Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:D40:D20
Extra
PDB:
ATOM 1 O3' U A 39 113.967 68.325 -1.501 1.00 74.09 O
ATOM 2 P G A 40 114.162 66.731 -1.502 1.00 78.51 P
ATOM 3 OP1 G A 40 112.988 66.098 -0.846 1.00 79.14 O
ATOM 4 OP2 G A 40 115.531 66.429 -0.995 1.00 77.70 O
ATOM 5 O5' G A 40 114.113 66.369 -3.052 1.00 78.85 O
ATOM 6 C5' G A 40 114.751 65.204 -3.542 1.00 80.29 C
ATOM 7 C4' G A 40 115.023 65.340 -5.017 1.00 81.34 C
ATOM 8 O4' G A 40 115.704 66.597 -5.276 1.00 81.27 O
ATOM 9 C3' G A 40 115.967 64.280 -5.546 1.00 82.70 C
ATOM 10 O3' G A 40 115.271 63.092 -5.882 1.00 84.53 O
ATOM 11 C2' G A 40 116.585 64.973 -6.743 1.00 82.54 C
ATOM 12 O2' G A 40 115.694 65.004 -7.839 1.00 83.69 O
ATOM 13 C1' G A 40 116.771 66.384 -6.185 1.00 82.15 C
ATOM 14 N9 G A 40 118.027 66.566 -5.456 1.00 82.52 N
ATOM 15 C8 G A 40 118.174 66.753 -4.101 1.00 82.18 C
ATOM 16 N7 G A 40 119.416 66.921 -3.736 1.00 81.71 N
ATOM 17 C5 G A 40 120.138 66.833 -4.918 1.00 82.05 C
ATOM 18 C6 G A 40 121.537 66.944 -5.153 1.00 82.34 C
ATOM 19 O6 G A 40 122.444 67.163 -4.337 1.00 81.52 O
ATOM 20 N1 G A 40 121.841 66.780 -6.500 1.00 82.53 N
ATOM 21 C2 G A 40 120.922 66.548 -7.493 1.00 82.93 C
ATOM 22 N2 G A 40 121.411 66.414 -8.725 1.00 84.07 N
ATOM 23 N3 G A 40 119.619 66.453 -7.292 1.00 82.62 N
ATOM 24 C4 G A 40 119.298 66.603 -5.990 1.00 82.52 C
ATOM 25 P C A 41 115.923 61.670 -5.506 1.00 86.90 P
ATOM 26 OP1 C A 41 114.943 60.601 -5.855 1.00 86.05 O
ATOM 27 OP2 C A 41 116.443 61.766 -4.109 1.00 86.27 O
ATOM 28 O5' C A 41 117.179 61.568 -6.486 1.00 84.65 O
TER
ATOM 1 O3' A B 19 128.315 64.783 5.649 1.00 49.76 O
ATOM 2 P G B 20 127.863 65.880 4.559 1.00 52.14 P
ATOM 3 OP1 G B 20 128.223 65.374 3.202 1.00 51.80 O
ATOM 4 OP2 G B 20 128.373 67.200 5.011 1.00 53.75 O
ATOM 5 O5' G B 20 126.269 65.922 4.652 1.00 52.19 O
ATOM 6 C5' G B 20 125.599 66.369 5.831 1.00 51.21 C
ATOM 7 C4' G B 20 124.199 66.821 5.491 1.00 50.20 C
ATOM 8 O4' G B 20 124.288 67.950 4.592 1.00 51.03 O
ATOM 9 C3' G B 20 123.351 65.797 4.759 1.00 50.92 C
ATOM 10 O3' G B 20 122.645 65.030 5.716 1.00 52.26 O
ATOM 11 C2' G B 20 122.395 66.669 3.956 1.00 50.66 C
ATOM 12 O2' G B 20 121.316 67.130 4.737 1.00 51.04 O
ATOM 13 C1' G B 20 123.288 67.857 3.591 1.00 50.30 C
ATOM 14 N9 G B 20 123.968 67.767 2.301 1.00 49.66 N
ATOM 15 C8 G B 20 125.327 67.826 2.095 1.00 49.46 C
ATOM 16 N7 G B 20 125.662 67.712 0.840 1.00 49.56 N
ATOM 17 C5 G B 20 124.453 67.571 0.176 1.00 49.17 C
ATOM 18 C6 G B 20 124.188 67.403 -1.197 1.00 48.67 C
ATOM 19 O6 G B 20 124.996 67.355 -2.127 1.00 49.90 O
ATOM 20 N1 G B 20 122.824 67.290 -1.448 1.00 48.20 N
ATOM 21 C2 G B 20 121.842 67.351 -0.486 1.00 49.28 C
ATOM 22 N2 G B 20 120.576 67.239 -0.912 1.00 49.15 N
ATOM 23 N3 G B 20 122.082 67.514 0.805 1.00 49.33 N
ATOM 24 C4 G B 20 123.398 67.610 1.064 1.00 48.88 C
