
O2': (105.479,111.483,10.785)
N1: (104.170,107.528,15.624)
N2: (104.527,109.735,16.168)
N3: (104.371,109.194,13.934)
N7: (103.814,106.064,12.266)
N9: (104.111,108.216,11.726)
O5': (104.652,107.886,7.063)
O3': (107.596,109.981,9.638)
OP1: (105.368,96.048,17.577)
OP2: (103.509,94.325,17.194)
C3': (104.741,96.504,12.555)
C1': (102.814,97.834,12.983)
C5': (104.001,94.753,14.244)
O6: (103.192,102.607,16.637)
O4': (102.600,96.558,13.550)
C8: (102.792,98.511,15.420)
C2: (103.350,102.187,13.102)
C6: (103.184,102.016,15.548)
C5: (103.043,100.622,15.299)
C4: (103.075,100.165,13.991)
P: (104.767,94.969,16.749)
C4': (103.613,95.634,13.087)
C2': (103.994,97.723,12.010)
O2': (103.482,97.503,10.708)
N1: (103.330,102.737,14.365)
N2: (103.501,103.059,12.083)
N3: (103.229,100.880,12.854)
N7: (102.867,99.570,16.184)
N9: (102.901,98.798,14.079)
O5': (104.556,95.554,15.285)
O3': (105.436,95.782,11.531)
OP2: (103.509,94.325,17.194)
C3': (104.741,96.504,12.555)
C1': (102.814,97.834,12.983)
C5': (104.001,94.753,14.244)
O6: (103.192,102.607,16.637)
O4': (102.600,96.558,13.550)
C8: (102.792,98.511,15.420)
C2: (103.350,102.187,13.102)
C6: (103.184,102.016,15.548)
C5: (103.043,100.622,15.299)
C4: (103.075,100.165,13.991)
P: (104.767,94.969,16.749)
C4': (103.613,95.634,13.087)
C2': (103.994,97.723,12.010)
O2': (103.482,97.503,10.708)
N1: (103.330,102.737,14.365)
N2: (103.501,103.059,12.083)
N3: (103.229,100.880,12.854)
N7: (102.867,99.570,16.184)
N9: (102.901,98.798,14.079)
O5': (104.556,95.554,15.285)
O3': (105.436,95.782,11.531)
Image (generated by PyMOL):