ATOM 25 P C B 21 122.950 63.467 5.871 1.00 53.45 P
ATOM 26 OP1 C B 21 122.728 63.090 7.298 1.00 54.28 O
ATOM 27 OP2 C B 21 124.256 63.181 5.239 1.00 55.24 O
ATOM 28 O5' C B 21 121.840 62.793 4.959 1.00 53.38 O
TER
ATOM 2 P G A 40 114.162 66.731 -1.502 1.00 78.51 P
ATOM 3 OP1 G A 40 112.988 66.098 -0.846 1.00 79.14 O
ATOM 4 OP2 G A 40 115.531 66.429 -0.995 1.00 77.70 O
ATOM 5 O5' G A 40 114.113 66.369 -3.052 1.00 78.85 O
ATOM 6 C5' G A 40 114.751 65.204 -3.542 1.00 80.29 C
ATOM 7 C4' G A 40 115.023 65.340 -5.017 1.00 81.34 C
ATOM 8 O4' G A 40 115.704 66.597 -5.276 1.00 81.27 O
ATOM 9 C3' G A 40 115.967 64.280 -5.546 1.00 82.70 C
ATOM 10 O3' G A 40 115.271 63.092 -5.882 1.00 84.53 O
ATOM 11 C2' G A 40 116.585 64.973 -6.743 1.00 82.54 C
ATOM 12 O2' G A 40 115.694 65.004 -7.839 1.00 83.69 O
ATOM 13 C1' G A 40 116.771 66.384 -6.185 1.00 82.15 C
ATOM 14 N9 G A 40 118.027 66.566 -5.456 1.00 82.52 N
ATOM 15 C8 G A 40 118.174 66.753 -4.101 1.00 82.18 C
ATOM 16 N7 G A 40 119.416 66.921 -3.736 1.00 81.71 N
ATOM 17 C5 G A 40 120.138 66.833 -4.918 1.00 82.05 C
ATOM 18 C6 G A 40 121.537 66.944 -5.153 1.00 82.34 C
ATOM 19 O6 G A 40 122.444 67.163 -4.337 1.00 81.52 O
ATOM 20 N1 G A 40 121.841 66.780 -6.500 1.00 82.53 N
ATOM 21 C2 G A 40 120.922 66.548 -7.493 1.00 82.93 C
ATOM 22 N2 G A 40 121.411 66.414 -8.725 1.00 84.07 N
ATOM 23 N3 G A 40 119.619 66.453 -7.292 1.00 82.62 N
ATOM 24 C4 G A 40 119.298 66.603 -5.990 1.00 82.52 C
ATOM 25 P C A 41 115.923 61.670 -5.506 1.00 86.90 P
ATOM 26 OP1 C A 41 114.943 60.601 -5.855 1.00 86.05 O
ATOM 27 OP2 C A 41 116.443 61.766 -4.109 1.00 86.27 O
ATOM 28 O5' C A 41 117.179 61.568 -6.486 1.00 84.65 O
TER
ATOM 1 O3' A B 19 128.315 64.783 5.649 1.00 49.76 O
ATOM 2 P G B 20 127.863 65.880 4.559 1.00 52.14 P
ATOM 3 OP1 G B 20 128.223 65.374 3.202 1.00 51.80 O
ATOM 4 OP2 G B 20 128.373 67.200 5.011 1.00 53.75 O
ATOM 5 O5' G B 20 126.269 65.922 4.652 1.00 52.19 O
ATOM 6 C5' G B 20 125.599 66.369 5.831 1.00 51.21 C
ATOM 7 C4' G B 20 124.199 66.821 5.491 1.00 50.20 C
ATOM 8 O4' G B 20 124.288 67.950 4.592 1.00 51.03 O
ATOM 9 C3' G B 20 123.351 65.797 4.759 1.00 50.92 C
ATOM 10 O3' G B 20 122.645 65.030 5.716 1.00 52.26 O
ATOM 11 C2' G B 20 122.395 66.669 3.956 1.00 50.66 C
ATOM 12 O2' G B 20 121.316 67.130 4.737 1.00 51.04 O
ATOM 13 C1' G B 20 123.288 67.857 3.591 1.00 50.30 C
ATOM 14 N9 G B 20 123.968 67.767 2.301 1.00 49.66 N
ATOM 15 C8 G B 20 125.327 67.826 2.095 1.00 49.46 C
ATOM 16 N7 G B 20 125.662 67.712 0.840 1.00 49.56 N
ATOM 17 C5 G B 20 124.453 67.571 0.176 1.00 49.17 C
ATOM 18 C6 G B 20 124.188 67.403 -1.197 1.00 48.67 C
ATOM 19 O6 G B 20 124.996 67.355 -2.127 1.00 49.90 O
ATOM 20 N1 G B 20 122.824 67.290 -1.448 1.00 48.20 N
ATOM 21 C2 G B 20 121.842 67.351 -0.486 1.00 49.28 C
ATOM 22 N2 G B 20 120.576 67.239 -0.912 1.00 49.15 N
ATOM 23 N3 G B 20 122.082 67.514 0.805 1.00 49.33 N
ATOM 24 C4 G B 20 123.398 67.610 1.064 1.00 48.88 C
ATOM 25 P C B 21 122.950 63.467 5.871 1.00 53.45 P
ATOM 26 OP1 C B 21 122.728 63.090 7.298 1.00 54.28 O
ATOM 27 OP2 C B 21 124.256 63.181 5.239 1.00 55.24 O
ATOM 28 O5' C B 21 121.840 62.793 4.959 1.00 53.38 O
TER
Atoms:
OP1: (112.988,66.098,-0.846)
OP2: (115.531,66.429,-0.995)
C3': (115.967,64.280,-5.546)
C1': (116.771,66.384,-6.185)
C5': (114.751,65.204,-3.542)
O6: (122.444,67.163,-4.337)
O4': (115.704,66.597,-5.276)
C8: (118.174,66.753,-4.101)
C2: (120.922,66.548,-7.493)
C6: (121.537,66.944,-5.153)
C5: (120.138,66.833,-4.918)
C4: (119.298,66.603,-5.990)
P: (114.162,66.731,-1.502)
C4': (115.023,65.340,-5.017)
C2': (116.585,64.973,-6.743)
O2': (115.694,65.004,-7.839)
N1: (121.841,66.780,-6.500)
N2: (121.411,66.414,-8.725)
N3: (119.619,66.453,-7.292)
N7: (119.416,66.921,-3.736)
N9: (118.027,66.566,-5.456)
O5': (114.113,66.369,-3.052)
O3': (115.271,63.092,-5.882)
OP2: (115.531,66.429,-0.995)
C3': (115.967,64.280,-5.546)
C1': (116.771,66.384,-6.185)
C5': (114.751,65.204,-3.542)
O6: (122.444,67.163,-4.337)
O4': (115.704,66.597,-5.276)
C8: (118.174,66.753,-4.101)
C2: (120.922,66.548,-7.493)
C6: (121.537,66.944,-5.153)
C5: (120.138,66.833,-4.918)
C4: (119.298,66.603,-5.990)
P: (114.162,66.731,-1.502)
C4': (115.023,65.340,-5.017)
C2': (116.585,64.973,-6.743)
O2': (115.694,65.004,-7.839)
N1: (121.841,66.780,-6.500)
N2: (121.411,66.414,-8.725)
N3: (119.619,66.453,-7.292)
N7: (119.416,66.921,-3.736)
N9: (118.027,66.566,-5.456)
O5': (114.113,66.369,-3.052)
O3': (115.271,63.092,-5.882)
OP1: (128.223,65.374,3.202)
OP2: (128.373,67.200,5.011)
C3': (123.351,65.797,4.759)
C1': (123.288,67.857,3.591)
C5': (125.599,66.369,5.831)
O6: (124.996,67.355,-2.127)
O4': (124.288,67.950,4.592)
C8: (125.327,67.826,2.095)
C2: (121.842,67.351,-0.486)
C6: (124.188,67.403,-1.197)
C5: (124.453,67.571,0.176)
C4: (123.398,67.610,1.064)
P: (127.863,65.880,4.559)
C4': (124.199,66.821,5.491)
C2': (122.395,66.669,3.956)
O2': (121.316,67.130,4.737)
N1: (122.824,67.290,-1.448)
N2: (120.576,67.239,-0.912)
N3: (122.082,67.514,0.805)
N7: (125.662,67.712,0.840)
N9: (123.968,67.767,2.301)
O5': (126.269,65.922,4.652)
O3': (122.645,65.030,5.716)
OP2: (128.373,67.200,5.011)
C3': (123.351,65.797,4.759)
C1': (123.288,67.857,3.591)
C5': (125.599,66.369,5.831)
O6: (124.996,67.355,-2.127)
O4': (124.288,67.950,4.592)
C8: (125.327,67.826,2.095)
C2: (121.842,67.351,-0.486)
C6: (124.188,67.403,-1.197)
C5: (124.453,67.571,0.176)
C4: (123.398,67.610,1.064)
P: (127.863,65.880,4.559)
C4': (124.199,66.821,5.491)
C2': (122.395,66.669,3.956)
O2': (121.316,67.130,4.737)
N1: (122.824,67.290,-1.448)
N2: (120.576,67.239,-0.912)
N3: (122.082,67.514,0.805)
N7: (125.662,67.712,0.840)
N9: (123.968,67.767,2.301)
O5': (126.269,65.922,4.652)
O3': (122.645,65.030,5.716)
Image (generated by PyMOL):